******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/HCFC1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:7118445-7118465 1.0000 20 chr19:48866459-48866479 1.0000 20 chr17:40559695-40559715 1.0000 20 chr19:49013961-49013981 1.0000 20 chr19:48907043-48907063 1.0000 20 chr16:30908497-30908517 1.0000 20 chr19:49148218-49148238 1.0000 20 chr12:133532908-13353292 1.0000 20 chr16:30103291-30103311 1.0000 20 chr19:49310060-49310080 1.0000 20 chr19:48833462-48833482 1.0000 20 chr19:52097779-52097799 1.0000 20 chr6:43215054-43215074 1.0000 20 chr19:45988741-45988761 1.0000 20 chr3:14166399-14166419 1.0000 20 chr19:49362040-49362060 1.0000 20 chr9:97021518-97021538 1.0000 20 chr19:38397776-38397796 1.0000 20 chr1:6673662-6673682 1.0000 20 chr5:178157748-178157768 1.0000 20 chr4:18023818-18023838 1.0000 20 chr19:55817026-55817046 1.0000 20 chr1:224544483-224544503 1.0000 20 chr19:42463562-42463582 1.0000 20 chr19:49248641-49248661 1.0000 20 chr19:54682402-54682422 1.0000 20 chr19:44809231-44809251 1.0000 20 chr6:11093967-11093987 1.0000 20 chr11:134123362-13412338 1.0000 20 chr15:63481600-63481620 1.0000 20 chr19:49224392-49224412 1.0000 20 chr5:178286916-178286936 1.0000 20 chr19:507928-507948 1.0000 20 chr17:7358846-7358866 1.0000 20 chr4:8160705-8160725 1.0000 20 chr9:131965211-131965231 1.0000 20 chr4:2538162-2538182 1.0000 20 chr19:48922703-48922723 1.0000 20 chr10:111985633-11198565 1.0000 20 chr6:5003936-5003956 1.0000 20 chr18:9913611-9913631 1.0000 20 chr19:45908773-45908793 1.0000 20 chr17:76250671-76250691 1.0000 20 chr2:54950563-54950583 1.0000 20 chr7:93633706-93633726 1.0000 20 chr3:183735780-183735800 1.0000 20 chr21:35288176-35288196 1.0000 20 chr20:62694403-62694423 1.0000 20 chr19:57946580-57946600 1.0000 20 chr20:33735184-33735204 1.0000 20 chr16:46918170-46918190 1.0000 20 chr17:4634621-4634641 1.0000 20 chr1:2457702-2457722 1.0000 20 chr10:92631683-92631703 1.0000 20 chr16:70473227-70473247 1.0000 20 chr6:157801115-157801135 1.0000 20 chr2:86332712-86332732 1.0000 20 chr1:247095541-247095561 1.0000 20 chr14:65569308-65569328 1.0000 20 chr20:48732507-48732527 1.0000 20 chr2:170430445-170430465 1.0000 20 chr6:43597119-43597139 1.0000 20 chr11:114310091-11431011 1.0000 20 chr19:50651569-50651589 1.0000 20 chr1:47799931-47799951 1.0000 20 chr1:1051583-1051603 1.0000 20 chr19:46027195-46027215 1.0000 20 chr1:244816083-244816103 1.0000 20 chr11:60681344-60681364 1.0000 20 chr12:56710164-56710184 1.0000 20 chr11:64456070-64456090 1.0000 20 chr1:147142705-147142725 1.0000 20 chr8:124054132-124054152 1.0000 20 chr11:46134712-46134732 1.0000 20 chr10:43048374-43048394 1.0000 20 chr2:38893014-38893034 1.0000 20 chr16:68482643-68482663 1.0000 20 chr12:122985582-12298560 1.0000 20 chr3:126423008-126423028 1.0000 20 chr1:154979468-154979488 1.0000 20 chr17:73780743-73780763 1.0000 20 chr19:1905286-1905306 1.0000 20 chr21:15755557-15755577 1.0000 20 chr10:74870193-74870213 1.0000 20 chr16:58426755-58426775 1.0000 20 chr2:232646339-232646359 1.0000 20 chr2:172543929-172543949 1.0000 20 chr10:94050877-94050897 1.0000 20 chr19:55690539-55690559 1.0000 20 chr2:37193789-37193809 1.0000 20 chr10:38265621-38265641 1.0000 20 chr17:40075366-40075386 1.0000 20 chr7:150755123-150755143 1.0000 20 chr19:2457011-2457031 1.0000 20 chr1:243419258-243419278 1.0000 20 chr12:110151340-11015136 1.0000 20 chr19:37178397-37178417 1.0000 20 chr1:243418784-243418804 1.0000 20 chr3:183892474-183892494 1.0000 20 chr19:49250523-49250543 1.0000 20 chr19:49416560-49416580 1.0000 20 chr16:15150043-15150063 1.0000 20 chr19:49469227-49469247 1.0000 20 chr8:82755045-82755065 1.0000 20 chr22:41840499-41840519 1.0000 20 chr8:124253655-124253675 1.0000 20 chr1:155113027-155113047 1.0000 20 chr6:52929653-52929673 1.0000 20 chr9:134955301-134955321 1.0000 20 chr3:4344981-4345001 1.0000 20 chr9:102861377-102861397 1.0000 20 chr14:59655269-59655289 1.0000 20 chr19:19887309-19887329 1.0000 20 chr4:104021048-104021068 1.0000 20 chr17:19912596-19912616 1.0000 20 chr12:861551-861571 1.0000 20 chr5:85913673-85913693 1.0000 20 chr19:50836873-50836893 1.0000 20 chr1:17338481-17338501 1.0000 20 chr7:150924409-150924429 1.0000 20 chr16:31045674-31045694 1.0000 20 chr9:138853291-138853311 1.0000 20 chr17:7094972-7094992 1.0000 20 chr12:32832100-32832120 1.0000 20 chr19:55629145-55629165 1.0000 20 chr8:144699801-144699821 1.0000 20 chr16:53468308-53468328 1.0000 20 chr11:74109863-74109883 1.0000 20 chr6:31866324-31866344 1.0000 20 chr16:577617-577637 1.0000 20 chr15:75182341-75182361 