******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/HSF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:2679633-2679653 1.0000 20 chr19:7124992-7125012 1.0000 20 chr12:125399994-12540001 1.0000 20 chr7:138791891-138791911 1.0000 20 chr12:1704561-1704581 1.0000 20 chr19:1354621-1354641 1.0000 20 chr9:129483956-129483976 1.0000 20 chr16:89227898-89227918 1.0000 20 chr10:121410932-12141095 1.0000 20 chr13:31363789-31363809 1.0000 20 chr18:74827651-74827671 1.0000 20 chr19:18740806-18740826 1.0000 20 chr5:50254917-50254937 1.0000 20 chr4:103972271-103972291 1.0000 20 chr7:75924075-75924095 1.0000 20 chr7:142153408-142153428 1.0000 20 chr8:10386143-10386163 1.0000 20 chr12:50900784-50900804 1.0000 20 chr1:183447301-183447321 1.0000 20 chr1:224306579-224306599 1.0000 20 chr19:54693584-54693604 1.0000 20 chr16:89050711-89050731 1.0000 20 chr10:74836802-74836822 1.0000 20 chr16:89040002-89040022 1.0000 20 chr1:230031425-230031445 1.0000 20 chr11:6649263-6649283 1.0000 20 chr15:74691657-74691677 1.0000 20 chr1:230305705-230305725 1.0000 20 chr5:135547980-135548000 1.0000 20 chr15:38916877-38916897 1.0000 20 chr8:1724588-1724608 1.0000 20 chr17:7258435-7258455 1.0000 20 chr19:54692251-54692271 1.0000 20 chr1:161494225-161494245 1.0000 20 chr7:73089258-73089278 1.0000 20 chr19:2398938-2398958 1.0000 20 chr16:11633658-11633678 1.0000 20 chrX:102942998-102943018 1.0000 20 chr8:27326170-27326190 1.0000 20 chrX:100670619-100670639 1.0000 20 chr19:18100440-18100460 1.0000 20 chr12:108055794-10805581 1.0000 20 chr1:3400532-3400552 1.0000 20 chr6:108581649-108581669 1.0000 20 chr2:242905556-242905576 1.0000 20 chrX:19895738-19895758 1.0000 20 chr3:130613231-130613251 1.0000 20 chr10:11252532-11252552 1.0000 20 chr12:48500565-48500585 1.0000 20 chr19:5864208-5864228 1.0000 20 chr10:74014463-74014483 1.0000 20 chr7:104994460-104994480 1.0000 20 chr3:149292372-149292392 1.0000 20 chr17:26880664-26880684 1.0000 20 chr10:73457884-73457904 1.0000 20 chr17:44267647-44267667 1.0000 20 chr1:183014245-183014265 1.0000 20 chr5:54600010-54600030 1.0000 20 chr19:5865305-5865325 1.0000 20 chr13:31735078-31735098 1.0000 20 chr5:55401654-55401674 1.0000 20 chr20:45982648-45982668 1.0000 20 chr1:235017241-235017261 1.0000 20 chr14:77379820-77379840 1.0000 20 chr12:122062814-12206283 1.0000 20 chr11:133906966-13390698 1.0000 20 chr19:49334411-49334431 1.0000 20 chr8:26437594-26437614 1.0000 20 chr12:49975041-49975061 1.0000 20 chr9:21031740-21031760 1.0000 20 chr7:27774380-27774400 1.0000 20 chr2:179995473-179995493 1.0000 20 chr4:159644091-159644111 1.0000 20 chr19:4763212-4763232 1.0000 20 chr10:52146882-52146902 1.0000 20 chr19:10512405-10512425 1.0000 20 chr8:103597030-103597050 1.0000 20 chr6:30652673-30652693 1.0000 20 chr19:11230963-11230983 1.0000 20 chr11:65261536-65261556 1.0000 20 chr20:32602873-32602893 1.0000 20 chr15:52135811-52135831 1.0000 20 chr15:60973716-60973736 1.0000 20 chrX:27354761-27354781 1.0000 20 chr5:122756354-122756374 1.0000 20 chr17:13413007-13413027 1.0000 20 chr1:68270620-68270640 1.0000 20 chr9:136292967-136292987 1.0000 20 chr19:48282477-48282497 1.0000 20 chr3:30709094-30709114 1.0000 20 chr1:45987129-45987149 1.0000 20 chr6:44215547-44215567 1.0000 20 chr13:28580732-28580752 1.0000 20 chr8:11311531-11311551 1.0000 20 chr1:22493069-22493089 1.0000 20 chr19:5968154-5968174 1.0000 20 chr8:143408087-143408107 1.0000 20 chr11:70027914-70027934 1.0000 20 chr1:181056858-181056878 1.0000 20 chr4:17582117-17582137 1.0000 20 chr9:130039595-130039615 1.0000 20 chr6:31783126-31783146 1.0000 20 chr7:150020739-150020759 1.0000 20 chr19:2049606-2049626 1.0000 20 chr11:32850795-32850815 1.0000 20 chr22:27020156-27020176 1.0000 20 chr17:48929641-48929661 1.0000 20 chr6:15275111-15275131 1.0000 20 chr8:26161528-26161548 1.0000 20 chr9:2839613-2839633 1.0000 20 chr21:35445523-35445543 1.0000 20 chr6:31789963-31789983 1.0000 20 chr6:138224982-138225002 1.0000 20 chr1:221910869-221910889 1.0000 20 chr16:50279625-50279645 1.0000 20 chr2:231522019-231522039 1.0000 20 chr5:172199665-172199685 1.0000 20 chr4:128703310-128703330 1.0000 20 chr17:40168467-40168487 1.0000 20 chr12:103864665-10386468 1.0000 20 chr17:64563420-64563440 1.0000 20 chr12:65278669-65278689 1.0000 20 chr8:61682512-61682532 1.0000 20 chr10:88691625-88691645 1.0000 20 chr17:55979163-55979183 1.0000 20 chr4:114821073-114821093 1.0000 20 chr10:34727937-34727957 1.0000 20 chr19:2678309-2678329 1.0000 20 chr4:165816114-165816134 1.0000 20 chr12:104356439-10435645 1.0000 20 chr22:17745382-17745402 1.0000 20 chr18:54745547-54745567 1.0000 20 chr5:158383706-158383726 1.0000 20 chrX:108779708-108779728 1.0000 20 chr12:112125292-11212531 1.0000 20 chr7:148424770-148424790 1.0000 20 chr14:93522995-93523015 1.0000 20 chr17:26924837-26924857 1.0000 20 chr17:73110910-73110930 1.0000 20 chr2:109191933-109191953 1.0000 20 chr7:150792913-150792933 1.0000 20 chr9:19441873-19441893 1.0000 20 chr14:64204339-64204359 1.0000 20 chrX:47400619-47400639 1.0000 20 chr17:73850739-73850759 1.0000 20 chr16:48647462-48647482 1.0000 20 chr17:7790834-7790854 1.0000 20 chr4:121898950-121898970 1.0000 20 chr22:38072773-38072793 1.0000 20 chr15:57589584-57589604 1.0000 20 chr4:114316078-114316098 1.0000 20 chr18:19284881-19284901 1.0000 20 chr2:24731323-24731343 1.0000 20 chr16:89930354-89930374 1.0000 20 chr14:75959797-75959817 1.0000 20 chr1:85744756-85744776 1.0000 20 chr6:149819296-149819316 1.0000 20 chr12:6387233-6387253 1.0000 20 chr4:147188541-147188561 1.0000 20 chr10:7449979-7449999 1.0000 20 chr2:150440455-150440475 1.0000 20 chr12:2904003-2904023 1.0000 20 chr7:69507654-69507674 1.0000 20 chr1:193180896-193180916 1.0000 20 chr4:186180312-186180332 1.0000 20 chr16:17300787-17300807 1.0000 20 chr19:16493625-16493645 1.0000 20 chr1:20024916-20024936 1.0000 20 chr11:75273204-75273224 1.0000 20 chr6:152086828-152086848 1.0000 20 chr15:81590374-81590394 1.0000 20 chrX:102118929-102118949 