******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/HDAC2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:48937242-48937262 1.0000 20 chr6:43044224-43044244 1.0000 20 chr18:24237238-24237258 1.0000 20 chr17:43972930-43972950 1.0000 20 chr16:15950991-15951011 1.0000 20 chr17:67411072-67411092 1.0000 20 chr8:58165233-58165253 1.0000 20 chr12:131531482-13153150 1.0000 20 chr6:144606577-144606597 1.0000 20 chr2:62733269-62733289 1.0000 20 chr10:64575418-64575438 1.0000 20 chr19:10531546-10531566 1.0000 20 chr11:57281821-57281841 1.0000 20 chr8:41997876-41997896 1.0000 20 chr2:242699800-242699820 1.0000 20 chr3:69591217-69591237 1.0000 20 chr16:29828108-29828128 1.0000 20 chr12:49582547-49582567 1.0000 20 chr3:32822925-32822945 1.0000 20 chr6:13487376-13487396 1.0000 20 chr17:67411272-67411292 1.0000 20 chr11:35640866-35640886 1.0000 20 chr10:52177858-52177878 1.0000 20 chr2:47748288-47748308 1.0000 20 chr16:90098636-90098656 1.0000 20 chr10:75671320-75671340 1.0000 20 chr15:36872332-36872352 1.0000 20 chr6:4135338-4135358 1.0000 20 chr17:20756154-20756174 1.0000 20 chr3:194208352-194208372 1.0000 20 chr1:59250315-59250335 1.0000 20 chr10:5690378-5690398 1.0000 20 chr2:225907098-225907118 1.0000 20 chr4:178231080-178231100 1.0000 20 chr14:58618643-58618663 1.0000 20 chr2:133023539-133023559 1.0000 20 chr17:41791199-41791219 1.0000 20 chr1:65613373-65613393 1.0000 20 chr9:93955706-93955726 1.0000 20 chr20:61733741-61733761 1.0000 20 chr8:94712805-94712825 1.0000 20 chr19:6671060-6671080 1.0000 20 chr1:12138810-12138830 1.0000 20 chr19:16371182-16371202 1.0000 20 chr12:109248914-10924893 1.0000 20 chr2:62733472-62733492 1.0000 20 chr12:113666495-11366651 1.0000 20 chr17:1419511-1419531 1.0000 20 chr4:154074569-154074589 1.0000 20 chr20:49427571-49427591 1.0000 20 chr19:2475515-2475535 1.0000 20 chr6:41473118-41473138 1.0000 20 chr7:114560027-114560047 1.0000 20 chr1:144533282-144533302 1.0000 20 chr21:33651210-33651230 1.0000 20 chr10:125919669-12591968 1.0000 20 chr12:95043563-95043583 1.0000 20 chr11:58912316-58912336 1.0000 20 chr10:64578434-64578454 1.0000 20 chr21:48087355-48087375 1.0000 20 chr1:155829424-155829444 1.0000 20 chr12:65220211-65220231 1.0000 20 chr3:45018185-45018205 1.0000 20 chr22:26880094-26880114 1.0000 20 chr6:157389717-157389737 1.0000 20 chr19:54663184-54663204 1.0000 20 chr17:73290812-73290832 1.0000 20 chr1:180200692-180200712 1.0000 20 chr2:97001648-97001668 1.0000 20 chr10:130262779-13026279 1.0000 20 chr22:50050631-50050651 1.0000 20 chr19:49092174-49092194 1.0000 20 chr19:13957216-13957236 1.0000 20 chr4:185655085-185655105 1.0000 20 chr12:53614403-53614423 1.0000 20 chr17:45398344-45398364 1.0000 20 chr19:1065066-1065086 1.0000 20 chr19:39989965-39989985 1.0000 20 chr1:245082172-245082192 1.0000 20 chr16:88729191-88729211 1.0000 20 chr11:103769109-10376912 1.0000 20 chr2:75427968-75427988 1.0000 20 chr19:10542031-10542051 1.0000 20 chr3:47844931-47844951 1.0000 20 chr7:127033129-127033149 1.0000 20 chr9:126872740-126872760 1.0000 20 chr19:12176040-12176060 1.0000 20 chr8:95565485-95565505 1.0000 20 chr16:85587444-85587464 1.0000 20 chr17:75320951-75320971 1.0000 20 chr1:153822133-153822153 1.0000 20 chr7:70060977-70060997 1.0000 20 chr9:108457576-108457596 1.0000 20 chr6:37523964-37523984 1.0000 20 chr10:5727178-5727198 1.0000 20 chr1:167189527-167189547 1.0000 20 chr20:62670039-62670059 1.0000 20 chr4:128702953-128702973 1.0000 20 chr19:7766572-7766592 1.0000 20 chr1:109656520-109656540 1.0000 20 chr14:50779224-50779244 1.0000 20 chr19:4233709-4233729 1.0000 20 chr1:210502320-210502340 1.0000 20 chr12:94541850-94541870 1.0000 20 chr4:120987783-120987803 1.0000 20 chr6:153304103-153304123 1.0000 20 chr15:40987509-40987529 1.0000 20 chr2:191208827-191208847 1.0000 20 chr9:34637295-34637315 1.0000 20 chr7:36429645-36429665 1.0000 20 