1.0000 20 chr16:23160866-23160886 1.0000 20 chr8:99129463-99129483 1.0000 20 chr10:44144363-44144383 1.0000 20 chr14:68286424-68286444 1.0000 20 chr4:2420593-2420613 1.0000 20 chr19:37960191-37960211 1.0000 20 chr19:49947102-49947122 1.0000 20 chr21:35747767-35747787 1.0000 20 chr13:26827991-26828011 1.0000 20 chr7:140098341-140098361 1.0000 20 chr2:44001139-44001159 1.0000 20 chr13:52158013-52158033 1.0000 20 chr19:58071253-58071273 1.0000 20 chr15:64386182-64386202 1.0000 20 chr19:44507040-44507060 1.0000 20 chr3:46037339-46037359 1.0000 20 chr17:38083915-38083935 1.0000 20 chr10:38383195-38383215 1.0000 20 chr7:42971894-42971914 1.0000 20 chr1:151584422-151584442 1.0000 20 chr11:77899763-77899783 1.0000 20 chr6:15245662-15245682 1.0000 20 chr16:4321910-4321930 1.0000 20 chr16:686409-686429 1.0000 20 chr16:67840610-67840630 1.0000 20 chr17:40273401-40273421 1.0000 20 chr1:22110162-22110182 1.0000 20 chr5:173043783-173043803 1.0000 20 chr19:47354309-47354329 1.0000 20 chr11:450246-450266 1.0000 20 chr18:60382296-60382316 1.0000 20 chr9:34377193-34377213 1.0000 20 chr16:4664937-4664957 1.0000 20 chr6:31633725-31633745 1.0000 20 chr1:38412740-38412760 1.0000 20 chr19:44576243-44576263 1.0000 20 chr17:73937209-73937229 1.0000 20 chr14:81408158-81408178 1.0000 20 chr9:104161023-104161043 1.0000 20 chr5:55008192-55008212 1.0000 20 chr17:40950754-40950774 1.0000 20 chr19:55987876-55987896 1.0000 20 chr19:40315333-40315353 1.0000 20 chr7:100888077-100888097 1.0000 20 chr19:44617468-44617488 1.0000 20 chr14:82000495-82000515 1.0000 20 chr19:44598464-44598484 1.0000 20 chr20:47805073-47805093 1.0000 20 chr16:67700688-67700708 1.0000 20 chr18:71815716-71815736 1.0000 20 chr1:205744619-205744639 1.0000 20 chr12:13197294-13197314 1.0000 20 chr3:50397082-50397102 1.0000 20 chr20:23402175-23402195 1.0000 20 chr12:54582871-54582891 1.0000 20 chr2:136288435-136288455 1.0000 20 chr19:10828107-10828127 1.0000 20 chr20:18477881-18477901 1.0000 20 chr16:58718681-58718701 1.0000 20 chr19:59086727-59086747 1.0000 20 chr19:1241681-1241701 1.0000 20 chr7:150689979-150689999 1.0000 20 chr9:130965545-130965565 1.0000 20 chr1:3773983-3774003 1.0000 20 chr13:31736533-31736553 1.0000 20 chr3:32147932-32147952 1.0000 20 chr17:16439113-16439133 1.0000 20 chr7:111846554-111846574 1.0000 20 chr19:3761711-3761731 1.0000 20 chrX:107334908-107334928 1.0000 20 chr18:9475349-9475369 1.0000 20 chr5:138775231-138775251 1.0000 20 chr1:149871078-149871098 1.0000 20 chr17:17936935-17936955 1.0000 20 chr15:41099756-41099776 1.0000 20 chr19:4304565-4304585 1.0000 20 chr13:103451424-10345144 1.0000 20 chr19:36208474-36208494 1.0000 20 chr22:20748359-20748379 1.0000 20 chr15:79165133-79165153 1.0000 20 chr16:58664437-58664457 1.0000 20 chr1:54519149-54519169 1.0000 20 chr2:242089766-242089786 1.0000 20 chr19:49228277-49228297 1.0000 20 chr19:40949210-40949230 1.0000 20 chr21:35402554-35402574 1.0000 20 chrX:129116495-129116515 1.0000 20 chr13:30881240-30881260 1.0000 20 chr3:48282523-48282543 1.0000 20 chr20:33265003-33265023 1.0000 20 chr2:68694494-68694514 1.0000 20 chr19:10990006-10990026 1.0000 20 chr1:185126310-185126330 1.0000 20 chr9:7799836-7799856 1.0000 20 chr11:16760100-16760120 1.0000 20 chr10:99894352-99894372 1.0000 20 chr12:95611488-95611508 1.0000 20 chr14:96968660-96968680 1.0000 20 chr20:18774654-18774674 1.0000 20 chr6:41703417-41703437 1.0000 20 chr11:64015015-64015035 1.0000 20 chr2:75873880-75873900 1.0000 20 chr19:46366543-46366563 1.0000 20 chr19:35264172-35264192 1.0000 20 chr10:104262624-10426264 1.0000 20 chr1:115300184-115300204 1.0000 20 chr11:919227-919247 1.0000 20 chr5:157286185-157286205 1.0000 20 chr8:38326219-38326239 1.0000 20 chr20:25677538-25677558 1.0000 20 chr6:42531646-42531666 1.0000 20 chr19:49479624-49479644 1.0000 20 chr7:120590673-120590693 1.0000 20 chr2:242448126-242448146 1.0000 20 chr19:50163188-50163208 1.0000 20 chr8:145159823-145159843 1.0000 20 chr19:54606095-54606115 1.0000 20 chr19:44669175-44669195 1.0000 20 chr11:66138908-66138928 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_HCFC1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/HCFC1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.176 C 0.318 G 0.331 T 0.175 Background letter frequencies (from file dataset with add-one prior applied): A 0.176 C 0.318 G 0.331 T 0.175 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GRACTACA MEME-1 width = 8 sites = 20 llr = 198 E-value = 1.3e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRACTACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 36a::a:9 pos.