1.0000 20 chr21:44395056-44395076 1.0000 20 chr12:54833541-54833561 1.0000 20 chr2:238512417-238512437 1.0000 20 chrX:53110213-53110233 1.0000 20 chr6:31782561-31782581 1.0000 20 chr4:132380907-132380927 1.0000 20 chr12:122228203-12222822 1.0000 20 chr5:115963189-115963209 1.0000 20 chr16:67838038-67838058 1.0000 20 chr17:54911170-54911190 1.0000 20 chr8:103871701-103871721 1.0000 20 chr2:232258971-232258991 1.0000 20 chr7:24860757-24860777 1.0000 20 chr18:10851877-10851897 1.0000 20 chr15:42787269-42787289 1.0000 20 chr6:45613158-45613178 1.0000 20 chr1:16162277-16162297 1.0000 20 chr17:64982109-64982129 1.0000 20 chr7:75932928-75932948 1.0000 20 chr3:141118959-141118979 1.0000 20 chr4:56301477-56301497 1.0000 20 chr9:139781228-139781248 1.0000 20 chr19:920948-920968 1.0000 20 chr4:43765270-43765290 1.0000 20 chr6:32980808-32980828 1.0000 20 chr20:10533208-10533228 1.0000 20 chr6:167507027-167507047 1.0000 20 chr3:8810715-8810735 1.0000 20 chr19:3133760-3133780 1.0000 20 chr19:3756918-3756938 1.0000 20 chr18:42210242-42210262 1.0000 20 chr16:3301328-3301348 1.0000 20 chr8:29940869-29940889 1.0000 20 chr19:1548922-1548942 1.0000 20 chr16:87981922-87981942 1.0000 20 chr12:77154402-77154422 1.0000 20 chr1:145454745-145454765 1.0000 20 chr9:109863834-109863854 1.0000 20 chr5:96042476-96042496 1.0000 20 chr21:45564801-45564821 1.0000 20 chr10:22910416-22910436 1.0000 20 chr13:41885982-41886002 1.0000 20 chr1:43413013-43413033 1.0000 20 chr22:24109022-24109042 1.0000 20 chr17:73996632-73996652 1.0000 20 chr12:124522063-12452208 1.0000 20 chr3:72004763-72004783 1.0000 20 chr12:49629043-49629063 1.0000 20 chr8:19495334-19495354 1.0000 20 chr16:22368769-22368789 1.0000 20 chr6:167529125-167529145 1.0000 20 chr19:14629247-14629267 1.0000 20 chr1:66740558-66740578 1.0000 20 chr14:24058492-24058512 1.0000 20 chr2:212946059-212946079 1.0000 20 chr11:62334991-62335011 1.0000 20 chr2:82567181-82567201 1.0000 20 chr11:129143717-12914373 1.0000 20 chr8:135732885-135732905 1.0000 20 chr18:48406336-48406356 1.0000 20 chr9:139636438-139636458 1.0000 20 chr5:158528578-158528598 1.0000 20 chr5:131563511-131563531 1.0000 20 chr12:94657184-94657204 1.0000 20 chr4:39471168-39471188 1.0000 20 chr3:196001731-196001751 1.0000 20 chr16:27192502-27192522 1.0000 20 chr2:85766762-85766782 1.0000 20 chr1:25260879-25260899 1.0000 20 chr19:17516435-17516455 1.0000 20 chr2:44271509-44271529 1.0000 20 chr2:12570857-12570877 1.0000 20 chr6:157948592-157948612 1.0000 20 chr11:117689111-11768913 1.0000 20 chr20:43094023-43094043 1.0000 20 chr1:111505911-111505931 1.0000 20 chr16:87905280-87905300 1.0000 20 chr8:129142446-129142466 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_HSF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/HSF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.23 G 0.232 T 0.267 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.23 G 0.232 T 0.267 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTCYAGAA MEME-1 width = 8 sites = 108 llr = 778 E-value = 2.1e-122 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCYAGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::7:98 pos.-specific C 1:a3::11 probability G 11:13a:: matrix T 89:6:::1 bits 2.1 * * 1.9 * * 1.7 * * 1.5 * ** Relative 1.3 ** ** Entropy 1.1 *** *** (10.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTAGAA consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYAGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:43094023-43094043 4 2.00e-05 AAG TTCTAGAA CATTCTGGA chr11:117689111-11768913 13 2.00e-05 GTATGGAACA TTCTAGAA chr11:129143717-12914373 5 2.00e-05 AATT TTCTAGAA GATTCTCT chr1:66740558-66740578 1 2.00e-05 . TTCTAGAA GGTTCTGGTC chr19:1548922-1548942 11 2.00e-05 GGCTAGAACA TTCTAGAA GA chr19:3133760-3133780 4 2.00e-05 ACT TTCTAGAA TTTTCTACA chr4:43765270-43765290 7 2.00e-05 ggaatt ttctagaa ctactt chrX:102118929-102118949 12 2.00e-05 CTACAGAGTT TTCTAGAA G chr12:104356439-10435645 8 2.00e-05 tcccttt ttctagaa atttc chr10:88691625-88691645 2 2.00e-05 t ttctagaa caaatctcag chr17:40168467-40168487 5 2.00e-05 AAAC TTCTAGAA CCTTCTTG chr22:27020156-27020176 13 2.00e-05 GGATAGAAGT TTCTAGAA chr9:136292967-136292987 12 2.00e-05 atgcagaaat ttctagaa a chr5:54600010-54600030 10 2.00e-05 Tcttgctat ttctagaa cac chr19:2398938-2398958 4 2.00e-05 aga ttctagaa gattccaga chr11:6649263-6649283 9 2.00e-05 cctgtgtg ttctagaa tatt chr19:2679633-2679653 7 2.00e-05 GGGAGT TTCTAGAA GGTTCC chr1:111505911-111505931 9 3.72e-05 TGAGAATC TTCCAGAA GGTT chr6:157948592-157948612 5 3.72e-05 AGCC TTCCAGAA CTGCCCAG chr4:39471168-39471188 7 3.72e-05 TGAAAA TTCCAGAA TCATGC chr14:24058492-24058512 12 3.72e-05 CAGATCATGA TTCCAGAA T chr17:64982109-64982129 7 3.72e-05 GCAAAG TTCCAGAA ACATCA chr1:16162277-16162297 10 3.72e-05 GCTCCATCT TTCCAGAA ACT chr15:42787269-42787289 9 3.72e-05 CTAGAAAT TTCCAGAA GGCG chr14:93522995-93523015 12 3.72e-05 CACCAGCCCA TTCCAGAA C chrX:108779708-108779728 6 3.72e-05 GAACG TTCCAGAA TGCTAAA chr22:17745382-17745402 10 3.72e-05 CCCGGAACC TTCCAGAA TGG chr19:2678309-2678329 12 3.72e-05 TTCTGGAATC TTCCAGAA G chr16:50279625-50279645 8 3.72e-05 TGGATCC TTCCAGAA ACACG chr15:52135811-52135831 2 3.72e-05 G TTCCAGAA GTTTCTCTAG chr20:45982648-45982668 6 3.72e-05 GAAAT TTCCAGAA GGCCCGT chr17:44267647-44267667 7 3.72e-05 TCTAAC TTCCAGAA TTTTCC chr10:73457884-73457904 5 3.72e-05 aatt ttccagaa ttttctgg chr19:5864208-5864228 4 3.72e-05 atg ttccagaa tgttctgga chrX:100670619-100670639 3 3.72e-05 TT TTCCAGAA GTTTCTCTAA chr7:142153408-142153428 6 3.72e-05 GAATA TTCCAGAA GTGCCAT chr19:7124992-7125012 11 3.72e-05 TGGTGGAAGA TTCCAGAA AA chr2:82567181-82567201 6 5.44e-05 gtgaa ttctggaa atttctc chr21:44395056-44395076 12 5.44e-05 ACGCGGAAAT TTCTGGAA G chr1:193180896-193180916 1 5.44e-05 . ttctggaa ttttctattt chr4:147188541-147188561 5 5.44e-05 CCCA TTCTGGAA CCTTCCAA chr2:231522019-231522039 7 5.44e-05 TCAGTG TTCTGGAA CGTTCT chr19:11230963-11230983 8 5.44e-05 TGGAATG TTCTGGAA ATTTC