chr6:167412432-167412452 1.0000 20 chr1:39956624-39956644 1.0000 20 chr1:167191902-167191922 1.0000 20 chr9:99181582-99181602 1.0000 20 chr5:42951686-42951706 1.0000 20 chr11:35684824-35684844 1.0000 20 chr8:27632130-27632150 1.0000 20 chr3:53290368-53290388 1.0000 20 chr22:42337027-42337047 1.0000 20 chr18:47901513-47901533 1.0000 20 chr5:43604218-43604238 1.0000 20 chr6:7390513-7390533 1.0000 20 chr13:28397203-28397223 1.0000 20 chr5:42757012-42757032 1.0000 20 chr6:64215366-64215386 1.0000 20 chr12:11918562-11918582 1.0000 20 chr14:61188688-61188708 1.0000 20 chr19:2051711-2051731 1.0000 20 chr3:27763755-27763775 1.0000 20 chr3:122102002-122102022 1.0000 20 chr2:113521970-113521990 1.0000 20 chr17:17398548-17398568 1.0000 20 chr15:40886564-40886584 1.0000 20 chr11:66314102-66314122 1.0000 20 chr9:66455843-66455863 1.0000 20 chr3:157816082-157816102 1.0000 20 chr10:102456262-10245628 1.0000 20 chr1:52869930-52869950 1.0000 20 chr16:23568322-23568342 1.0000 20 chr10:102820357-10282037 1.0000 20 chr7:105701970-105701990 1.0000 20 chr18:34850222-34850242 1.0000 20 chr1:12148267-12148287 1.0000 20 chr5:176264796-176264816 1.0000 20 chr15:91498613-91498633 1.0000 20 chr9:66456673-66456693 1.0000 20 chr15:69745543-69745563 1.0000 20 chr20:44441402-44441422 1.0000 20 chr1:3582804-3582824 1.0000 20 chr6:159240767-159240787 1.0000 20 chr3:150264970-150264990 1.0000 20 chr2:65092785-65092805 1.0000 20 chr22:37651768-37651788 1.0000 20 chr19:12848544-12848564 1.0000 20 chr4:153585026-153585046 1.0000 20 chr7:43909688-43909708 1.0000 20 chr6:16592536-16592556 1.0000 20 chr19:6518557-6518577 1.0000 20 chr3:196230134-196230154 1.0000 20 chr6:163834728-163834748 1.0000 20 chr6:34641967-34641987 1.0000 20 chr1:156542244-156542264 1.0000 20 chr15:72766929-72766949 1.0000 20 chr11:11642793-11642813 1.0000 20 chr19:19144845-19144865 1.0000 20 chr12:54610210-54610230 1.0000 20 chr17:28618777-28618797 1.0000 20 chr17:26925883-26925903 1.0000 20 chr10:6016249-6016269 1.0000 20 chr2:10262923-10262943 1.0000 20 chr16:67880361-67880381 1.0000 20 chr3:108308131-108308151 1.0000 20 chr1:144931736-144931756 1.0000 20 chr14:55878471-55878491 1.0000 20 chr14:65006590-65006610 1.0000 20 chr11:43665854-43665874 1.0000 20 chr19:3036100-3036120 1.0000 20 chr2:131100801-131100821 1.0000 20 chr19:47103674-47103694 1.0000 20 chr19:50490594-50490614 1.0000 20 chr13:24040503-24040523 1.0000 20 chr19:12943365-12943385 1.0000 20 chr3:49893827-49893847 1.0000 20 chr14:23939047-23939067 1.0000 20 chr17:48796713-48796733 1.0000 20 chr9:86571363-86571383 1.0000 20 chr3:48229791-48229811 1.0000 20 chr1:28241561-28241581 1.0000 20 chr2:170336118-170336138 1.0000 20 chr17:38444207-38444227 1.0000 20 chr20:17950012-17950032 1.0000 20 chr1:200589626-200589646 1.0000 20 chr6:126661372-126661392 1.0000 20 chr4:122744922-122744942 1.0000 20 chr20:54967137-54967157 1.0000 20 chr18:19265526-19265546 1.0000 20 chr12:58145965-58145985 1.0000 20 chr17:27182119-27182139 1.0000 20 chr16:27412808-27412828 1.0000 20 chr3:171178579-171178599 1.0000 20 chr17:4607355-4607375 1.0000 20 chr12:113591105-11359112 1.0000 20 chr2:38829794-38829814 1.0000 20 chr14:71067266-71067286 1.0000 20 chr2:231791211-231791231 1.0000 20 chr8:48920753-48920773 1.0000 20 chr2:111435503-111435523 1.0000 20 chr10:11220159-11220179 1.0000 20 chr19:45550769-45550789 1.0000 20 chr15:41624571-41624591 1.0000 20 chr21:34696920-34696940 1.0000 20 chr1:214776704-214776724 1.0000 20 chr6:158957355-158957375 1.0000 20 chr15:48624552-48624572 1.0000 20 chr3:194991557-194991577 1.0000 20 chr14:74058792-74058812 1.0000 20 chr12:25056154-25056174 1.0000 20 chr17:8113840-8113860 1.0000 20 chr1:26946852-26946872 1.0000 20 chr8:80929552-80929572 1.0000 20 chr10:129924642-12992466 1.0000 20 chr13:42615392-42615412 1.0000 20 chr17:66032055-66032075 1.0000 20 