-specific C :::a1:a1 probability G 75:::::: matrix T ::::a::1 bits 2.5 * * 2.3 * ** 2.0 * ** 1.8 ****** Relative 1.5 ****** Entropy 1.3 ****** (14.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GAACTACA consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRACTACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:73937209-73937229 9 5.62e-06 GCCATGAA GAACTACA GCTC chr16:4321910-4321930 4 5.62e-06 GGA GAACTACA GCTCCCGCG chr5:85913673-85913693 8 5.62e-06 ATGGTCT GAACTACA ATTCC chr11:64456070-64456090 13 5.62e-06 GCGCGACTGG GAACTACA chr11:60681344-60681364 11 5.62e-06 TGTAGCTCTA GAACTACA TG chr12:133532908-13353292 10 5.62e-06 CTCGCGCTG GAACTACA CTT chr7:120590673-120590693 13 8.61e-06 AGGAGGAAGA AAACTACA chr16:686409-686429 4 8.61e-06 GAT AAACTACA ACTCCCAGG chr1:147142705-147142725 11 8.61e-06 AGAGCTGCGG AAACTACA AC chr1:243418784-243418804 2 1.92e-05 A GGACTACA GTTCCCAGCG chr16:70473227-70473247 9 1.92e-05 CGCATCCA GGACTACA TCTC chr20:33735184-33735204 11 1.92e-05 TCTCACTTCC GGACTACA AG chr4:8160705-8160725 10 1.92e-05 GGGGCGATC GGACTACA AGT chr11:134123362-13412338 13 1.92e-05 GCTCGTGGGA GGACTACA chr1:224544483-224544503 8 1.92e-05 AAAATAT GGACTACA ACTCC chr19:19887309-19887329 6 2.48e-05 TAAAG AGACTACA ACTCCCA chr18:71815716-71815736 9 3.34e-05 AGGTTTTC AAACTACT ATTC chr7:150924409-150924429 8 4.39e-05 GCCTTGA GGACTACT ATGTA chr2:38893014-38893034 6 7.52e-05 CCCAA AAACTACC ATTCCCA chr3:4344981-4345001 2 1.29e-04 G GGACCACA AGTCCCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRACTACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:73937209-73937229 5.6e-06 8_[+1]_4 chr16:4321910-4321930 5.6e-06 3_[+1]_9 chr5:85913673-85913693 5.6e-06 7_[+1]_5 chr11:64456070-64456090 5.6e-06 12_[+1] chr11:60681344-60681364 5.6e-06 10_[+1]_2 chr12:133532908-13353292 5.6e-06 9_[+1]_3 chr7:120590673-120590693 8.6e-06 12_[+1] chr16:686409-686429 8.6e-06 3_[+1]_9 chr1:147142705-147142725 8.6e-06 10_[+1]_2 chr1:243418784-243418804 1.9e-05 1_[+1]_11 chr16:70473227-70473247 1.9e-05 8_[+1]_4 chr20:33735184-33735204 1.9e-05 10_[+1]_2 chr4:8160705-8160725 1.9e-05 9_[+1]_3 chr11:134123362-13412338 1.9e-05 12_[+1] chr1:224544483-224544503 1.9e-05 7_[+1]_5 chr19:19887309-19887329 2.5e-05 5_[+1]_7 chr18:71815716-71815736 3.3e-05 8_[+1]_4 chr7:150924409-150924429 4.4e-05 7_[+1]_5 chr2:38893014-38893034 7.5e-05 5_[+1]_7 chr3:4344981-4345001 0.00013 1_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRACTACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRACTACA width=8 seqs=20 chr17:73937209-73937229 ( 9) GAACTACA 1 chr16:4321910-4321930 ( 4) GAACTACA 1 chr5:85913673-85913693 ( 8) GAACTACA 1 chr11:64456070-64456090 ( 13) GAACTACA 1 chr11:60681344-60681364 ( 11) GAACTACA 1 chr12:133532908-13353292 ( 10) GAACTACA 1 chr7:120590673-120590693 ( 13) AAACTACA 1 chr16:686409-686429 ( 4) AAACTACA 1 chr1:147142705-147142725 ( 11) AAACTACA 1 chr1:243418784-243418804 ( 2) GGACTACA 1 chr16:70473227-70473247 ( 9) GGACTACA 1 chr20:33735184-33735204 ( 11) GGACTACA 1 chr4:8160705-8160725 ( 10) GGACTACA 1 chr11:134123362-13412338 ( 13) GGACTACA 1 chr1:224544483-224544503 ( 8) GGACTACA 1 chr19:19887309-19887329 ( 6) AGACTACA 1 chr18:71815716-71815736 ( 9) AAACTACT 1 chr7:150924409-150924429 ( 8) GGACTACT 1 chr2:38893014-38893034 ( 6) AAACTACC 1 chr3:4344981-4345001 ( 2) GGACCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRACTACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.58836 E= 1.3e-020 77 -1097 108 -1097 164 -1097 44 -1097 250 -1097 -1097 -1097 -1097 165 -1097 -1097 -1097 -266 -1097 244 250 -1097 -1097 -1097 -1097 165 -1097 -1097 227 -266 -1097 -80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRACTACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.3e-020 0.300000 0.000000 0.700000 0.000000 0.550000 0.000000 0.450000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.050000 0.000000 0.950000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.850000 0.050000 0.000000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRACTACA MEME-1 regular expression -------------------------------------------------------------------------------- [GA][AG]ACTACA -------------------------------------------------------------------------------- Time 3.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTAGTYC MEME-2 width = 8 sites = 21 llr = 196 E-value = 2.0e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTAGTYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C ::::::47 probability G 1a1:a::: matrix T 9:9::963 bits 2.5 * 2.3 * 2.0 ** 1.8 * ** * Relative 1.5 ****** Entropy 1.3 ******* (13.