******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/GATAD2B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:156681270-156681290 1.0000 20 chr7:156012934-156012954 1.0000 20 chr9:140210754-140210774 1.0000 20 chr9:127384448-127384468 1.0000 20 chr11:64405664-64405684 1.0000 20 chr7:5581418-5581438 1.0000 20 chr14:74079435-74079455 1.0000 20 chr1:2158977-2158997 1.0000 20 chr6:163834580-163834600 1.0000 20 chr19:1180562-1180582 1.0000 20 chrX:19881722-19881742 1.0000 20 chr10:71867323-71867343 1.0000 20 chr10:86088635-86088655 1.0000 20 chr22:42345667-42345687 1.0000 20 chr10:127511653-12751167 1.0000 20 chr12:122906874-12290689 1.0000 20 chr2:191208445-191208465 1.0000 20 chr4:186125114-186125134 1.0000 20 chr7:26437937-26437957 1.0000 20 chr4:156588801-156588821 1.0000 20 chr18:6414789-6414809 1.0000 20 chr13:61821953-61821973 1.0000 20 chr17:80260097-80260117 1.0000 20 chr20:8000191-8000211 1.0000 20 chr3:52058011-52058031 1.0000 20 chr16:84681850-84681870 1.0000 20 chr20:62711066-62711086 1.0000 20 chr1:31950362-31950382 1.0000 20 chr17:27224586-27224606 1.0000 20 chr4:1341215-1341235 1.0000 20 chr2:65165217-65165237 1.0000 20 chr14:50550569-50550589 1.0000 20 chr16:58137075-58137095 1.0000 20 chr9:126793439-126793459 1.0000 20 chr19:38894025-38894045 1.0000 20 chrX:148280977-148280997 1.0000 20 chr14:61906283-61906303 1.0000 20 chr8:29952911-29952931 1.0000 20 chr3:171515317-171515337 1.0000 20 chr1:211870846-211870866 1.0000 20 chr16:88851925-88851945 1.0000 20 chr10:52384840-52384860 1.0000 20 chr1:167522874-167522894 1.0000 20 chr17:79480153-79480173 1.0000 20 chr11:125243823-12524384 1.0000 20 chr6:126111922-126111942 1.0000 20 chr9:88861878-88861898 1.0000 20 chr3:98332034-98332054 1.0000 20 chr7:55154397-55154417 1.0000 20 chr10:88471215-88471235 1.0000 20 chr3:178764526-178764546 1.0000 20 chr3:196189971-196189991 1.0000 20 chr2:136742928-136742948 1.0000 20 chr3:122283298-122283318 1.0000 20 chr12:46777661-46777681 1.0000 20 chr10:64287264-64287284 1.0000 20 chr17:71278260-71278280 1.0000 20 chr16:84927536-84927556 1.0000 20 chr3:9957146-9957166 1.0000 20 chr4:39046713-39046733 1.0000 20 chr17:1391546-1391566 1.0000 20 chr17:16311559-16311579 1.0000 20 chr21:45284285-45284305 1.0000 20 chr1:154974271-154974291 1.0000 20 chr1:178995529-178995549 1.0000 20 chr3:47204988-47205008 1.0000 20 chr7:128579606-128579626 1.0000 20 chr1:1093472-1093492 1.0000 20 chr16:28519475-28519495 1.0000 20 chr13:114145196-11414521 1.0000 20 chr11:67169088-67169108 1.0000 20 chr19:2052375-2052395 1.0000 20 chr9:131464965-131464985 1.0000 20 chr19:18768692-18768712 1.0000 20 chr6:109415926-109415946 1.0000 20 chr19:10341163-10341183 1.0000 20 chr21:45627087-45627107 1.0000 20 chr8:11142178-11142198 1.0000 20 chr22:37596680-37596700 1.0000 20 chr19:14202117-14202137 1.0000 20 chr16:29937355-29937375 1.0000 20 chr5:7794574-7794594 1.0000 20 chr12:44229886-44229906 1.0000 20 chr18:46478135-46478155 1.0000 20 chr22:50765712-50765732 