chr1:145039848-145039868 1.0000 20 chr1:16970829-16970849 1.0000 20 chr17:33288637-33288657 1.0000 20 chr8:29207523-29207543 1.0000 20 chr19:8399849-8399869 1.0000 20 chr17:33759812-33759832 1.0000 20 chr3:39093634-39093654 1.0000 20 chr12:776074-776094 1.0000 20 chr1:166134383-166134403 1.0000 20 chr12:49717137-49717157 1.0000 20 chr1:228674402-228674422 1.0000 20 chr16:46655216-46655236 1.0000 20 chr18:12050516-12050536 1.0000 20 chr6:132816957-132816977 1.0000 20 chr6:119558601-119558621 1.0000 20 chr2:220094792-220094812 1.0000 20 chr17:76210459-76210479 1.0000 20 chrX:7896067-7896087 1.0000 20 chr16:30583678-30583698 1.0000 20 chr15:40882316-40882336 1.0000 20 chr15:56757467-56757487 1.0000 20 chr13:111124029-11112404 1.0000 20 chr4:153473300-153473320 1.0000 20 chr19:2427367-2427387 1.0000 20 chr9:102007079-102007099 1.0000 20 chr1:15742332-15742352 1.0000 20 chr8:145743078-145743098 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_HDAC2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/HDAC2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.195 C 0.306 G 0.312 T 0.188 Background letter frequencies (from file dataset with add-one prior applied): A 0.195 C 0.306 G 0.312 T 0.188 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WGTATTTT MEME-1 width = 8 sites = 12 llr = 113 E-value = 8.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGTATTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:38::23 pos.-specific C :1:2:::: probability G :8:::::: matrix T 628:aa88 bits 2.4 ** 2.2 ** 1.9 ** 1.7 ****** Relative 1.4 * ****** Entropy 1.2 * ****** (13.5 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTATTTT consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTATTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:34641967-34641987 8 2.69e-06 taatttt tgtatttt tagta chr12:113666495-11366651 2 2.69e-06 c tgtatttt acagaggagg chr19:19144845-19144865 9 2.01e-05 AAAATGAA AGAATTTT ACAG chr10:125919669-12591968 7 2.01e-05 ccacac agtattta acacaa chr3:196230134-196230154 10 3.00e-05 TTGTGTTTC AGTATTAT GCC chr12:109248914-10924893 2 3.00e-05 g agtattat acagccatga chr17:67411272-67411292 11 3.00e-05 GTTTAGTATG TGTCTTTT TT chr12:776074-776094 2 3.34e-05 c tttattta caaaaagagt chr12:11918562-11918582 9 3.34e-05 CTGAGAGA TTAATTTT TGTA chr16:27412808-27412828 3 3.60e-05 TC TCTATTTT CTTCTTGAAT chr9:86571363-86571383 13 3.89e-05 TTTTCTGCAA TGAATTTA chr17:67411072-67411092 13 4.33e-05 AGCAAGGCAA AGTCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTATTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:34641967-34641987 2.7e-06 7_[+1]_5 chr12:113666495-11366651 2.7e-06 1_[+1]_11 chr19:19144845-19144865 2e-05 8_[+1]_4 chr10:125919669-12591968 2e-05 6_[+1]_6 chr3:196230134-196230154 3e-05 9_[+1]_3 chr12:109248914-10924893 3e-05 1_[+1]_11 chr17:67411272-67411292 3e-05 10_[+1]_2 chr12:776074-776094 3.3e-05 1_[+1]_11 chr12:11918562-11918582 3.3e-05 8_[+1]_4 chr16:27412808-27412828 3.6e-05 2_[+1]_10 chr9:86571363-86571383 3.9e-05 12_[+1] chr17:67411072-67411092 4.3e-05 12_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTATTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGTATTTT width=8 seqs=12 chr6:34641967-34641987 ( 8) TGTATTTT 1 chr12:113666495-11366651 ( 2) TGTATTTT 1 chr19:19144845-19144865 ( 9) AGAATTTT 1 chr10:125919669-12591968 ( 7) AGTATTTA 1 chr3:196230134-196230154 ( 10) AGTATTAT 1 chr12:109248914-10924893 ( 2) AGTATTAT 1 chr17:67411272-67411292 ( 11) TGTCTTTT 1 chr12:776074-776094 ( 2) TTTATTTA 1 chr12:11918562-11918582 ( 9) TTAATTTT 1 chr16:27412808-27412828 ( 3) TCTATTTT 1 chr9:86571363-86571383 ( 13) TGAATTTA 1 chr17:67411072-67411092 ( 13) AGTCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTATTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.17831 E= 8.3e-004 109 -1023 -1023 164 -1023 -187 127 -17 36 -1023 -1023 200 209 -87 -1023 -1023 -1023 -1023 -1023 241 -1023 -1023 -1023 241 -23 -1023 -1023 215 36 -1023 -1023 200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTATTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 8.3e-004 0.416667 0.000000 0.000000 0.583333 0.000000 0.083333 0.750000 0.166667 0.250000 0.000000 0.000000 0.750000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.000000 0.833333 0.250000 0.000000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGTATTTT MEME-1 regular expression -------------------------------------------------------------------------------- [TA]G[TA]ATTT[TA] -------------------------------------------------------------------------------- Time 4.83 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAACARA MEME-2 width = 8 sites = 12 llr = 100 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8a89294a pos.-specific C 2:::5:2: probability G ::2:214: matrix T 1::12::: bits 2.4 * * 2.2 * * 1.9 * * * * 1.7 *** * * Relative 1.4 *** * * Entropy 1.2 **** * * (12.0 bits) 1.0 **** * * 0.7 **** * * 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel AAAACAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:167191902-167191922 11 3.28e-06 CTCTGCGGGC AAAACAAA CT chr17:20756154-20756174 6 8.53e-06 GGGAG AAAACAGA GCTGGTG chr3:171178579-171178599 7 1.26e-05 CGGAGG AAAAAAAA GCGACA chr16:23568322-23568342 2 2.77e-05 A AAAACACA AGAAACTCCT chr9:102007079-102007099 12 3.31e-05 tagagaaaga aaaagaga a chr3:150264970-150264990 9 4.99e-05 TAAGAACA AAGACAAA CATG chr11:66314102-66314122 5 8.63e-05 ggag taaacaga ctcagaga chr3:194208352-194208372 5 1.12e-04 ATGC AAATTAAA TACTTCCC chr12:776074-776094 10 1.35e-04 ctttattta caaaaaga gtc chr12:53614403-53614423 6 1.75e-04 TTGTG CAAACACA CCTTGCT chr19:19144845-19144865 1 1.93e-04 . AAAATGAA AGAATTTTAC chr22:37651768-37651788 4 2.18e-04 aga aagagaga aggaagaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:167191902-167191922 3.3e-06 10_[+2]_2 chr17:20756154-20756174 8.5e-06 5_[+2]_7 chr3:171178579-171178599 1.3e-05 6_[+2]_6 chr16:23568322-23568342 2.8e-05 1_[+2]_11 chr9:102007079-102007099 3.3e-05 11_[+2]_1 chr3:150264970-150264990 5e-05 8_[+2]_4 chr11:66314102-66314122 8.6e-05 4_[+2]_8 chr3:194208352-194208372 0.00011 4_[+2]_8 chr12:776074-776094 0.00014 9_[+2]_3 chr12:53614403-53614423 0.00017 5_[+2]_7 chr19:19144845-19144865 0.00019 [+2]_12 chr22:37651768-37651788 0.00022 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACARA width=8 seqs=12 chr1:167191902-167191922 ( 11) AAAACAAA 1 chr17:20756154-20756174 ( 6) AAAACAGA 1 chr3:171178579-171178599 ( 7) AAAAAAAA 1 chr16:23568322-23568342 ( 2) AAAACACA 1 chr9:102007079-102007099 ( 12) AAAAGAGA 1 chr3:150264970-150264990 ( 9) AAGACAAA 1 chr11:66314102-66314122 ( 5) TAAACAGA 1 chr3:194208352-194208372 ( 5) AAATTAAA 1 chr12:776074-776094 ( 10) CAAAAAGA 1 chr12:53614403-53614423 ( 6) CAAACACA 1 chr19:19144845-19144865 ( 1) AAAATGAA 1 chr22:37651768-37651788 ( 4) AAGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 2.0e+002 194 -87 -1023 -117 236 -1023 -1023 -1023 209 -1023 -90 -1023 223 -1023 -1023 -117 -23 71 -90 -17 223 -1023 -190 -1023 109 -87 42 -1023 236 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.0e+002 0.750000 0.166667 0.000000 0.083333 1.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.916667 0.000000 0.000000 0.083333 0.166667 0.500000 0.166667 0.166667 0.916667 0.000000 0.083333 0.000000 0.416667 0.166667 0.416667 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACARA MEME-2 regular expression -------------------------------------------------------------------------------- AAAACA[AG]A -------------------------------------------------------------------------------- Time 7.77 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTTCACC MEME-3 width = 8 sites = 3 llr = 34 E-value = 6.