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGTAGTTC consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:111846554-111846574 2 5.75e-06 T TGTAGTTC TTGGCCTCCC chr19:44576243-44576263 11 5.75e-06 TTCTGGGAAA TGTAGTTC AC chr7:42971894-42971914 1 5.75e-06 . TGTAGTTC TAAGAAGCGA chr11:74109863-74109883 6 5.75e-06 GGAGT TGTAGTTC TTTCCTT chr14:65569308-65569328 11 5.75e-06 AGCCGAGACT TGTAGTTC TT chr19:42463562-42463582 7 5.75e-06 GGGGAC TGTAGTTC TGCCGC chr19:10828107-10828127 5 8.92e-06 GACT TGTAGTTT TCCCCAGT chr17:38083915-38083935 5 8.92e-06 GAGT TGTAGTTT CTTCCGCT chr8:99129463-99129483 6 8.92e-06 GGAAC TGTAGTTT CGGCGAC chr13:31736533-31736553 13 1.94e-05 TGCTGGGATG TGTAGTCC chr19:44617468-44617488 12 1.94e-05 TTCTGGGAAG TGTAGTCC A chr16:15150043-15150063 1 1.94e-05 . TGTAGTCC AAAGCCAGGA chr19:37178397-37178417 1 1.94e-05 . TGTAGTCC AAGGCCGGAA chr20:48732507-48732527 11 2.51e-05 TGCTGGTTGT TGTAGTCT AG chr6:31633725-31633745 13 3.60e-05 TCCTGGGATT GGTAGTTC chr6:41703417-41703437 9 6.93e-05 CTGGGAAG CGTAGTTC TCGC chr11:60681344-60681364 1 9.06e-05 . TGTAGCTC TAGAACTACA chr20:18774654-18774674 4 1.08e-04 gcc tgtaggtt tccggggtt chr19:36208474-36208494 5 1.28e-04 GAGT GGTAGTCC ACGCGGGC chr8:144699801-144699821 4 1.48e-04 ACT TGGAGTCC GCGGCCGCA chr22:20748359-20748379 5 1.69e-04 GAAA TGGAGTCT GACGCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:111846554-111846574 5.8e-06 1_[+2]_11 chr19:44576243-44576263 5.8e-06 10_[+2]_2 chr7:42971894-42971914 5.8e-06 [+2]_12 chr11:74109863-74109883 5.8e-06 5_[+2]_7 chr14:65569308-65569328 5.8e-06 10_[+2]_2 chr19:42463562-42463582 5.8e-06 6_[+2]_6 chr19:10828107-10828127 8.9e-06 4_[+2]_8 chr17:38083915-38083935 8.9e-06 4_[+2]_8 chr8:99129463-99129483 8.9e-06 5_[+2]_7 chr13:31736533-31736553 1.9e-05 12_[+2] chr19:44617468-44617488 1.9e-05 11_[+2]_1 chr16:15150043-15150063 1.9e-05 [+2]_12 chr19:37178397-37178417 1.9e-05 [+2]_12 chr20:48732507-48732527 2.5e-05 10_[+2]_2 chr6:31633725-31633745 3.6e-05 12_[+2] chr6:41703417-41703437 6.9e-05 8_[+2]_4 chr11:60681344-60681364 9.1e-05 [+2]_12 chr20:18774654-18774674 0.00011 3_[+2]_9 chr19:36208474-36208494 0.00013 4_[+2]_8 chr8:144699801-144699821 0.00015 3_[+2]_9 chr22:20748359-20748379 0.00017 4_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTAGTYC width=8 seqs=21 chr7:111846554-111846574 ( 2) TGTAGTTC 1 chr19:44576243-44576263 ( 11) TGTAGTTC 1 chr7:42971894-42971914 ( 1) TGTAGTTC 1 chr11:74109863-74109883 ( 6) TGTAGTTC 1 chr14:65569308-65569328 ( 11) TGTAGTTC 1 chr19:42463562-42463582 ( 7) TGTAGTTC 1 chr19:10828107-10828127 ( 5) TGTAGTTT 1 chr17:38083915-38083935 ( 5) TGTAGTTT 1 chr8:99129463-99129483 ( 6) TGTAGTTT 1 chr13:31736533-31736553 ( 13) TGTAGTCC 1 chr19:44617468-44617488 ( 12) TGTAGTCC 1 chr16:15150043-15150063 ( 1) TGTAGTCC 1 chr19:37178397-37178417 ( 1) TGTAGTCC 1 chr20:48732507-48732527 ( 11) TGTAGTCT 1 chr6:31633725-31633745 ( 13) GGTAGTTC 1 chr6:41703417-41703437 ( 9) CGTAGTTC 1 chr11:60681344-60681364 ( 1) TGTAGCTC 1 chr20:18774654-18774674 ( 4) TGTAGGTT 1 chr19:36208474-36208494 ( 5) GGTAGTCC 1 chr8:144699801-144699821 ( 4) TGGAGTCC 1 chr22:20748359-20748379 ( 5) TGGAGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.57119 E= 2.0e-017 -1104 -274 -180 229 -1104 -1104 159 -1104 -1104 -1104 -180 237 250 -1104 -1104 -1104 -1104 -1104 159 -1104 -1104 -274 -279 237 -1104 26 -1104 183 -1104 117 -1104 71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.0e-017 0.000000 0.047619 0.095238 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.095238 0.904762 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.047619 0.047619 0.904762 0.000000 0.380952 0.000000 0.619048 0.000000 0.714286 0.000000 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTYC MEME-2 regular expression -------------------------------------------------------------------------------- TGTAGT[TC][CT] -------------------------------------------------------------------------------- Time 3.91 secs. ******************************************************************************** ******************************************************************************** MOTIF TBCTGGGA MEME-3 width = 8 sites = 18 llr = 153 E-value = 1.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::1:::a pos.