chr19:10512405-10512425 8 5.44e-05 CAGAGTA TTCTGGAA GGATG chr19:18100440-18100460 5 5.44e-05 AGGT TTCTGGAA GATTCTAG chr16:11633658-11633678 13 5.44e-05 TTCCAGCATG TTCTGGAA chr7:73089258-73089278 10 5.44e-05 TCAGGAAGG TTCTGGAA TGT chr5:135547980-135548000 3 5.44e-05 GC TTCTGGAA GATGAATGGC chr16:89227898-89227918 13 6.92e-05 GGAAGGCATG TTCCGGAA chr7:138791891-138791911 3 8.66e-05 CA TGCTAGAA TGTTCCTTCC chr6:45613158-45613178 9 1.04e-04 TCAGAATG TTCTAGCA TGTT chr16:89930354-89930374 13 1.04e-04 TCCAGGAATG TTCTAGCA chr6:167529125-167529145 5 1.21e-04 AAAC GTCTAGAA GGTGTTAT chr2:24731323-24731343 2 1.21e-04 A GTCTAGAA TATTCCTGAA chr3:149292372-149292392 9 1.21e-04 TTTAATCA GTCTAGAA ACTT chr16:67838038-67838058 9 1.38e-04 TCTGAATG TTCGAGAA CACA chrX:27354761-27354781 9 1.38e-04 GAAGAAAA TTCGAGAA GAGC chr11:62334991-62335011 1 1.56e-04 . CTCTAGAA CCTGCCAGGA chr1:145454745-145454765 4 1.56e-04 TGA CTCTAGAA TGTTCTGTT chr1:235017241-235017261 7 1.56e-04 tgtagg ctctagaa aattcc chr2:44271509-44271529 7 1.90e-04 CTCACC TTCTAGAT GGAAGC chr5:158383706-158383726 3 1.90e-04 GG TTCTAGAT GTTAAGCATG chr12:122062814-12206283 1 1.90e-04 . ttctagat gctgagggta chr21:45564801-45564821 8 2.37e-04 AGGAAGG TGCTGGAA CTCAC chr6:32980808-32980828 12 2.37e-04 cagtctttca tgctggaa t chr4:56301477-56301497 11 2.37e-04 CTCATGAAAC TGCTGGAA CT chr8:27326170-27326190 5 2.37e-04 aacc ttccagca ccttccag chrX:19895738-19895758 9 2.67e-04 CTAGAACA GTCCAGAA AAAT chr8:10386143-10386163 9 2.67e-04 CCGGTAGA TTCTGGCA CTTT chr9:129483956-129483976 2 2.67e-04 C TTCTGGCA GGTTCCAGTC chr16:3301328-3301348 7 2.99e-04 agaaac ttctagag ctttcc chr5:55401654-55401674 8 2.99e-04 TAGAAAA TTCTAGAG AAGGA chr12:94657184-94657204 6 3.28e-04 CTACT CTCCAGAA AGTTCTG chr17:73110910-73110930 7 3.77e-04 TGAAAT TTCTCGAA ATTTCT chr9:2839613-2839633 8 3.77e-04 aggagta ctctggaa agtgc chr13:31735078-31735098 9 3.77e-04 GACACAAG CTCTGGAA GCTT chr6:108581649-108581669 3 3.77e-04 TG TTCTCGAA AGATCTACCC chr18:74827651-74827671 3 3.77e-04 CC TTCCAGAT TGCAATAAAG chr19:1354621-1354641 4 3.77e-04 AGA TTCTCGAA AGTTCTGGA chr1:25260879-25260899 3 4.22e-04 AG TTCCAGAC TTGGAGGGGA chr16:17300787-17300807 6 4.22e-04 gaaat ttctggat atttctg chr14:77379820-77379840 2 4.22e-04 C TTCCAGAC CTTTCCGGTA chr19:14629247-14629267 7 4.94e-04 GGAAGC TTCCAGAG CCCGCC chr15:74691657-74691677 5 4.94e-04 aatg ttccagag ttagctag chr19:2049606-2049626 8 5.29e-04 TGGAACC ATCTAGAA AGTTC chr3:141118959-141118979 8 6.13e-04 GGGCCCT TCCTGGAA ATTTC chr19:18740806-18740826 6 6.13e-04 gaatg tcctggaa cattcta chr4:17582117-17582137 12 6.58e-04 TGAAAGACTG ATCCAGAA T chr4:121898950-121898970 11 6.91e-04 AGAAGCTTAC ATCTGGAA GG chr1:183447301-183447321 3 8.10e-04 AA TGCTAGAT CAGATAGTCA chr2:109191933-109191953 8 8.74e-04 CAGATGT TTCTAGCT CTTTC chr7:27774380-27774400 4 8.74e-04 ACT TGCTAGAC ATCCACTAT chr9:139636438-139636458 8 9.62e-04 TGGCAGT GGCCAGAA TGTAC chr4:186180312-186180332 5 9.62e-04 CTAT TGCTGGCA CTTGCTTG chr17:48929641-48929661 3 9.62e-04 GC TTCTAGCC TGAGGAAGTT chr19:5865305-5865325 11 9.62e-04 TTTCCCCCAA GGCCAGAA TG chr7:104994460-104994480 4 9.62e-04 TCA GGCCAGAA CCTTCCAGG chr10:121410932-12141095 8 9.62e-04 CAGAAGT TTCTAGCC GGCCA chr1:161494225-161494245 11 1.16e-03 Ggcgggaagg tgcgggaa gg chr19:54693584-54693604 6 1.26e-03 GTTCC TTCGGGCA CAATCGG chr15:57589584-57589604 8 1.49e-03 TAGAATG TTCCAGCC AGGAC chr17:73850739-73850759 9 1.49e-03 CTGGAACA TACTGGAA GCCT chr19:5968154-5968174 10 1.61e-03 GGCTGAAGA CTCGGGAA AGT chr1:45987129-45987149 4 1.61e-03 CGA GTCTGGAT ACAGGTCCA chr5:96042476-96042496 1 1.77e-03 . TTGTGGAA CTGAGAGTTC chr1:68270620-68270640 11 1.93e-03 gaaaaaagca ttctgaaa ta chr7:69507654-69507674 13 2.13e-03 TGGAACTTTC TTCGGGAG chr3:72004763-72004783 5 2.45e-03 AGCA GCCTGGAA TTTGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYAGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:43094023-43094043 2e-05 3_[+1]_9 chr11:117689111-11768913 2e-05 12_[+1] chr11:129143717-12914373 2e-05 4_[+1]_8 chr1:66740558-66740578 2e-05 [+1]_12 chr19:1548922-1548942 2e-05 10_[+1]_2 chr19:3133760-3133780 2e-05 3_[+1]_9 chr4:43765270-43765290 2e-05 6_[+1]_6 chrX:102118929-102118949 2e-05 11_[+1]_1 chr12:104356439-10435645 2e-05 7_[+1]_5 chr10:88691625-88691645 2e-05 1_[+1]_11 chr17:40168467-40168487 2e-05 4_[+1]_8 chr22:27020156-27020176 2e-05 12_[+1] chr9:136292967-136292987 2e-05 11_[+1]_1 chr5:54600010-54600030 2e-05 9_[+1]_3 chr19:2398938-2398958 2e-05 3_[+1]_9 chr11:6649263-6649283 2e-05 8_[+1]_4 chr19:2679633-2679653 2e-05 6_[+1]_6 chr1:111505911-111505931 3.7e-05 8_[+1]_4 chr6:157948592-157948612 3.7e-05 4_[+1]_8 chr4:39471168-39471188 3.7e-05 6_[+1]_6 chr14:24058492-24058512 3.7e-05 11_[+1]_1 chr17:64982109-64982129 3.7e-05 6_[+1]_6 chr1:16162277-16162297 3.7e-05 9_[+1]_3 chr15:42787269-42787289 3.7e-05 8_[+1]_4 chr14:93522995-93523015 3.7e-05 11_[+1]_1 chrX:108779708-108779728 3.7e-05 5_[+1]_7 chr22:17745382-17745402 3.7e-05 9_[+1]_3 chr19:2678309-2678329 3.7e-05 11_[+1]_1 chr16:50279625-50279645 3.7e-05 7_[+1]_5 chr15:52135811-52135831 3.7e-05 1_[+1]_11 chr20:45982648-45982668 3.7e-05 5_[+1]_7 chr17:44267647-44267667 3.7e-05 6_[+1]_6 chr10:73457884-73457904 3.7e-05 4_[+1]_8 chr19:5864208-5864228 3.7e-05 3_[+1]_9 chrX:100670619-100670639 3.7e-05 2_[+1]_10 chr7:142153408-142153428 3.7e-05 5_[+1]_7 chr19:7124992-7125012 3.7e-05 10_[+1]_2 chr2:82567181-82567201 5.4e-05 5_[+1]_7 chr21:44395056-44395076 5.4e-05 11_[+1]_1 chr1:193180896-193180916 5.4e-05 [+1]_12 chr4:147188541-147188561 5.4e-05 4_[+1]_8 chr2:231522019-231522039 5.4e-05 6_[+1]_6 chr19:11230963-11230983 5.4e-05 7_[+1]_5 chr19:10512405-10512425 5.4e-05 7_[+1]_5 chr19:18100440-18100460 5.4e-05 4_[+1]_8 chr16:11633658-11633678 5.4e-05 12_[+1] chr7:73089258-73089278 5.4e-05 9_[+1]_3 chr5:135547980-135548000 5.4e-05 2_[+1]_10 chr16:89227898-89227918 6.9e-05 12_[+1] chr7:138791891-138791911 8.7e-05 2_[+1]_10 chr6:45613158-45613178 0.0001 8_[+1]_4 chr16:89930354-89930374 0.0001 