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTTCACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C a:::a:aa probability G :::::::: matrix T :aaa:::: bits 2.4 *** * 2.2 *** * 1.9 *** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTTCACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:65006590-65006610 2 1.14e-05 g ctttcacc atgttggcca chr1:153822133-153822153 8 1.14e-05 tttcact ctttcacc caggc chr20:49427571-49427591 6 1.14e-05 gacaa ctttcacc agtaaag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:65006590-65006610 1.1e-05 1_[+3]_11 chr1:153822133-153822153 1.1e-05 7_[+3]_5 chr20:49427571-49427591 1.1e-05 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTTCACC width=8 seqs=3 chr14:65006590-65006610 ( 2) CTTTCACC 1 chr1:153822133-153822153 ( 8) CTTTCACC 1 chr20:49427571-49427591 ( 6) CTTTCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 6.8e+002 -823 171 -823 -823 -823 -823 -823 241 -823 -823 -823 241 -823 -823 -823 241 -823 171 -823 -823 235 -823 -823 -823 -823 171 -823 -823 -823 171 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 6.8e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCACC MEME-3 regular expression -------------------------------------------------------------------------------- CTTTCACC -------------------------------------------------------------------------------- Time 10.64 secs. ******************************************************************************** ******************************************************************************** MOTIF YTATTTCT MEME-4 width = 8 sites = 2 llr = 24 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTATTTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C 5:::::a: probability G :::::::: matrix T 5a:aaa:a bits 2.4 ***** * 2.2 ***** * 1.9 ***** * 1.7 ******* Relative 1.4 ******* Entropy 1.2 ******* (17.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTATTTCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATTTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:16592536-16592556 4 2.63e-06 GGC TTATTTCT CACATATCC chr19:6518557-6518577 9 6.92e-06 ATACAAAC CTATTTCT GCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATTTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:16592536-16592556 2.6e-06 3_[+4]_9 chr19:6518557-6518577 6.9e-06 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATTTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTATTTCT width=8 seqs=2 chr6:16592536-16592556 ( 4) TTATTTCT 1 chr19:6518557-6518577 ( 9) CTATTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATTTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.1e+003 -765 71 -765 141 -765 -765 -765 241 235 -765 -765 -765 -765 -765 -765 241 -765 -765 -765 241 -765 -765 -765 241 -765 171 -765 -765 -765 -765 -765 241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATTTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+003 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTATTTCT MEME-4 regular expression -------------------------------------------------------------------------------- [CT]TATTTCT -------------------------------------------------------------------------------- Time 11.43 secs. ******************************************************************************** ******************************************************************************** MOTIF AWWCWCTT MEME-5 width = 8 sites = 7 llr = 64 E-value = 3.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWWCWCTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 946:4::: pos.