-specific C 33a::::: probability G :4::aaa: matrix T 63:9:::: bits 2.5 * 2.3 * 2.0 * * 1.8 ** * Relative 1.5 ****** Entropy 1.3 ****** (12.3 bits) 1.0 * ****** 0.8 * ****** 0.5 * ****** 0.3 ******** 0.0 -------- Multilevel TGCTGGGA consensus CT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:44617468-44617488 2 1.09e-05 A TTCTGGGA AGTGTAGTCC chr19:44576243-44576263 1 1.09e-05 . TTCTGGGA AATGTAGTTC chr6:31866324-31866344 11 1.09e-05 ATTAAAGGCC TTCTGGGA AC chr10:74870193-74870213 4 1.09e-05 GGA TTCTGGGA AGTGTGGCA chr19:10990006-10990026 9 3.15e-05 gcaaggga tgctggga aatg chr19:3761711-3761731 4 3.15e-05 GCC TGCTGGGA AATGTAGTT chr13:31736533-31736553 3 3.15e-05 CA TGCTGGGA TGTGTAGTCC chr9:34377193-34377213 5 3.15e-05 GGCC TGCTGGGA CATGTAGT chr6:31633725-31633745 3 5.12e-05 CA TCCTGGGA TTGGTAGTTC chr9:134955301-134955321 12 7.10e-05 CTCCGAAGAC CTCTGGGA A chr8:124253655-124253675 9 1.19e-04 GCGCGGCA CGCTGGGA CTTG chr19:54606095-54606115 7 1.66e-04 GCGCAG CCCTGGGA GCGGGT chr10:104262624-10426264 10 1.66e-04 TGCGCAGTA CCCTGGGA TTT chr7:93633706-93633726 13 1.66e-04 CTCATTGGAG CCCTGGGA chr19:48907043-48907063 12 1.66e-04 CCTCACTGCC TTCAGGGA A chr21:35402554-35402574 11 1.87e-04 cagcaaggga agctggga aa chr19:52097779-52097799 13 2.07e-04 ACGCAGGGGC ACCTGGGA chr1:244816083-244816103 12 2.27e-04 CCCCGCGGCA TGCAGGGA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:44617468-44617488 1.1e-05 1_[+3]_11 chr19:44576243-44576263 1.1e-05 [+3]_12 chr6:31866324-31866344 1.1e-05 10_[+3]_2 chr10:74870193-74870213 1.1e-05 3_[+3]_9 chr19:10990006-10990026 3.1e-05 8_[+3]_4 chr19:3761711-3761731 3.1e-05 3_[+3]_9 chr13:31736533-31736553 3.1e-05 2_[+3]_10 chr9:34377193-34377213 3.1e-05 4_[+3]_8 chr6:31633725-31633745 5.1e-05 2_[+3]_10 chr9:134955301-134955321 7.1e-05 11_[+3]_1 chr8:124253655-124253675 0.00012 8_[+3]_4 chr19:54606095-54606115 0.00017 6_[+3]_6 chr10:104262624-10426264 0.00017 9_[+3]_3 chr7:93633706-93633726 0.00017 12_[+3] chr19:48907043-48907063 0.00017 11_[+3]_1 chr21:35402554-35402574 0.00019 10_[+3]_2 chr19:52097779-52097799 0.00021 12_[+3] chr1:244816083-244816103 0.00023 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TBCTGGGA width=8 seqs=18 chr19:44617468-44617488 ( 2) TTCTGGGA 1 chr19:44576243-44576263 ( 1) TTCTGGGA 1 chr6:31866324-31866344 ( 11) TTCTGGGA 1 chr10:74870193-74870213 ( 4) TTCTGGGA 1 chr19:10990006-10990026 ( 9) TGCTGGGA 1 chr19:3761711-3761731 ( 4) TGCTGGGA 1 chr13:31736533-31736553 ( 3) TGCTGGGA 1 chr9:34377193-34377213 ( 5) TGCTGGGA 1 chr6:31633725-31633745 ( 3) TCCTGGGA 1 chr9:134955301-134955321 ( 12) CTCTGGGA 1 chr8:124253655-124253675 ( 9) CGCTGGGA 1 chr19:54606095-54606115 ( 7) CCCTGGGA 1 chr10:104262624-10426264 ( 10) CCCTGGGA 1 chr7:93633706-93633726 ( 13) CCCTGGGA 1 chr19:48907043-48907063 ( 12) TTCAGGGA 1 chr21:35402554-35402574 ( 11) AGCTGGGA 1 chr19:52097779-52097799 ( 13) ACCTGGGA 1 chr1:244816083-244816103 ( 12) TGCAGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.89767 E= 1.2e-005 -67 -19 -1081 181 -1081 -19 23 93 -1081 165 -1081 -1081 -67 -1081 -1081 235 -1081 -1081 159 -1081 -1081 -1081 159 -1081 -1081 -1081 159 -1081 250 -1081 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.2e-005 0.111111 0.277778 0.000000 0.611111 0.000000 0.277778 0.388889 0.333333 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBCTGGGA MEME-3 regular expression -------------------------------------------------------------------------------- [TC][GTC]CTGGGA -------------------------------------------------------------------------------- Time 4.84 secs. ******************************************************************************** ******************************************************************************** MOTIF ADGTTAAG MEME-4 width = 8 sites = 4 llr = 41 E-value = 3.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ADGTTAAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 85:::a8: pos.-specific C :::::::: probability G :3a::::a matrix T 33:aa:3: bits 2.5 *** 2.3 *** 2.0 *** 1.8 * **** Relative 1.5 * ****** Entropy 1.3 * ****** (14.9 bits) 1.0 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAGTTAAG consensus TG T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADGTTAAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:46134712-46134732 8 3.22e-06 TAATCTG AAGTTAAG CAAAA chr19:46027195-46027215 1 6.42e-06 . ATGTTAAG CACCCTTATA chr2:136288435-136288455 13 1.28e-05 AACGGAGGAG AAGTTATG chr19:49248641-49248661 8 4.05e-05 ATAGGCC TGGTTAAG GACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADGTTAAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:46134712-46134732 3.2e-06 7_[+4]_5 chr19:46027195-46027215 6.4e-06 [+4]_12 chr2:136288435-136288455 1.3e-05 12_[+4] chr19:49248641-49248661 4e-05 