12_[+1] chr6:167529125-167529145 0.00012 4_[+1]_8 chr2:24731323-24731343 0.00012 1_[+1]_11 chr3:149292372-149292392 0.00012 8_[+1]_4 chr16:67838038-67838058 0.00014 8_[+1]_4 chrX:27354761-27354781 0.00014 8_[+1]_4 chr11:62334991-62335011 0.00016 [+1]_12 chr1:145454745-145454765 0.00016 3_[+1]_9 chr1:235017241-235017261 0.00016 6_[+1]_6 chr2:44271509-44271529 0.00019 6_[+1]_6 chr5:158383706-158383726 0.00019 2_[+1]_10 chr12:122062814-12206283 0.00019 [+1]_12 chr21:45564801-45564821 0.00024 7_[+1]_5 chr6:32980808-32980828 0.00024 11_[+1]_1 chr4:56301477-56301497 0.00024 10_[+1]_2 chr8:27326170-27326190 0.00024 4_[+1]_8 chrX:19895738-19895758 0.00027 8_[+1]_4 chr8:10386143-10386163 0.00027 8_[+1]_4 chr9:129483956-129483976 0.00027 1_[+1]_11 chr16:3301328-3301348 0.0003 6_[+1]_6 chr5:55401654-55401674 0.0003 7_[+1]_5 chr12:94657184-94657204 0.00033 5_[+1]_7 chr17:73110910-73110930 0.00038 6_[+1]_6 chr9:2839613-2839633 0.00038 7_[+1]_5 chr13:31735078-31735098 0.00038 8_[+1]_4 chr6:108581649-108581669 0.00038 2_[+1]_10 chr18:74827651-74827671 0.00038 2_[+1]_10 chr19:1354621-1354641 0.00038 3_[+1]_9 chr1:25260879-25260899 0.00042 2_[+1]_10 chr16:17300787-17300807 0.00042 5_[+1]_7 chr14:77379820-77379840 0.00042 1_[+1]_11 chr19:14629247-14629267 0.00049 6_[+1]_6 chr15:74691657-74691677 0.00049 4_[+1]_8 chr19:2049606-2049626 0.00053 7_[+1]_5 chr3:141118959-141118979 0.00061 7_[+1]_5 chr19:18740806-18740826 0.00061 5_[+1]_7 chr4:17582117-17582137 0.00066 11_[+1]_1 chr4:121898950-121898970 0.00069 10_[+1]_2 chr1:183447301-183447321 0.00081 2_[+1]_10 chr2:109191933-109191953 0.00087 7_[+1]_5 chr7:27774380-27774400 0.00087 3_[+1]_9 chr9:139636438-139636458 0.00096 7_[+1]_5 chr4:186180312-186180332 0.00096 4_[+1]_8 chr17:48929641-48929661 0.00096 2_[+1]_10 chr19:5865305-5865325 0.00096 10_[+1]_2 chr7:104994460-104994480 0.00096 3_[+1]_9 chr10:121410932-12141095 0.00096 7_[+1]_5 chr1:161494225-161494245 0.0012 10_[+1]_2 chr19:54693584-54693604 0.0013 5_[+1]_7 chr15:57589584-57589604 0.0015 7_[+1]_5 chr17:73850739-73850759 0.0015 8_[+1]_4 chr19:5968154-5968174 0.0016 9_[+1]_3 chr1:45987129-45987149 0.0016 3_[+1]_9 chr5:96042476-96042496 0.0018 [+1]_12 chr1:68270620-68270640 0.0019 10_[+1]_2 chr7:69507654-69507674 0.0021 12_[+1] chr3:72004763-72004783 0.0025 4_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYAGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCYAGAA width=8 seqs=108 chr20:43094023-43094043 ( 4) TTCTAGAA 1 chr11:117689111-11768913 ( 13) TTCTAGAA 1 chr11:129143717-12914373 ( 5) TTCTAGAA 1 chr1:66740558-66740578 ( 1) TTCTAGAA 1 chr19:1548922-1548942 ( 11) TTCTAGAA 1 chr19:3133760-3133780 ( 4) TTCTAGAA 1 chr4:43765270-43765290 ( 7) TTCTAGAA 1 chrX:102118929-102118949 ( 12) TTCTAGAA 1 chr12:104356439-10435645 ( 8) TTCTAGAA 1 chr10:88691625-88691645 ( 2) TTCTAGAA 1 chr17:40168467-40168487 ( 5) TTCTAGAA 1 chr22:27020156-27020176 ( 13) TTCTAGAA 1 chr9:136292967-136292987 ( 12) TTCTAGAA 1 chr5:54600010-54600030 ( 10) TTCTAGAA 1 chr19:2398938-2398958 ( 4) TTCTAGAA 1 chr11:6649263-6649283 ( 9) TTCTAGAA 1 chr19:2679633-2679653 ( 7) TTCTAGAA 1 chr1:111505911-111505931 ( 9) TTCCAGAA 1 chr6:157948592-157948612 ( 5) TTCCAGAA 1 chr4:39471168-39471188 ( 7) TTCCAGAA 1 chr14:24058492-24058512 ( 12) TTCCAGAA 1 chr17:64982109-64982129 ( 7) TTCCAGAA 1 chr1:16162277-16162297 ( 10) TTCCAGAA 1 chr15:42787269-42787289 ( 9) TTCCAGAA 1 chr14:93522995-93523015 ( 12) TTCCAGAA 1 chrX:108779708-108779728 ( 6) TTCCAGAA 1 chr22:17745382-17745402 ( 10) TTCCAGAA 1 chr19:2678309-2678329 ( 12) TTCCAGAA 1 chr16:50279625-50279645 ( 8) TTCCAGAA 1 chr15:52135811-52135831 ( 2) TTCCAGAA 1 chr20:45982648-45982668 ( 6) TTCCAGAA 1 chr17:44267647-44267667 ( 7) TTCCAGAA 1 chr10:73457884-73457904 ( 5) TTCCAGAA 1 chr19:5864208-5864228 ( 4) TTCCAGAA 1 chrX:100670619-100670639 ( 3) TTCCAGAA 1 chr7:142153408-142153428 ( 6) TTCCAGAA 1 chr19:7124992-7125012 ( 11) TTCCAGAA 1 chr2:82567181-82567201 ( 6) TTCTGGAA 1 chr21:44395056-44395076 ( 12) TTCTGGAA 1 chr1:193180896-193180916 ( 1) TTCTGGAA 1 chr4:147188541-147188561 ( 5) TTCTGGAA 1 chr2:231522019-231522039 ( 7) TTCTGGAA 1 chr19:11230963-11230983 ( 8) TTCTGGAA 1 chr19:10512405-10512425 ( 8) TTCTGGAA 1 chr19:18100440-18100460 ( 5) TTCTGGAA 1 chr16:11633658-11633678 ( 13) TTCTGGAA 1 chr7:73089258-73089278 ( 10) TTCTGGAA 1 chr5:135547980-135548000 ( 3) TTCTGGAA 1 chr16:89227898-89227918 ( 13) TTCCGGAA 1 chr7:138791891-138791911 ( 3) TGCTAGAA 1 chr6:45613158-45613178 ( 9) TTCTAGCA 1 chr16:89930354-89930374 ( 13) TTCTAGCA 1 chr6:167529125-167529145 ( 5) GTCTAGAA 1 chr2:24731323-24731343 ( 2) GTCTAGAA 1 chr3:149292372-149292392 ( 9) GTCTAGAA 1 chr16:67838038-67838058 ( 9) TTCGAGAA 1 chrX:27354761-27354781 ( 9) TTCGAGAA 1 chr11:62334991-62335011 ( 1) CTCTAGAA 1 chr1:145454745-145454765 ( 4) CTCTAGAA 1 chr1:235017241-235017261 ( 7) CTCTAGAA 1 chr2:44271509-44271529 ( 7) TTCTAGAT 1 chr5:158383706-158383726 ( 3) TTCTAGAT 1 chr12:122062814-12206283 ( 1) TTCTAGAT 1 chr21:45564801-45564821 ( 8) TGCTGGAA 1 chr6:32980808-32980828 ( 12) TGCTGGAA 1 chr4:56301477-56301497 ( 11) TGCTGGAA 1 chr8:27326170-27326190 ( 5) TTCCAGCA 1 chrX:19895738-19895758 ( 9) GTCCAGAA 1 chr8:10386143-10386163 ( 9) TTCTGGCA 1 chr9:129483956-129483976 ( 2) TTCTGGCA 1 chr16:3301328-3301348 ( 7) TTCTAGAG 1 chr5:55401654-55401674 ( 8) TTCTAGAG 1 chr12:94657184-94657204 ( 6) CTCCAGAA 1 chr17:73110910-73110930 ( 7) TTCTCGAA 1 chr9:2839613-2839633 ( 8) CTCTGGAA 1 chr13:31735078-31735098 ( 9) CTCTGGAA 1 chr6:108581649-108581669 ( 3) TTCTCGAA 1 chr18:74827651-74827671 ( 3) TTCCAGAT 1 chr19:1354621-1354641 ( 4) TTCTCGAA 1 chr1:25260879-25260899 ( 3) TTCCAGAC 1 chr16:17300787-17300807 ( 6) TTCTGGAT 1 chr14:77379820-77379840 ( 2) TTCCAGAC 1 chr19:14629247-14629267 ( 7) TTCCAGAG 1 chr15:74691657-74691677 ( 5) TTCCAGAG 1 chr19:2049606-2049626 ( 8) ATCTAGAA 1 chr3:141118959-141118979 ( 8) TCCTGGAA 1 chr19:18740806-18740826 ( 6) TCCTGGAA 1 chr4:17582117-17582137 ( 12) ATCCAGAA 1 