-specific C :::a:9:: probability G :1:::::: matrix T 144:61aa bits 2.4 ** 2.2 ** 1.9 ** 1.7 * * ** Relative 1.4 * *** ** Entropy 1.2 * ****** (13.2 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAACTCTT consensus TT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWCWCTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:12148267-12148287 11 4.45e-06 ctttgcttac atactctt gg chr15:36872332-36872352 7 9.06e-06 CACACA AAACTCTT AACGGT chr1:28241561-28241581 8 1.33e-05 aggtcac attctctt cgtgt chr17:73290812-73290832 11 3.63e-05 gaagcaggag aatcactt ga chr13:28397203-28397223 5 6.03e-05 TCAG AAACATTT ACGCTAGA chr21:33651210-33651230 12 7.89e-05 GTCTTCGGAG AGTCTCTT G chr19:13957216-13957236 13 1.02e-04 ggccaggcga ttacactt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWCWCTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:12148267-12148287 4.4e-06 10_[+5]_2 chr15:36872332-36872352 9.1e-06 6_[+5]_6 chr1:28241561-28241581 1.3e-05 7_[+5]_5 chr17:73290812-73290832 3.6e-05 10_[+5]_2 chr13:28397203-28397223 6e-05 4_[+5]_8 chr21:33651210-33651230 7.9e-05 11_[+5]_1 chr19:13957216-13957236 0.0001 12_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWCWCTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWWCWCTT width=8 seqs=7 chr1:12148267-12148287 ( 11) ATACTCTT 1 chr15:36872332-36872352 ( 7) AAACTCTT 1 chr1:28241561-28241581 ( 8) ATTCTCTT 1 chr17:73290812-73290832 ( 11) AATCACTT 1 chr13:28397203-28397223 ( 5) AAACATTT 1 chr21:33651210-33651230 ( 12) AGTCTCTT 1 chr19:13957216-13957236 ( 13) TTACACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWCWCTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.46255 E= 3.4e+003 213 -945 -945 -39 113 -945 -112 119 155 -945 -945 119 -945 171 -945 -945 113 -945 -945 161 -945 149 -945 -39 -945 -945 -945 241 -945 -945 -945 241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWCWCTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.4e+003 0.857143 0.000000 0.000000 0.142857 0.428571 0.000000 0.142857 0.428571 0.571429 0.000000 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.571429 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWWCWCTT MEME-5 regular expression -------------------------------------------------------------------------------- A[AT][AT]C[TA]CTT -------------------------------------------------------------------------------- Time 12.15 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:48937242-48937262 1.00e+00 20 chr6:43044224-43044244 9.85e-01 20 chr18:24237238-24237258 3.89e-01 20 chr17:43972930-43972950 5.71e-01 20 chr16:15950991-15951011 1.00e+00 20 chr17:67411072-67411092 5.33e-05 12_[+1(4.33e-05)] chr8:58165233-58165253 3.24e-01 20 chr12:131531482-13153150 6.92e-01 20 chr6:144606577-144606597 9.18e-01 20 chr2:62733269-62733289 8.34e-02 20 chr10:64575418-64575438 9.81e-01 20 chr19:10531546-10531566 9.09e-01 20 chr11:57281821-57281841 2.16e-01 20 chr8:41997876-41997896 4.56e-01 20 chr2:242699800-242699820 9.91e-01 20 chr3:69591217-69591237 9.59e-01 20 chr16:29828108-29828128 9.61e-01 20 chr12:49582547-49582567 1.00e+00 20 chr3:32822925-32822945 1.00e+00 20 chr6:13487376-13487396 1.00e+00 20 chr17:67411272-67411292 1.18e-04 10_[+1(3.00e-05)]_2 chr11:35640866-35640886 1.00e+00 20 chr10:52177858-52177878 8.77e-01 20 chr2:47748288-47748308 1.00e+00 20 chr16:90098636-90098656 4.71e-01 20 chr10:75671320-75671340 9.99e-01 20 chr15:36872332-36872352 7.22e-06 6_[+5(9.06e-06)]_6 chr6:4135338-4135358 2.71e-02 20 chr17:20756154-20756174 2.50e-02 5_[+2(8.53e-06)]_7 chr3:194208352-194208372 3.36e-04 20 chr1:59250315-59250335 9.99e-01 20 chr10:5690378-5690398 2.55e-01 20 chr2:225907098-225907118 8.59e-01 20 chr4:178231080-178231100 1.00e+00 20 chr14:58618643-58618663 1.00e+00 20 chr2:133023539-133023559 4.56e-01 20 chr17:41791199-41791219 1.00e+00 20 chr1:65613373-65613393 1.00e+00 20 chr9:93955706-93955726 2.44e-01 20 chr20:61733741-61733761 1.00e+00 20 chr8:94712805-94712825 9.96e-01 20 chr19:6671060-6671080 1.92e-01 20 chr1:12138810-12138830 9.25e-02 20 chr19:16371182-16371202 1.19e-02 20 chr12:109248914-10924893 5.38e-03 1_[+1(3.00e-05)]_11 chr2:62733472-62733492 1.00e+00 20 chr12:113666495-11366651 8.21e-06 1_[+1(2.69e-06)]_11 chr17:1419511-1419531 7.86e-01 20 chr4:154074569-154074589 