7_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADGTTAAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ADGTTAAG width=8 seqs=4 chr11:46134712-46134732 ( 8) AAGTTAAG 1 chr19:46027195-46027215 ( 1) ATGTTAAG 1 chr2:136288435-136288455 ( 13) AAGTTATG 1 chr19:49248641-49248661 ( 8) TGGTTAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADGTTAAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 3.8e+003 209 -865 -865 52 150 -865 -40 52 -865 -865 159 -865 -865 -865 -865 251 -865 -865 -865 251 250 -865 -865 -865 209 -865 -865 52 -865 -865 159 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADGTTAAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.8e+003 0.750000 0.000000 0.000000 0.250000 0.500000 0.000000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ADGTTAAG MEME-4 regular expression -------------------------------------------------------------------------------- [AT][AGT]GTTA[AT]G -------------------------------------------------------------------------------- Time 5.61 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCAGCA MEME-5 width = 8 sites = 10 llr = 85 E-value = 4.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCAGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:::7:28 pos.-specific C :aaa::7: probability G ::::3a12 matrix T 9::::::: bits 2.5 2.3 2.0 * 1.8 **** Relative 1.5 **** * * Entropy 1.3 ****** * (12.2 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCCCAGCA consensus G AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:115300184-115300204 10 1.83e-05 GACTACAGA TCCCAGCA GCC chr3:4344981-4345001 12 1.83e-05 GGACCACAAG TCCCAGCA T chr10:38265621-38265641 3 2.85e-05 CT TCCCAGAA GGCCCGGCTG chr10:111985633-11198565 6 6.30e-05 ACGAT TCCCGGCA GCCGCGG chr19:38397776-38397796 13 6.30e-05 CGCCTACGGC TCCCGGCA chr3:50397082-50397102 6 8.21e-05 ACAAG TCCCAGGA GGCCATG chr1:243418784-243418804 12 1.17e-04 GGACTACAGT TCCCAGCG G chr2:232646339-232646359 6 1.17e-04 ACAGA TCCCAGCG CACCACA chr12:54582871-54582891 10 1.36e-04 ATGCTCCAA TCCCGGAA GGC chr20:25677538-25677558 3 1.54e-04 CT ACCCAGCA TCCTCGGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:115300184-115300204 1.8e-05 9_[+5]_3 chr3:4344981-4345001 1.8e-05 11_[+5]_1 chr10:38265621-38265641 2.9e-05 2_[+5]_10 chr10:111985633-11198565 6.3e-05 5_[+5]_7 chr19:38397776-38397796 6.3e-05 12_[+5] chr3:50397082-50397102 8.2e-05 5_[+5]_7 chr1:243418784-243418804 0.00012 11_[+5]_1 chr2:232646339-232646359 0.00012 5_[+5]_7 chr12:54582871-54582891 0.00014 9_[+5]_3 chr20:25677538-25677558 0.00015 2_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCAGCA width=8 seqs=10 chr1:115300184-115300204 ( 10) TCCCAGCA 1 chr3:4344981-4345001 ( 12) TCCCAGCA 1 chr10:38265621-38265641 ( 3) TCCCAGAA 1 chr10:111985633-11198565 ( 6) TCCCGGCA 1 chr19:38397776-38397796 ( 13) TCCCGGCA 1 chr3:50397082-50397102 ( 6) TCCCAGGA 1 chr1:243418784-243418804 ( 12) TCCCAGCG 1 chr2:232646339-232646359 ( 6) TCCCAGCG 1 chr12:54582871-54582891 ( 10) TCCCGGAA 1 chr20:25677538-25677558 ( 3) ACCCAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 4.1e+003 -82 -997 -997 236 -997 165 -997 -997 -997 165 -997 -997 -997 165 -997 -997 199 -997 -14 -997 -997 -997 159 -997 18 114 -172 -997 218 -997 -73 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.1e+003 0.100000 0.000000 0.000000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.700000 0.100000 0.000000 0.800000 0.000000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGCA MEME-5 regular expression -------------------------------------------------------------------------------- TCCC[AG]G[CA][AG] -------------------------------------------------------------------------------- Time 6.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:7118445-7118465 3.24e-01 20 chr19:48866459-48866479 5.79e-01 20 chr17:40559695-40559715 2.91e-01 20 chr19:49013961-49013981 6.03e-01 20 chr19:48907043-48907063 5.74e-02 20 chr16:30908497-30908517 8.34e-01 20 chr19:49148218-49148238 7.61e-01 20 chr12:133532908-13353292 1.05e-03 9_[+1(5.62e-06)]_3 chr16:30103291-30103311 8.59e-01 20 chr19:49310060-49310080 4.67e-01 20 chr19:48833462-48833482 6.90e-01 20 chr19:52097779-52097799 3.36e-02 20 chr6:43215054-43215074 3.63e-01 20 chr19:45988741-45988761 9.57e-01 20 chr3:14166399-14166419 8.70e-02 20 chr19:49362040-49362060 2.18e-01 20 chr9:97021518-97021538 1.49e-01 20 chr19:38397776-38397796 2.59e-02 12_[+5(6.30e-05)] chr1:6673662-6673682 5.69e-01 20 chr5:178157748-178157768 5.24e-01 20 chr4:18023818-18023838 2.96e-01 20 chr19:55817026-55817046 5.82e-01 20 chr1:224544483-224544503 