chr4:121898950-121898970 ( 11) ATCTGGAA 1 chr1:183447301-183447321 ( 3) TGCTAGAT 1 chr2:109191933-109191953 ( 8) TTCTAGCT 1 chr7:27774380-27774400 ( 4) TGCTAGAC 1 chr9:139636438-139636458 ( 8) GGCCAGAA 1 chr4:186180312-186180332 ( 5) TGCTGGCA 1 chr17:48929641-48929661 ( 3) TTCTAGCC 1 chr19:5865305-5865325 ( 11) GGCCAGAA 1 chr7:104994460-104994480 ( 4) GGCCAGAA 1 chr10:121410932-12141095 ( 8) TTCTAGCC 1 chr1:161494225-161494245 ( 11) TGCGGGAA 1 chr19:54693584-54693604 ( 6) TTCGGGCA 1 chr15:57589584-57589604 ( 8) TTCCAGCC 1 chr17:73850739-73850759 ( 9) TACTGGAA 1 chr19:5968154-5968174 ( 10) CTCGGGAA 1 chr1:45987129-45987149 ( 4) GTCTGGAT 1 chr5:96042476-96042496 ( 1) TTGTGGAA 1 chr1:68270620-68270640 ( 11) TTCTGAAA 1 chr7:69507654-69507674 ( 13) TTCGGGAG 1 chr3:72004763-72004783 ( 5) GCCTGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYAGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.44767 E= 2.1e-122 -328 -183 -148 162 -486 -305 -119 169 -1340 211 -465 -1340 -1340 45 -206 124 130 -305 40 -1340 -486 -1340 209 -1340 173 -118 -1340 -1340 161 -205 -233 -185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYAGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 108 E= 2.1e-122 0.027778 0.064815 0.083333 0.824074 0.009259 0.027778 0.101852 0.861111 0.000000 0.990741 0.009259 0.000000 0.000000 0.314815 0.055556 0.629630 0.666667 0.027778 0.305556 0.000000 0.009259 0.000000 0.990741 0.000000 0.898148 0.101852 0.000000 0.000000 0.824074 0.055556 0.046296 0.074074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYAGAA MEME-1 regular expression -------------------------------------------------------------------------------- TTC[TC][AG]GAA -------------------------------------------------------------------------------- Time 1.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAHNTTC MEME-2 width = 8 sites = 15 llr = 120 E-value = 8.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAHNTTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :aa32::: pos.-specific C :::44:1a probability G a::12::: matrix T :::22a9: bits 2.1 * * 1.9 *** * * 1.7 *** * * 1.5 *** * * Relative 1.3 *** *** Entropy 1.1 *** *** (11.5 bits) 0.8 *** *** 0.6 *** *** 0.4 *** *** 0.2 **** *** 0.0 -------- Multilevel GAACCTTC consensus AA sequence TG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAHNTTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:196001731-196001751 1 3.19e-05 . GAAACTTC CTTTCATCAC chr19:16493625-16493645 9 3.19e-05 TCCCAAAG GAAACTTC TAGA chr13:31363789-31363809 12 3.19e-05 AGAATTCTCA GAAACTTC T chr1:43413013-43413033 3 9.80e-05 TA GAACATTC CATTCTCTTC chr7:75932928-75932948 9 9.80e-05 GAATCGAA GAACTTTC CGGA chr7:69507654-69507674 5 9.80e-05 TCTG GAACTTTC TTCGGGAG chr16:89050711-89050731 1 9.80e-05 . GAACATTC TGTTCTCAGC chr8:29940869-29940889 5 1.13e-04 TCGG GAAGCTTC TGTGCGTA chr1:181056858-181056878 12 1.70e-04 TGACTGACCA GAAAATTC T chr8:103871701-103871721 3 1.88e-04 CA GAATGTTC CTCAGTGAGA chr10:7449979-7449999 4 1.88e-04 GTG GAATGTTC TTTGTAATC chr5:131563511-131563531 1 2.40e-04 . GAACCTCC CGCGGCGTCG chrX:47400619-47400639 10 2.40e-04 CCCTGGATG GAATTTTC CAC chr17:7258435-7258455 2 2.40e-04 A GAACCTCC AGGCAAGGGC chr10:74014463-74014483 4 2.55e-04 CTA GAAGGTTC TAGTGTATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAHNTTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:196001731-196001751 3.2e-05 [+2]_12 chr19:16493625-16493645 3.2e-05 8_[+2]_4 chr13:31363789-31363809 3.2e-05 11_[+2]_1 chr1:43413013-43413033 9.8e-05 2_[+2]_10 chr7:75932928-75932948 9.8e-05 8_[+2]_4 chr7:69507654-69507674 9.8e-05 4_[+2]_8 chr16:89050711-89050731 9.8e-05 [+2]_12 chr8:29940869-29940889 0.00011 4_[+2]_8 chr1:181056858-181056878 0.00017 11_[+2]_1 chr8:103871701-103871721 0.00019 2_[+2]_10 chr10:7449979-7449999 0.00019 3_[+2]_9 chr5:131563511-131563531 0.00024 [+2]_12 chrX:47400619-47400639 0.00024 9_[+2]_3 chr17:7258435-7258455 0.00024 1_[+2]_11 chr10:74014463-74014483 0.00025 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAHNTTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAHNTTC width=8 seqs=15 chr3:196001731-196001751 ( 1) GAAACTTC 1 chr19:16493625-16493645 ( 9) GAAACTTC 1 chr13:31363789-31363809 ( 12) GAAACTTC 1 chr1:43413013-43413033 ( 3) GAACATTC 1 chr7:75932928-75932948 ( 9) GAACTTTC 1 chr7:69507654-69507674 ( 5) GAACTTTC 1 chr16:89050711-89050731 ( 1) GAACATTC 1 chr8:29940869-29940889 ( 5) GAAGCTTC 1 chr1:181056858-181056878 ( 12) GAAAATTC 1 chr8:103871701-103871721 ( 3) GAATGTTC 1 chr10:7449979-7449999 ( 4) GAATGTTC 1 chr5:131563511-131563531 ( 1) GAACCTCC 1 chrX:47400619-47400639 ( 10) GAATTTTC 1 chr17:7258435-7258455 ( 2) GAACCTCC 1 chr10:74014463-74014483 ( 4) GAAGGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAHNTTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.67734 E= 8.1e+000 -1055 -1055 211 -1055 189 -1055 -1055 -1055 189 -1055 -1055 -1055 -2 80 -80 -42 -43 80 -22 -42 -1055 -1055 -1055 190 -1055 -79 -1055 170 -1055 212 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAHNTTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 8.1e+000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.266667 0.400000 0.133333 0.200000 0.200000 0.400000 0.200000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.133333 0.000000 0.866667 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAHNTTC MEME-2 regular expression -------------------------------------------------------------------------------- GAA[CAT][CAGT]TTC -------------------------------------------------------------------------------- Time 2.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTTCCAG MEME-3 width = 8 sites = 10 llr = 90 E-value = 8.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTTCCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:::193 pos.