1.0000 20 chr1:31192044-31192064 1.0000 20 chr5:133406984-133407004 1.0000 20 chr4:184644227-184644247 1.0000 20 chr17:78234073-78234093 1.0000 20 chr1:151810959-151810979 1.0000 20 chr1:184943257-184943277 1.0000 20 chr12:113527428-11352744 1.0000 20 chr20:10655085-10655105 1.0000 20 chr14:74058803-74058823 1.0000 20 chr15:38915240-38915260 1.0000 20 chr6:15245089-15245109 1.0000 20 chr1:1285141-1285161 1.0000 20 chr6:44233054-44233074 1.0000 20 chr7:120496911-120496931 1.0000 20 chr6:2245716-2245736 1.0000 20 chr1:1136969-1136989 1.0000 20 chr1:27960900-27960920 1.0000 20 chr4:6718081-6718101 1.0000 20 chr7:151216489-151216509 1.0000 20 chr8:61564693-61564713 1.0000 20 chr15:78423955-78423975 1.0000 20 chr4:36246242-36246262 1.0000 20 chr1:17421284-17421304 1.0000 20 chr19:7398818-7398838 1.0000 20 chr4:156589012-156589032 1.0000 20 chr6:227849-227869 1.0000 20 chr2:131850810-131850830 1.0000 20 chr7:139762554-139762574 1.0000 20 chr5:49963475-49963495 1.0000 20 chr6:12354962-12354982 1.0000 20 chr6:43739168-43739188 1.0000 20 chr15:78177579-78177599 1.0000 20 chr14:50159931-50159951 1.0000 20 chr3:57678566-57678586 1.0000 20 chr2:43614657-43614677 1.0000 20 chr9:116282618-116282638 1.0000 20 chr9:4490438-4490458 1.0000 20 chr4:89300332-89300352 1.0000 20 chr2:61293191-61293211 1.0000 20 chr1:181104113-181104133 1.0000 20 chr1:8703819-8703839 1.0000 20 chr14:45366787-45366807 1.0000 20 chr19:56159699-56159719 1.0000 20 chr5:133463256-133463276 1.0000 20 chr10:52107380-52107400 1.0000 20 chr6:90062367-90062387 1.0000 20 chr6:8064465-8064485 1.0000 20 chr22:50964889-50964909 1.0000 20 chr8:55014249-55014269 1.0000 20 chr14:100535929-10053594 1.0000 20 chr7:127032220-127032240 1.0000 20 chr21:44819640-44819660 1.0000 20 chr6:52442188-52442208 1.0000 20 chr19:33668386-33668406 1.0000 20 chr11:65153935-65153955 1.0000 20 chr14:24550597-24550617 1.0000 20 chr13:53302918-53302938 1.0000 20 chr1:27959418-27959438 1.0000 20 chr19:19516220-19516240 1.0000 20 chr9:113800255-113800275 1.0000 20 chr2:96822925-96822945 1.0000 20 chr4:156874895-156874915 1.0000 20 chr19:17666697-17666717 1.0000 20 chr19:18281881-18281901 1.0000 20 chr14:89029550-89029570 1.0000 20 chr11:63606763-63606783 1.0000 20 chr6:132833892-132833912 1.0000 20 chr3:27525720-27525740 1.0000 20 chr15:23208356-23208376 1.0000 20 chr12:42538437-42538457 1.0000 20 chr4:71705352-71705372 1.0000 20 chr9:1267352-1267372 1.0000 20 chr11:110668232-11066825 1.0000 20 chr5:76886289-76886309 1.0000 20 chr9:129946734-129946754 1.0000 20 chr11:46504849-46504869 1.0000 20 chr12:4257760-4257780 1.0000 20 chr20:47444835-47444855 1.0000 20 chr13:52733571-52733591 1.0000 20 chr9:140197166-140197186 1.0000 20 chr13:40634639-40634659 1.0000 20 chr5:14664861-14664881 1.0000 20 chr13:41363600-41363620 1.0000 20 chr7:70192163-70192183 1.0000 20 chr6:125622866-125622886 1.0000 20 chr19:1183928-1183948 1.0000 20 chr12:129302205-12930222 1.0000 20 chr2:223725982-223726002 1.0000 20 chr3:9932686-9932706 