3.88e-03 7_[+1(1.92e-05)]_5 chr19:42463562-42463582 1.50e-04 6_[+2(5.75e-06)]_6 chr19:49248641-49248661 5.98e-02 7_[+4(4.05e-05)]_5 chr19:54682402-54682422 3.98e-02 20 chr19:44809231-44809251 2.22e-01 20 chr6:11093967-11093987 2.44e-01 20 chr11:134123362-13412338 5.30e-04 12_[+1(1.92e-05)] chr15:63481600-63481620 3.05e-01 20 chr19:49224392-49224412 3.12e-02 20 chr5:178286916-178286936 4.56e-01 20 chr19:507928-507948 4.01e-01 20 chr17:7358846-7358866 7.29e-02 20 chr4:8160705-8160725 1.31e-02 9_[+1(1.92e-05)]_3 chr9:131965211-131965231 7.76e-01 20 chr4:2538162-2538182 2.25e-01 20 chr19:48922703-48922723 1.74e-01 20 chr10:111985633-11198565 2.97e-02 5_[+5(6.30e-05)]_7 chr6:5003936-5003956 1.39e-01 20 chr18:9913611-9913631 3.53e-01 20 chr19:45908773-45908793 6.28e-01 20 chr17:76250671-76250691 6.01e-01 20 chr2:54950563-54950583 9.87e-01 20 chr7:93633706-93633726 3.05e-03 20 chr3:183735780-183735800 3.18e-01 20 chr21:35288176-35288196 6.94e-01 20 chr20:62694403-62694423 4.89e-01 20 chr19:57946580-57946600 6.94e-01 20 chr20:33735184-33735204 1.17e-02 10_[+1(1.92e-05)]_2 chr16:46918170-46918190 8.76e-01 20 chr17:4634621-4634641 5.40e-01 20 chr1:2457702-2457722 8.55e-01 20 chr10:92631683-92631703 7.16e-01 20 chr16:70473227-70473247 4.97e-03 8_[+1(1.92e-05)]_4 chr6:157801115-157801135 4.15e-01 20 chr2:86332712-86332732 1.44e-01 20 chr1:247095541-247095561 6.30e-01 20 chr14:65569308-65569328 5.45e-04 10_[+2(5.75e-06)]_2 chr20:48732507-48732527 4.44e-03 10_[+2(2.51e-05)]_2 chr2:170430445-170430465 6.50e-01 20 chr6:43597119-43597139 6.47e-01 20 chr11:114310091-11431011 7.66e-01 20 chr19:50651569-50651589 3.53e-01 20 chr1:47799931-47799951 8.11e-01 20 chr1:1051583-1051603 9.66e-01 20 chr19:46027195-46027215 1.25e-02 [+4(6.42e-06)]_12 chr1:244816083-244816103 7.98e-02 20 chr11:60681344-60681364 2.53e-05 [+2(9.06e-05)]_2_[+1(5.62e-06)]_2 chr12:56710164-56710184 3.84e-01 20 chr11:64456070-64456090 2.72e-03 12_[+1(5.62e-06)] chr1:147142705-147142725 1.06e-02 10_[+1(8.61e-06)]_2 chr8:124054132-124054152 2.17e-01 20 chr11:46134712-46134732 3.02e-03 7_[+4(3.22e-06)]_5 chr10:43048374-43048394 9.41e-01 20 chr2:38893014-38893034 1.01e-01 5_[+1(7.52e-05)]_7 chr16:68482643-68482663 8.09e-01 20 chr12:122985582-12298560 7.93e-01 20 chr3:126423008-126423028 3.01e-02 20 chr1:154979468-154979488 3.65e-01 20 chr17:73780743-73780763 3.05e-02 20 chr19:1905286-1905306 7.86e-01 20 chr21:15755557-15755577 1.25e-01 20 chr10:74870193-74870213 3.39e-03 3_[+3(1.09e-05)]_9 chr16:58426755-58426775 5.14e-01 20 chr2:232646339-232646359 1.00e-02 20 chr2:172543929-172543949 6.03e-01 20 chr10:94050877-94050897 4.87e-01 20 chr19:55690539-55690559 5.60e-01 20 chr2:37193789-37193809 3.76e-01 20 chr10:38265621-38265641 2.65e-02 2_[+5(2.85e-05)]_10 chr17:40075366-40075386 4.82e-01 20 chr7:150755123-150755143 9.79e-01 20 chr19:2457011-2457031 6.65e-01 20 chr1:243419258-243419278 2.18e-01 20 chr12:110151340-11015136 6.63e-01 20 chr19:37178397-37178417 5.01e-03 [+2(1.94e-05)]_12 chr1:243418784-243418804 9.89e-05 1_[+1(1.92e-05)]_11 chr3:183892474-183892494 6.22e-01 20 chr19:49250523-49250543 4.01e-01 20 chr19:49416560-49416580 3.76e-01 20 chr16:15150043-15150063 9.00e-04 [+2(1.94e-05)]_12 chr19:49469227-49469247 4.94e-01 20 chr8:82755045-82755065 6.08e-01 20 chr22:41840499-41840519 5.54e-01 20 chr8:124253655-124253675 4.08e-02 20 chr1:155113027-155113047 8.66e-01 20 chr6:52929653-52929673 6.09e-01 20 chr9:134955301-134955321 3.96e-03 11_[+3(7.10e-05)]_1 chr3:4344981-4345001 3.68e-04 11_[+5(1.83e-05)]_1 chr9:102861377-102861397 7.03e-01 20 chr14:59655269-59655289 8.48e-01 20 chr19:19887309-19887329 5.34e-02 5_[+1(2.48e-05)]_7 chr4:104021048-104021068 5.85e-01 20 chr17:19912596-19912616 9.36e-01 20 chr12:861551-861571 5.05e-01 20 chr5:85913673-85913693 3.59e-03 7_[+1(5.62e-06)]_5 chr19:50836873-50836893 4.63e-01 20 chr1:17338481-17338501 7.49e-01 20 chr7:150924409-150924429 3.67e-02 7_[+1(4.39e-05)]_5 chr16:31045674-31045694 4.43e-02 20 chr9:138853291-138853311 5.31e-01 20 chr17:7094972-7094992 1.04e-01 20 chr12:32832100-32832120 8.74e-01 20 chr19:55629145-55629165 9.34e-02 20 chr8:144699801-144699821 7.68e-02 20 chr16:53468308-53468328 8.20e-01 20 chr11:74109863-74109883 5.16e-03 5_[+2(5.75e-06)]_7 chr6:31866324-31866344 3.04e-03 10_[+3(1.09e-05)]_2 chr16:577617-577637 4.75e-01 20 chr15:75182341-75182361 3.66e-01 20 chr16:23160866-23160886 9.42e-01 20 chr8:99129463-99129483 9.52e-05 5_[+2(8.92e-06)]_7 chr10:44144363-44144383 2.05e-01 20 chr14:68286424-68286444 3.35e-01 20 chr4:2420593-2420613 