-specific C a8::a9:: probability G :::2:::7 matrix T ::a8::1: bits 2.1 * * 1.9 * * * 1.7 * * ** 1.5 * * *** Relative 1.3 ******* Entropy 1.1 ******** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTCCAG consensus A G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:109863834-109863854 13 1.25e-05 TTTCTGCCTA CCTTCCAG chr7:104994460-104994480 12 1.25e-05 CAGGCCAGAA CCTTCCAG G chr8:27326170-27326190 13 1.25e-05 ccttccagca ccttccag chr4:147188541-147188561 13 2.70e-05 CATTCTGGAA CCTTCCAA chr11:62334991-62335011 9 3.79e-05 CTCTAGAA CCTGCCAG GACA chr2:232258971-232258991 13 5.26e-05 GCACTTACAA CATTCCAG chr12:49629043-49629063 12 6.49e-05 AAAAAATTCC CCTTCCTG T chr20:10533208-10533228 11 7.76e-05 GAGGGGACTG CCTGCCAA AC chr6:31789963-31789983 13 9.22e-05 AGTTTTCTGA CCTTCAAG chr16:89040002-89040022 3 1.09e-04 AA CATTCCAA ACCCAGAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:109863834-109863854 1.2e-05 12_[+3] chr7:104994460-104994480 1.2e-05 11_[+3]_1 chr8:27326170-27326190 1.2e-05 12_[+3] chr4:147188541-147188561 2.7e-05 12_[+3] chr11:62334991-62335011 3.8e-05 8_[+3]_4 chr2:232258971-232258991 5.3e-05 12_[+3] chr12:49629043-49629063 6.5e-05 11_[+3]_1 chr20:10533208-10533228 7.8e-05 10_[+3]_2 chr6:31789963-31789983 9.2e-05 12_[+3] chr16:89040002-89040022 0.00011 2_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTTCCAG width=8 seqs=10 chr9:109863834-109863854 ( 13) CCTTCCAG 1 chr7:104994460-104994480 ( 12) CCTTCCAG 1 chr8:27326170-27326190 ( 13) CCTTCCAG 1 chr4:147188541-147188561 ( 13) CCTTCCAA 1 chr11:62334991-62335011 ( 9) CCTGCCAG 1 chr2:232258971-232258991 ( 13) CATTCCAG 1 chr12:49629043-49629063 ( 12) CCTTCCTG 1 chr20:10533208-10533228 ( 11) CCTGCCAA 1 chr6:31789963-31789983 ( 13) CCTTCAAG 1 chr16:89040002-89040022 ( 3) CATTCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.2854 E= 8.5e+001 -997 212 -997 -997 -43 180 -997 -997 -997 -997 -997 190 -997 -997 -22 158 -997 212 -997 -997 -143 197 -997 -997 173 -997 -997 -142 15 -997 159 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 8.5e+001 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.900000 0.000000 0.000000 0.100000 0.300000 0.000000 0.700000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTCCAG MEME-3 regular expression -------------------------------------------------------------------------------- C[CA]T[TG]CCA[GA] -------------------------------------------------------------------------------- Time 3.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCCCACC MEME-4 width = 8 sites = 2 llr = 23 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCCCACC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :aaaa:aa probability G a::::::: matrix T :::::::: bits 2.1 ***** ** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCCCACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCACC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:24109022-24109042 13 9.27e-06 CAGAGTATGA GCCCCACC chr1:3400532-3400552 6 9.27e-06 AACAT GCCCCACC CTGGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCACC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:24109022-24109042 9.3e-06 12_[+4] chr1:3400532-3400552 9.3e-06 5_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCACC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCCCACC width=8 seqs=2 chr22:24109022-24109042 ( 13) GCCCCACC 1 chr1:3400532-3400552 ( 6) GCCCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCACC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.7e+003 -765 -765 210 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -765 211 -765 -765 188 -765 -765 -765 -765 211 -765 -765 -765 211 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCACC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCACC MEME-4 regular expression -------------------------------------------------------------------------------- GCCCCACC -------------------------------------------------------------------------------- Time 4.31 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRAGGMA MEME-5 width = 8 sites = 15 llr = 118 E-value = 4.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRAGGMA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7:491:79 pos.-specific C ::::::3: probability G 2a6:9a:: matrix T 1::1:::1 bits 2.1 * * 1.9 * * 1.7 * * 1.5 * *** Relative 1.3 * *** * Entropy 1.1 ******* (11.4 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAGGAA consensus G A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGGMA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:143408087-143408107 12 1.54e-05 GCTGCACAGC AGGAGGAa a chr5:122756354-122756374 12 1.54e-05 cagggagtaa aggaggaa g chr21:35445523-35445543 5 4.64e-05 GAGG AGAAGGAA GGCATGGA chr4:159644091-159644111 2 4.64e-05 C AGGAGGCA AACCTAAAGG chr17:26924837-26924857 4 7.49e-05 tct agaaggca gagcaagag chr7:148424770-148424790 8 7.49e-05 GAAGAAG GGGAGGAA CTCTC chr12:48500565-48500585 1 1.17e-04 . TGGAGGAA TTTGAAACAG chr17:54911170-54911190 4 1.32e-04 GCG AGGAGGAT CCTCGTGGC chr11:65261536-65261556 12 1.32e-04 GGCCTGAGTC AGGAGGAT T chr6:167507027-167507047 9 1.63e-04 aaccctac ggaaggca ctgt chr16:89227898-89227918 3 1.63e-04 GT GGAAGGCA TGTTCCGGAA chr3:130613231-130613251 1 1.94e-04 . TGAAGGAA GGGGAGGTTC chr2:238512417-238512437 10 2.76e-04 GGAACTGTC AGGAAGCA TCT chr4:165816114-165816134 10 2.76e-04 ATGTGAAGG AGGTGGAA GCT chr6:15275111-15275131 11 2.76e-04 ACCTGCAGTT AGAAAGAA GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGGMA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:143408087-143408107 1.5e-05 11_[+5]_1 chr5:122756354-122756374 1.5e-05 11_[+5]_1 chr21:35445523-35445543 4.6e-05 4_[+5]_8 chr4:159644091-159644111 4.6e-05 1_[+5]_11 chr17:26924837-26924857 7.5e-05 3_[+5]_9 chr7:148424770-148424790 7.5e-05 7_[+5]_5 chr12:48500565-48500585 0.00012 [+5]_12 chr17:54911170-54911190 0.00013 3_[+5]_9 chr11:65261536-65261556 0.00013 11_[+5]_1 chr6:167507027-167507047 0.00016 8_[+5]_4 chr16:89227898-89227918 0.00016 2_[+5]_10 chr3:130613231-130613251 0.00019 [+5]_12 chr2:238512417-238512437 0.00028 9_[+5]_3 chr4:165816114-165816134 0.00028 9_[+5]_3 chr6:15275111-15275131 0.00028 