9.98e-01 20 chr20:49427571-49427591 2.43e-04 5_[+3(1.14e-05)]_7 chr19:2475515-2475535 2.06e-02 20 chr6:41473118-41473138 1.00e+00 20 chr7:114560027-114560047 2.40e-01 20 chr1:144533282-144533302 4.56e-02 20 chr21:33651210-33651230 5.19e-03 11_[+5(7.89e-05)]_1 chr10:125919669-12591968 5.99e-05 6_[+1(2.01e-05)]_6 chr12:95043563-95043583 9.92e-01 20 chr11:58912316-58912336 7.96e-01 20 chr10:64578434-64578454 4.07e-01 20 chr21:48087355-48087375 2.03e-01 20 chr1:155829424-155829444 4.89e-01 20 chr12:65220211-65220231 3.86e-01 20 chr3:45018185-45018205 8.52e-01 20 chr22:26880094-26880114 8.86e-01 20 chr6:157389717-157389737 6.33e-04 20 chr19:54663184-54663204 7.56e-03 20 chr17:73290812-73290832 2.22e-03 10_[+5(3.63e-05)]_2 chr1:180200692-180200712 1.00e+00 20 chr2:97001648-97001668 1.00e+00 20 chr10:130262779-13026279 7.96e-01 20 chr22:50050631-50050651 8.52e-01 20 chr19:49092174-49092194 1.00e+00 20 chr19:13957216-13957236 3.53e-03 20 chr4:185655085-185655105 9.76e-01 20 chr12:53614403-53614423 1.47e-02 20 chr17:45398344-45398364 1.65e-01 20 chr19:1065066-1065086 1.00e+00 20 chr19:39989965-39989985 9.82e-01 20 chr1:245082172-245082192 9.57e-01 20 chr16:88729191-88729211 1.00e+00 20 chr11:103769109-10376912 9.85e-03 20 chr2:75427968-75427988 1.00e+00 20 chr19:10542031-10542051 9.15e-02 20 chr3:47844931-47844951 1.00e+00 20 chr7:127033129-127033149 1.00e+00 20 chr9:126872740-126872760 2.89e-03 20 chr19:12176040-12176060 1.00e+00 20 chr8:95565485-95565505 1.60e-01 20 chr16:85587444-85587464 2.91e-01 20 chr17:75320951-75320971 5.90e-02 20 chr1:153822133-153822153 1.53e-05 7_[+3(1.14e-05)]_5 chr7:70060977-70060997 1.00e+00 20 chr9:108457576-108457596 2.10e-01 20 chr6:37523964-37523984 8.62e-01 20 chr10:5727178-5727198 9.99e-01 20 chr1:167189527-167189547 2.14e-01 20 chr20:62670039-62670059 9.82e-01 20 chr4:128702953-128702973 1.00e+00 20 chr19:7766572-7766592 2.59e-01 20 chr1:109656520-109656540 1.00e+00 20 chr14:50779224-50779244 2.15e-01 20 chr19:4233709-4233729 4.99e-01 20 chr1:210502320-210502340 1.00e+00 20 chr12:94541850-94541870 2.01e-01 20 chr4:120987783-120987803 3.11e-01 20 chr6:153304103-153304123 8.69e-01 20 chr15:40987509-40987529 9.59e-01 20 chr2:191208827-191208847 9.60e-01 20 chr9:34637295-34637315 9.22e-01 20 chr7:36429645-36429665 7.84e-01 20 chr6:167412432-167412452 2.52e-02 20 chr1:39956624-39956644 9.91e-01 20 chr1:167191902-167191922 1.38e-02 10_[+2(3.28e-06)]_2 chr9:99181582-99181602 1.00e+00 20 chr5:42951686-42951706 7.84e-01 20 chr11:35684824-35684844 7.97e-01 20 chr8:27632130-27632150 9.91e-01 20 chr3:53290368-53290388 6.19e-01 20 chr22:42337027-42337047 5.60e-02 20 chr18:47901513-47901533 9.50e-01 20 chr5:43604218-43604238 9.84e-01 20 chr6:7390513-7390533 7.86e-01 20 chr13:28397203-28397223 1.23e-04 4_[+5(6.03e-05)]_8 chr5:42757012-42757032 8.21e-03 20 chr6:64215366-64215386 9.47e-01 20 chr12:11918562-11918582 4.34e-05 8_[+1(3.34e-05)]_4 chr14:61188688-61188708 1.00e+00 20 chr19:2051711-2051731 8.82e-01 20 chr3:27763755-27763775 9.67e-01 20 chr3:122102002-122102022 1.95e-01 20 chr2:113521970-113521990 7.63e-01 20 chr17:17398548-17398568 7.82e-01 20 chr15:40886564-40886584 8.66e-01 20 chr11:66314102-66314122 4.03e-02 4_[+2(8.63e-05)]_8 chr9:66455843-66455863 9.90e-01 20 chr3:157816082-157816102 4.72e-01 20 chr10:102456262-10245628 8.39e-01 20 chr1:52869930-52869950 8.62e-01 20 chr16:23568322-23568342 1.08e-03 1_[+2(2.77e-05)]_11 chr10:102820357-10282037 6.50e-01 20 chr7:105701970-105701990 7.79e-02 20 chr18:34850222-34850242 3.57e-01 20 chr1:12148267-12148287 2.04e-04 10_[+5(4.45e-06)]_2 chr5:176264796-176264816 7.98e-01 20 chr15:91498613-91498633 4.17e-01 20 chr9:66456673-66456693 8.91e-01 20 chr15:69745543-69745563 9.99e-01 20 chr20:44441402-44441422 1.00e+00 20 chr1:3582804-3582824 2.16e-02 20 chr6:159240767-159240787 1.12e-01 20 chr3:150264970-150264990 