1.0000 20 chr1:24069795-24069815 1.0000 20 chr7:75368916-75368936 1.0000 20 chr7:150020430-150020450 1.0000 20 chr6:149638382-149638402 1.0000 20 chr17:80408598-80408618 1.0000 20 chr10:104210563-10421058 1.0000 20 chr8:22740573-22740593 1.0000 20 chr1:65432011-65432031 1.0000 20 chr1:168523384-168523404 1.0000 20 chr6:149381722-149381742 1.0000 20 chr17:38757976-38757996 1.0000 20 chr7:562290-562310 1.0000 20 chr9:86432274-86432294 1.0000 20 chr11:110167175-11016719 1.0000 20 chr11:537198-537218 1.0000 20 chr4:2757896-2757916 1.0000 20 chr12:46568260-46568280 1.0000 20 chr19:1249052-1249072 1.0000 20 chr1:228674483-228674503 1.0000 20 chr6:33176118-33176138 1.0000 20 chr15:77306806-77306826 1.0000 20 chr11:68039721-68039741 1.0000 20 chr9:131406140-131406160 1.0000 20 chr20:62526435-62526455 1.0000 20 chr15:52029787-52029807 1.0000 20 chr9:127054365-127054385 1.0000 20 chr8:6604131-6604151 1.0000 20 chr6:6546938-6546958 1.0000 20 chr21:47035460-47035480 1.0000 20 chr22:18484076-18484096 1.0000 20 chr9:129933197-129933217 1.0000 20 chr1:1107178-1107198 1.0000 20 chrX:47493386-47493406 1.0000 20 chr2:242674242-242674262 1.0000 20 chr5:149184450-149184470 1.0000 20 chr14:60632054-60632074 1.0000 20 chr3:195919369-195919389 1.0000 20 chr2:242641130-242641150 1.0000 20 chr2:8825849-8825869 1.0000 20 chr21:46352564-46352584 1.0000 20 chr10:11653691-11653711 1.0000 20 chr1:117909667-117909687 1.0000 20 chr13:78775710-78775730 1.0000 20 chr12:131577903-13157792 1.0000 20 chr19:1266993-1267013 1.0000 20 chr1:181478082-181478102 1.0000 20 chr1:160616930-160616950 1.0000 20 chr19:35911352-35911372 1.0000 20 chr1:53192227-53192247 1.0000 20 chr3:4796151-4796171 1.0000 20 chr9:140135027-140135047 1.0000 20 chr6:33138056-33138076 1.0000 20 chr19:4831729-4831749 1.0000 20 chr2:30370852-30370872 1.0000 20 chr18:74534012-74534032 1.0000 20 chr16:30485214-30485234 1.0000 20 chr15:43426007-43426027 1.0000 20 chr9:140500345-140500365 1.0000 20 chr9:101867982-101868002 1.0000 20 chr15:41164156-41164176 1.0000 20 chr19:16698339-16698359 1.0000 20 chr2:102972307-102972327 1.0000 20 chr6:144471371-144471391 1.0000 20 chr15:31556467-31556487 1.0000 20 chr8:141468500-141468520 1.0000 20 chr14:75981359-75981379 1.0000 20 chr3:138553552-138553572 1.0000 20 chr2:206950416-206950436 1.0000 20 chr1:27958261-27958281 1.0000 20 chr1:12227165-12227185 1.0000 20 chrX:18874486-18874506 1.0000 20 chr6:78271822-78271842 1.0000 20 chr3:63897870-63897890 1.0000 20 chr15:40361617-40361637 1.0000 20 chr11:125757857-12575787 1.0000 20 chr1:111747103-111747123 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_GATAD2B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/GATAD2B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.156 C 0.348 G 0.339 T 0.156 Background letter frequencies (from file dataset with add-one prior applied): A 0.156 C 0.348 G 0.339 T 0.156 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CVTGGGRR MEME-1 width = 8 sites = 32 llr = 215 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CVTGGGRR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 13::1:56 pos.