10_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGGMA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRAGGMA width=8 seqs=15 chr8:143408087-143408107 ( 12) AGGAGGAA 1 chr5:122756354-122756374 ( 12) AGGAGGAA 1 chr21:35445523-35445543 ( 5) AGAAGGAA 1 chr4:159644091-159644111 ( 2) AGGAGGCA 1 chr17:26924837-26924857 ( 4) AGAAGGCA 1 chr7:148424770-148424790 ( 8) GGGAGGAA 1 chr12:48500565-48500585 ( 1) TGGAGGAA 1 chr17:54911170-54911190 ( 4) AGGAGGAT 1 chr11:65261536-65261556 ( 12) AGGAGGAT 1 chr6:167507027-167507047 ( 9) GGAAGGCA 1 chr16:89227898-89227918 ( 3) GGAAGGCA 1 chr3:130613231-130613251 ( 1) TGAAGGAA 1 chr2:238512417-238512437 ( 10) AGGAAGCA 1 chr4:165816114-165816134 ( 10) AGGTGGAA 1 chr6:15275111-15275131 ( 11) AGAAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGGMA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.0312 E= 4.3e+003 130 -1055 -22 -100 -1055 -1055 211 -1055 57 -1055 137 -1055 179 -1055 -1055 -200 -102 -1055 190 -1055 -1055 -1055 211 -1055 130 53 -1055 -1055 168 -1055 -1055 -100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGGMA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.3e+003 0.666667 0.000000 0.200000 0.133333 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.933333 0.000000 0.000000 0.066667 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.866667 0.000000 0.000000 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGGMA MEME-5 regular expression -------------------------------------------------------------------------------- [AG]G[GA]AGG[AC]A -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2679633-2679653 1.15e-04 6_[+1(2.00e-05)]_6 chr19:7124992-7125012 3.28e-06 10_[+1(3.72e-05)]_2 chr12:125399994-12540001 5.53e-01 20 chr7:138791891-138791911 4.89e-05 2_[+1(8.66e-05)]_10 chr12:1704561-1704581 2.35e-01 20 chr19:1354621-1354641 4.29e-03 20 chr9:129483956-129483976 7.18e-03 20 chr16:89227898-89227918 1.61e-04 12_[+1(6.92e-05)] chr10:121410932-12141095 6.44e-03 20 chr13:31363789-31363809 3.29e-02 11_[+2(3.19e-05)]_1 chr18:74827651-74827671 2.49e-04 [+3(1.25e-05)]_12 chr19:18740806-18740826 1.23e-03 10_[+2(9.80e-05)]_2 chr5:50254917-50254937 4.15e-02 20 chr4:103972271-103972291 9.43e-01 20 chr7:75924075-75924095 7.84e-01 20 chr7:142153408-142153428 7.51e-05 5_[+1(3.72e-05)]_7 chr8:10386143-10386163 1.88e-02 20 chr12:50900784-50900804 7.72e-01 20 chr1:183447301-183447321 7.34e-02 20 chr1:224306579-224306599 5.52e-01 20 chr19:54693584-54693604 1.79e-02 20 chr16:89050711-89050731 9.06e-02 [+2(9.80e-05)]_12 chr10:74836802-74836822 9.96e-01 20 chr16:89040002-89040022 8.92e-03 20 chr1:230031425-230031445 3.11e-01 20 chr11:6649263-6649283 1.47e-02 8_[+1(2.00e-05)]_4 chr15:74691657-74691677 3.26e-02 20 chr1:230305705-230305725 2.53e-02 20 chr5:135547980-135548000 2.35e-03 2_[+1(5.44e-05)]_10 chr15:38916877-38916897 4.86e-01 20 chr8:1724588-1724608 1.65e-01 20 chr17:7258435-7258455 5.81e-03 20 chr19:54692251-54692271 8.92e-01 20 chr1:161494225-161494245 4.57e-02 20 chr7:73089258-73089278 5.17e-04 9_[+1(5.44e-05)]_3 chr19:2398938-2398958 2.33e-05 3_[+1(2.00e-05)]_9 chr16:11633658-11633678 6.65e-04 12_[+1(5.44e-05)] chrX:102942998-102943018 4.02e-01 20 chr8:27326170-27326190 4.90e-06 2_[+3(1.25e-05)]_2_[+3(1.25e-05)] chrX:100670619-100670639 2.83e-04 2_[+1(3.72e-05)]_10 chr19:18100440-18100460 4.00e-05 4_[+1(5.44e-05)]_8 chr12:108055794-10805581 8.97e-01 20 chr1:3400532-3400552 4.37e-03 5_[+4(9.27e-06)]_7 chr6:108581649-108581669 5.26e-03 20 chr2:242905556-242905576 2.97e-01 20 chrX:19895738-19895758 5.61e-04 20 chr3:130613231-130613251 4.34e-02 20 chr10:11252532-11252552 5.08e-01 20 chr12:48500565-48500585 7.83e-02 20 chr19:5864208-5864228 1.58e-04 3_[+1(3.72e-05)]_9 chr10:74014463-74014483 2.07e-02 20 chr7:104994460-104994480 6.51e-07 11_[+3(1.25e-05)]_1 chr3:149292372-149292392 5.23e-02 20 chr17:26880664-26880684 1.00e+00 20 chr10:73457884-73457904 4.83e-04 4_[+1(3.72e-05)]_8 chr17:44267647-44267667 6.98e-05 6_[+1(3.72e-05)]_6 chr1:183014245-183014265 8.10e-01 20 chr5:54600010-54600030 1.35e-02 9_[+1(2.00e-05)]_3 chr19:5865305-5865325 8.04e-02 20 chr13:31735078-31735098 9.57e-03 20 chr5:55401654-55401674 1.54e-03 20 chr20:45982648-45982668 2.49e-05 5_[+1(3.72e-05)]_7 chr1:235017241-235017261 7.84e-04 20 chr14:77379820-77379840 4.42e-03 20 chr12:122062814-12206283 1.30e-01 20 chr11:133906966-13390698 5.89e-01 20 chr19:49334411-49334431 1.95e-01 20 chr8:26437594-26437614 9.81e-01 20 chr12:49975041-49975061 4.73e-01 20 chr9:21031740-21031760 3.42e-01 20 chr7:27774380-27774400 1.06e-01 20 chr2:179995473-179995493 7.92e-01 20 chr4:159644091-159644111 1.16e-02 1_[+5(4.64e-05)]_11 chr19:4763212-4763232 1.45e-01 20 chr10:52146882-52146902 8.04e-01 20 chr19:10512405-10512425 2.65e-04 7_[+1(5.44e-05)]_5 chr8:103597030-103597050 9.26e-01 20 chr6:30652673-30652693 1.75e-01 20 chr19:11230963-11230983 8.29e-04 7_[+1(5.44e-05)]_5 chr11:65261536-65261556 1.14e-01 20 chr20:32602873-32602893 4.85e-01 20 chr15:52135811-52135831 1.21e-03 1_[+1(3.72e-05)]_11 chr15:60973716-60973736 9.55e-01 20 chrX:27354761-27354781 8.98e-04 20 chr5:122756354-122756374 4.58e-02 11_[+5(1.54e-05)]_1 chr17:13413007-13413027 8.08e-01 20 chr1:68270620-68270640 5.19e-02 20 chr9:136292967-136292987 2.79e-04 11_[+1(2.00e-05)]_1 chr19:48282477-48282497 8.08e-01 20 chr3:30709094-30709114 8.02e-01 20 chr1:45987129-45987149 2.57e-01 20 chr6:44215547-44215567 5.81e-01 20 chr13:28580732-28580752 4.94e-01 20 chr8:11311531-11311551 5.77e-01 20 chr1:22493069-22493089 5.89e-01 20 chr19:5968154-5968174 6.18e-02 20 chr8:143408087-143408107 1.14e-02 11_[+5(1.54e-05)]_1 chr11:70027914-70027934 4.48e-02 20 chr1:181056858-181056878 7.54e-03 20 chr4:17582117-17582137 5.03e-02 20 chr9:130039595-130039615 6.52e-01 20 chr6:31783126-31783146 3.28e-01 20 chr7:150020739-150020759 3.18e-01 20 chr19:2049606-2049626 1.61e-04 20 chr11:32850795-32850815 8.35e-01 20 chr22:27020156-27020176 4.80e-05 12_[+1(2.00e-05)] chr17:48929641-48929661 4.65e-02 20 