4.12e-02 8_[+2(4.99e-05)]_4 chr2:65092785-65092805 4.77e-01 20 chr22:37651768-37651788 1.64e-01 20 chr19:12848544-12848564 6.56e-02 20 chr4:153585026-153585046 4.96e-01 20 chr7:43909688-43909708 1.00e+00 20 chr6:16592536-16592556 1.18e-04 3_[+4(2.63e-06)]_9 chr19:6518557-6518577 7.48e-05 8_[+4(6.92e-06)]_4 chr3:196230134-196230154 5.41e-04 9_[+1(3.00e-05)]_3 chr6:163834728-163834748 1.00e+00 20 chr6:34641967-34641987 8.98e-06 7_[+1(2.69e-06)]_5 chr1:156542244-156542264 1.59e-01 20 chr15:72766929-72766949 6.71e-01 20 chr11:11642793-11642813 1.00e+00 20 chr19:19144845-19144865 3.63e-06 8_[+1(2.01e-05)]_4 chr12:54610210-54610230 4.69e-01 20 chr17:28618777-28618797 9.51e-01 20 chr17:26925883-26925903 1.40e-01 20 chr10:6016249-6016269 8.13e-01 20 chr2:10262923-10262943 2.53e-01 20 chr16:67880361-67880381 8.47e-01 20 chr3:108308131-108308151 7.55e-01 20 chr1:144931736-144931756 1.00e+00 20 chr14:55878471-55878491 1.00e+00 20 chr14:65006590-65006610 5.15e-03 1_[+3(1.14e-05)]_11 chr11:43665854-43665874 5.97e-01 20 chr19:3036100-3036120 1.00e+00 20 chr2:131100801-131100821 6.99e-01 20 chr19:47103674-47103694 6.54e-01 20 chr19:50490594-50490614 3.99e-01 20 chr13:24040503-24040523 1.00e+00 20 chr19:12943365-12943385 1.00e+00 20 chr3:49893827-49893847 9.01e-01 20 chr14:23939047-23939067 9.96e-01 20 chr17:48796713-48796733 6.34e-01 20 chr9:86571363-86571383 2.95e-05 12_[+1(3.89e-05)] chr3:48229791-48229811 2.72e-01 20 chr1:28241561-28241581 8.93e-05 7_[+5(1.33e-05)]_5 chr2:170336118-170336138 1.04e-01 20 chr17:38444207-38444227 9.67e-01 20 chr20:17950012-17950032 4.71e-01 20 chr1:200589626-200589646 5.22e-01 20 chr6:126661372-126661392 7.95e-01 20 chr4:122744922-122744942 6.72e-01 20 chr20:54967137-54967157 8.99e-01 20 chr18:19265526-19265546 9.25e-01 20 chr12:58145965-58145985 1.00e+00 20 chr17:27182119-27182139 7.73e-01 20 chr16:27412808-27412828 1.39e-05 2_[+1(3.60e-05)]_10 chr3:171178579-171178599 5.24e-02 6_[+2(1.26e-05)]_6 chr17:4607355-4607375 1.00e+00 20 chr12:113591105-11359112 9.76e-01 20 chr2:38829794-38829814 1.00e+00 20 chr14:71067266-71067286 1.47e-01 20 chr2:231791211-231791231 9.90e-01 20 chr8:48920753-48920773 8.22e-01 20 chr2:111435503-111435523 9.96e-01 20 chr10:11220159-11220179 9.90e-01 20 chr19:45550769-45550789 9.62e-01 20 chr15:41624571-41624591 6.96e-01 20 chr21:34696920-34696940 4.42e-01 20 chr1:214776704-214776724 1.00e+00 20 chr6:158957355-158957375 9.31e-01 20 chr15:48624552-48624572 9.90e-01 20 chr3:194991557-194991577 7.44e-01 20 chr14:74058792-74058812 7.00e-01 20 chr12:25056154-25056174 5.07e-01 20 chr17:8113840-8113860 9.08e-01 20 chr1:26946852-26946872 1.00e+00 20 chr8:80929552-80929572 6.81e-02 20 chr10:129924642-12992466 1.00e+00 20 chr13:42615392-42615412 9.71e-01 20 chr17:66032055-66032075 4.95e-01 20 chr1:145039848-145039868 9.44e-01 20 chr1:16970829-16970849 7.72e-01 20 chr17:33288637-33288657 2.02e-01 20 chr8:29207523-29207543 9.70e-01 20 chr19:8399849-8399869 9.99e-01 20 chr17:33759812-33759832 9.44e-01 20 chr3:39093634-39093654 1.00e+00 20 chr12:776074-776094 3.50e-06 1_[+1(3.34e-05)]_11 chr1:166134383-166134403 6.04e-02 20 chr12:49717137-49717157 4.15e-01 20 chr1:228674402-228674422 8.20e-01 20 chr16:46655216-46655236 9.99e-01 20 chr18:12050516-12050536 4.74e-01 20 chr6:132816957-132816977 9.99e-01 20 chr6:119558601-119558621 9.17e-01 20 chr2:220094792-220094812 8.51e-01 20 chr17:76210459-76210479 6.03e-01 20 chrX:7896067-7896087 1.13e-01 20 chr16:30583678-30583698 7.49e-01 20 chr15:40882316-40882336 8.45e-01 20 chr15:56757467-56757487 2.73e-02 20 chr13:111124029-11112404 1.11e-01 20 chr4:153473300-153473320 1.52e-01 20 chr19:2427367-2427387 6.35e-01 20 chr9:102007079-102007099 5.52e-02 11_[+2(3.31e-05)]_1 chr1:15742332-15742352 1.52e-03 20 chr8:145743078-145743098 9.50e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************