5.05e-01 20 chr19:37960191-37960211 1.16e-01 20 chr19:49947102-49947122 7.54e-01 20 chr21:35747767-35747787 3.05e-01 20 chr13:26827991-26828011 9.84e-01 20 chr7:140098341-140098361 5.63e-01 20 chr2:44001139-44001159 9.62e-01 20 chr13:52158013-52158033 3.81e-01 20 chr19:58071253-58071273 6.34e-01 20 chr15:64386182-64386202 7.39e-01 20 chr19:44507040-44507060 1.23e-01 20 chr3:46037339-46037359 4.56e-01 20 chr17:38083915-38083935 2.12e-02 4_[+2(8.92e-06)]_8 chr10:38383195-38383215 9.81e-01 20 chr7:42971894-42971914 2.16e-04 [+2(5.75e-06)]_12 chr1:151584422-151584442 3.31e-01 20 chr11:77899763-77899783 3.57e-01 20 chr6:15245662-15245682 9.94e-02 20 chr16:4321910-4321930 5.32e-03 3_[+1(5.62e-06)]_9 chr16:686409-686429 2.92e-02 3_[+1(8.61e-06)]_9 chr16:67840610-67840630 3.05e-01 20 chr17:40273401-40273421 6.39e-01 20 chr1:22110162-22110182 3.81e-01 20 chr5:173043783-173043803 8.68e-01 20 chr19:47354309-47354329 4.41e-02 20 chr11:450246-450266 4.70e-01 20 chr18:60382296-60382316 5.25e-01 20 chr9:34377193-34377213 1.22e-02 4_[+3(3.15e-05)]_8 chr16:4664937-4664957 6.76e-01 20 chr6:31633725-31633745 2.81e-05 2_[+3(5.12e-05)]_2_[+2(3.60e-05)] chr1:38412740-38412760 3.24e-01 20 chr19:44576243-44576263 7.57e-07 [+3(1.09e-05)]_2_[+2(5.75e-06)]_2 chr17:73937209-73937229 4.08e-03 8_[+1(5.62e-06)]_4 chr14:81408158-81408178 1.59e-02 20 chr9:104161023-104161043 3.55e-01 20 chr5:55008192-55008212 9.82e-01 20 chr17:40950754-40950774 8.91e-01 20 chr19:55987876-55987896 9.48e-01 20 chr19:40315333-40315353 5.47e-01 20 chr7:100888077-100888097 1.79e-01 20 chr19:44617468-44617488 1.42e-06 1_[+3(1.09e-05)]_2_[+2(1.94e-05)]_1 chr14:82000495-82000515 1.57e-01 20 chr19:44598464-44598484 6.50e-02 20 chr20:47805073-47805093 8.72e-01 20 chr16:67700688-67700708 7.03e-01 20 chr18:71815716-71815736 2.47e-02 8_[+1(3.34e-05)]_4 chr1:205744619-205744639 3.97e-01 20 chr12:13197294-13197314 9.88e-01 20 chr3:50397082-50397102 2.69e-03 5_[+5(8.21e-05)]_7 chr20:23402175-23402195 3.00e-01 20 chr12:54582871-54582891 3.87e-02 20 chr2:136288435-136288455 7.92e-03 12_[+4(1.28e-05)] chr19:10828107-10828127 7.74e-03 4_[+2(8.92e-06)]_8 chr20:18477881-18477901 8.65e-01 20 chr16:58718681-58718701 6.76e-01 20 chr19:59086727-59086747 1.23e-02 20 chr19:1241681-1241701 9.93e-01 20 chr7:150689979-150689999 1.34e-01 20 chr9:130965545-130965565 8.10e-01 20 chr1:3773983-3774003 9.17e-01 20 chr13:31736533-31736553 1.51e-05 2_[+3(3.15e-05)]_2_[+2(1.94e-05)] chr3:32147932-32147952 8.16e-01 20 chr17:16439113-16439133 6.68e-02 20 chr7:111846554-111846574 4.58e-04 1_[+2(5.75e-06)]_11 chr19:3761711-3761731 1.00e-02 3_[+3(3.15e-05)]_9 chrX:107334908-107334928 2.34e-02 20 chr18:9475349-9475369 5.34e-01 20 chr5:138775231-138775251 7.11e-01 20 chr1:149871078-149871098 6.52e-01 20 chr17:17936935-17936955 1.66e-01 20 chr15:41099756-41099776 6.60e-02 20 chr19:4304565-4304585 4.83e-01 20 chr13:103451424-10345144 9.68e-01 20 chr19:36208474-36208494 2.45e-02 20 chr22:20748359-20748379 6.31e-02 20 chr15:79165133-79165153 9.89e-01 20 chr16:58664437-58664457 7.20e-01 20 chr1:54519149-54519169 5.79e-01 20 chr2:242089766-242089786 3.36e-01 20 chr19:49228277-49228297 5.77e-01 20 chr19:40949210-40949230 3.14e-01 20 chr21:35402554-35402574 9.20e-03 20 chrX:129116495-129116515 8.80e-01 20 chr13:30881240-30881260 6.23e-01 20 chr3:48282523-48282543 8.65e-01 20 chr20:33265003-33265023 5.14e-01 20 chr2:68694494-68694514 6.83e-02 20 chr19:10990006-10990026 2.82e-03 8_[+3(3.15e-05)]_4 chr1:185126310-185126330 7.87e-01 20 chr9:7799836-7799856 5.33e-01 20 chr11:16760100-16760120 4.39e-01 20 chr10:99894352-99894372 4.96e-01 20 chr12:95611488-95611508 9.66e-01 20 chr14:96968660-96968680 8.32e-01 20 chr20:18774654-18774674 6.79e-03 20 chr6:41703417-41703437 2.86e-02 8_[+2(6.93e-05)]_4 chr11:64015015-64015035 1.21e-01 20 chr2:75873880-75873900 8.32e-01 20 chr19:46366543-46366563 1.67e-01 20 chr19:35264172-35264192 8.35e-01 20 chr10:104262624-10426264 1.09e-02 20 chr1:115300184-115300204 1.52e-02 9_[+5(1.83e-05)]_3 chr11:919227-919247 9.55e-02 20 chr5:157286185-157286205 6.20e-01 20 chr8:38326219-38326239 2.20e-01 20 chr20:25677538-25677558 6.27e-02 20 chr6:42531646-42531666 2.87e-01 20 chr19:49479624-49479644 2.45e-01 20 chr7:120590673-120590693 8.25e-03 12_[+1(8.61e-06)] chr2:242448126-242448146 9.83e-01 20 chr19:50163188-50163208 1.36e-02 20 chr8:145159823-145159843 9.57e-01 20 chr19:54606095-54606115 4.80e-02 20 chr19:44669175-44669195 4.43e-01 20 chr11:66138908-66138928 2.45e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************