chr6:15275111-15275131 1.08e-01 20 chr8:26161528-26161548 9.36e-01 20 chr9:2839613-2839633 1.29e-02 20 chr21:35445523-35445543 4.30e-02 4_[+5(4.64e-05)]_8 chr6:31789963-31789983 6.29e-03 12_[+3(9.22e-05)] chr6:138224982-138225002 1.32e-01 20 chr1:221910869-221910889 7.16e-01 20 chr16:50279625-50279645 1.95e-06 5_[+3(1.25e-05)]_7 chr2:231522019-231522039 5.30e-04 11_[+2(4.67e-05)]_1 chr5:172199665-172199685 1.33e-01 20 chr4:128703310-128703330 1.23e-01 20 chr17:40168467-40168487 4.41e-06 9_[+2(1.47e-05)]_3 chr12:103864665-10386468 1.13e-01 20 chr17:64563420-64563440 4.85e-01 20 chr12:65278669-65278689 1.00e+00 20 chr8:61682512-61682532 6.78e-01 20 chr10:88691625-88691645 1.36e-02 1_[+1(2.00e-05)]_11 chr17:55979163-55979183 2.79e-01 20 chr4:114821073-114821093 9.76e-01 20 chr10:34727937-34727957 7.88e-01 20 chr19:2678309-2678329 9.55e-06 1_[+1(5.44e-05)]_2_[+1(3.72e-05)]_1 chr4:165816114-165816134 1.20e-01 20 chr12:104356439-10435645 5.46e-04 7_[+1(2.00e-05)]_5 chr22:17745382-17745402 1.03e-07 7_[+3(1.25e-05)]_5 chr18:54745547-54745567 1.73e-01 20 chr5:158383706-158383726 1.13e-01 20 chrX:108779708-108779728 1.61e-06 5_[+1(3.72e-05)]_7 chr12:112125292-11212531 9.49e-01 20 chr7:148424770-148424790 1.38e-02 7_[+5(7.49e-05)]_5 chr14:93522995-93523015 4.20e-05 11_[+1(3.72e-05)]_1 chr17:26924837-26924857 6.12e-02 3_[+5(7.49e-05)]_9 chr17:73110910-73110930 7.46e-03 20 chr2:109191933-109191953 5.48e-02 20 chr7:150792913-150792933 6.18e-01 20 chr9:19441873-19441893 7.23e-01 20 chr14:64204339-64204359 8.94e-01 20 chrX:47400619-47400639 5.55e-04 20 chr17:73850739-73850759 1.19e-02 20 chr16:48647462-48647482 5.78e-01 20 chr17:7790834-7790854 3.52e-01 20 chr4:121898950-121898970 2.59e-02 20 chr22:38072773-38072793 1.75e-01 20 chr15:57589584-57589604 2.39e-04 20 chr4:114316078-114316098 1.97e-01 20 chr18:19284881-19284901 2.23e-01 20 chr2:24731323-24731343 5.22e-04 20 chr16:89930354-89930374 9.34e-04 20 chr14:75959797-75959817 3.84e-01 20 chr1:85744756-85744776 5.72e-02 20 chr6:149819296-149819316 1.48e-01 20 chr12:6387233-6387253 1.20e-01 20 chr4:147188541-147188561 1.03e-07 9_[+2(1.47e-05)]_3 chr10:7449979-7449999 1.41e-01 20 chr2:150440455-150440475 5.25e-01 20 chr12:2904003-2904023 1.68e-01 20 chr7:69507654-69507674 1.18e-02 4_[+2(9.80e-05)]_8 chr1:193180896-193180916 2.06e-03 [+1(5.44e-05)]_12 chr4:186180312-186180332 2.61e-02 20 chr16:17300787-17300807 4.41e-03 20 chr19:16493625-16493645 1.99e-03 8_[+2(3.19e-05)]_4 chr1:20024916-20024936 3.71e-01 20 chr11:75273204-75273224 4.68e-02 20 chr6:152086828-152086848 3.34e-01 20 chr15:81590374-81590394 5.27e-01 20 chrX:102118929-102118949 3.93e-03 11_[+1(2.00e-05)]_1 chr21:44395056-44395076 4.09e-04 11_[+1(5.44e-05)]_1 chr12:54833541-54833561 6.41e-01 20 chr2:238512417-238512437 4.42e-03 20 chrX:53110213-53110233 2.66e-01 20 chr6:31782561-31782581 8.22e-01 20 chr4:132380907-132380927 9.41e-01 20 chr12:122228203-12222822 8.14e-01 20 chr5:115963189-115963209 2.69e-01 20 chr16:67838038-67838058 1.34e-03 20 chr17:54911170-54911190 3.14e-02 20 chr8:103871701-103871721 9.28e-02 20 chr2:232258971-232258991 7.74e-03 12_[+3(5.26e-05)] chr7:24860757-24860777 7.63e-01 20 chr18:10851877-10851897 2.17e-01 20 chr15:42787269-42787289 2.58e-05 8_[+1(3.72e-05)]_4 chr6:45613158-45613178 9.87e-04 20 chr1:16162277-16162297 1.29e-04 9_[+1(3.72e-05)]_3 chr17:64982109-64982129 2.59e-04 6_[+1(3.72e-05)]_6 chr7:75932928-75932948 9.13e-03 8_[+2(9.80e-05)]_4 chr3:141118959-141118979 1.29e-06 4_[+3(6.49e-05)]_8 chr4:56301477-56301497 2.03e-03 20 chr9:139781228-139781248 5.90e-01 20 chr19:920948-920968 9.41e-01 20 chr4:43765270-43765290 6.49e-04 6_[+1(2.00e-05)]_6 chr6:32980808-32980828 1.23e-02 20 chr20:10533208-10533228 1.28e-02 10_[+3(7.76e-05)]_2 chr6:167507027-167507047 2.38e-02 20 chr3:8810715-8810735 5.95e-01 20 chr19:3133760-3133780 2.35e-04 3_[+1(2.00e-05)]_9 chr19:3756918-3756938 3.60e-01 20 chr18:42210242-42210262 9.23e-01 20 chr16:3301328-3301348 3.72e-04 1_[+2(3.19e-05)]_11 chr8:29940869-29940889 1.08e-02 20 chr19:1548922-1548942 6.61e-06 10_[+1(2.00e-05)]_2 chr16:87981922-87981942 7.45e-01 20 chr12:77154402-77154422 2.65e-01 20 chr1:145454745-145454765 2.26e-03 20 chr9:109863834-109863854 3.87e-03 12_[+3(1.25e-05)] chr5:96042476-96042496 3.57e-02 20 chr21:45564801-45564821 1.01e-02 20 chr10:22910416-22910436 4.76e-01 20 chr13:41885982-41886002 4.17e-01 20 chr1:43413013-43413033 1.20e-02 2_[+2(9.80e-05)]_10 chr22:24109022-24109042 3.08e-02 12_[+4(9.27e-06)] chr17:73996632-73996652 4.56e-01 20 chr12:124522063-12452208 7.60e-01 20 chr3:72004763-72004783 1.92e-01 20 chr12:49629043-49629063 4.21e-03 11_[+3(6.49e-05)]_1 chr8:19495334-19495354 2.76e-01 20 chr16:22368769-22368789 9.37e-01 20 chr6:167529125-167529145 4.04e-02 20 chr19:14629247-14629267 3.29e-05 20 chr1:66740558-66740578 1.50e-04 [+1(2.00e-05)]_12 chr14:24058492-24058512 3.98e-03 11_[+1(3.72e-05)]_1 chr2:212946059-212946079 9.56e-01 20 chr11:62334991-62335011 2.01e-05 8_[+3(3.79e-05)]_4 chr2:82567181-82567201 9.38e-04 5_[+1(5.44e-05)]_7 chr11:129143717-12914373 3.19e-04 4_[+1(2.00e-05)]_8 chr8:135732885-135732905 1.24e-01 20 chr18:48406336-48406356 9.44e-01 20 chr9:139636438-139636458 2.54e-02 20 chr5:158528578-158528598 3.04e-01 20 chr5:131563511-131563531 2.09e-02 20 chr12:94657184-94657204 1.84e-04 20 chr4:39471168-39471188 5.21e-05 6_[+1(3.72e-05)]_6 chr3:196001731-196001751 2.16e-02 [+2(3.19e-05)]_12 chr16:27192502-27192522 1.88e-01 20 chr2:85766762-85766782 9.23e-01 20 chr1:25260879-25260899 4.36e-02 20 chr19:17516435-17516455 1.80e-01 20 chr2:44271509-44271529 4.23e-05 20 chr2:12570857-12570877 9.98e-01 20 chr6:157948592-157948612 2.24e-05 2_[+3(1.25e-05)]_10 chr11:117689111-11768913 6.71e-06 12_[+1(2.00e-05)] chr20:43094023-43094043 1.62e-04 3_[+1(2.00e-05)]_9 chr1:111505911-111505931 3.24e-06 8_[+1(3.72e-05)]_4 chr16:87905280-87905300 5.16e-01 20 chr8:129142446-129142466 5.73e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************