-specific C 74:::::: probability G :3:a7954 matrix T 2:a:21:: bits 2.7 * 2.4 * 2.1 * 1.9 * Relative 1.6 ** Entropy 1.3 ** * * (9.7 bits) 1.1 ** *** 0.8 * ****** 0.5 * ****** 0.3 ******** 0.0 -------- Multilevel CCTGGGAA consensus TG GG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVTGGGRR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:110668232-11066825 9 8.03e-06 TGAAGTCT CATGGGAA GCAA chr5:133463256-133463276 3 8.03e-06 GT CATGGGAA ATGGCTGGAC chr5:7794574-7794594 13 8.03e-06 CTTCAGTCCC CATGGGAA chr19:7398818-7398838 2 5.50e-05 C CGTGGGAA CCTCTCCCAG chr12:113527428-11352744 5 5.50e-05 GGTT CGTGGGAA CTCTGCTA chr4:156681270-156681290 12 5.50e-05 CCGGCCTGAG CGTGGGAA C chr14:75981359-75981379 3 1.35e-04 GG CCTGGGGA CATTTGCATG chr6:144471371-144471391 3 1.35e-04 GC CCTGGGGA CCAGAGGACG chr15:41164156-41164176 2 1.35e-04 A CCTGGGGA AACCCGTTTC chr2:8825849-8825869 11 1.35e-04 CTCGGACGGC CCTGGGGA GC chr2:96822925-96822945 1 1.96e-04 . tctGTGAA GCCCTCAGGG chr10:52107380-52107400 3 1.96e-04 GG TATGAGAA CTCTAAAGAA chr1:8703819-8703839 7 1.96e-04 TGCCTC TCTGGGGA GGGAAC chr1:154974271-154974291 7 2.50e-04 GTCACG CGTGGGGA GGGACG chr7:128579606-128579626 8 2.93e-04 GACCAAC CCTGGGAG CAGCA chr1:211870846-211870866 1 2.93e-04 . cctgggag cttattagac chr4:71705352-71705372 6 3.89e-04 ACGCG TCTGggag gcagcgg chr9:140135027-140135047 5 5.22e-04 CGGC TCTGTGGA GAGCTCCC chr2:223725982-223726002 12 5.88e-04 CGGCGCCGGT TGTGGGAG C chr9:129946734-129946754 6 5.88e-04 GCTCC ACTGTGAA ACCTGGC chr8:22740573-22740593 9 7.08e-04 tcctcctt catgagag ccat chr6:78271822-78271842 2 7.50e-04 a tatggggg aaaacactcc chr12:46568260-46568280 4 7.87e-04 TCC CCTGAGAG CATTATTTG chr21:44819640-44819660 10 8.65e-04 tctttccca agtgggga aag chr12:131577903-13157792 13 9.90e-04 GGAAGGGCAC CGTGGGGG chr6:15245089-15245109 3 9.90e-04 CG CGTGGGGG CGTGCGCGAC chr19:18768692-18768712 2 9.90e-04 G CGTGGGGG CCGGAGCGTT chr13:61821953-61821973 6 1.02e-03 tggga aatgtgga ttccctg chr7:156012934-156012954 5 1.02e-03 TGAA CATGGTGA GCCGCAGG chr14:61906283-61906303 11 1.05e-03 GGCCCCAGGT CGTGAGAG AA chr3:178764526-178764546 10 1.13e-03 ccccaattc cctggtga cct chr19:18281881-18281901 11 1.21e-03 GAGCAAAAGC CCTGTGGG Gt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVTGGGRR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:110668232-11066825 8e-06 8_[+1]_4 chr5:133463256-133463276 8e-06 2_[+1]_10 chr5:7794574-7794594 8e-06 12_[+1] chr19:7398818-7398838 5.5e-05 1_[+1]_11 chr12:113527428-11352744 5.5e-05 4_[+1]_8 chr4:156681270-156681290 5.5e-05 11_[+1]_1 chr14:75981359-75981379 0.00013 2_[+1]_10 chr6:144471371-144471391 0.00013 2_[+1]_10 chr15:41164156-41164176 0.00013 1_[+1]_11 chr2:8825849-8825869 0.00013 10_[+1]_2 chr2:96822925-96822945 0.0002 [+1]_12 chr10:52107380-52107400 0.0002 2_[+1]_10 chr1:8703819-8703839 0.0002 6_[+1]_6 chr1:154974271-154974291 0.00025 6_[+1]_6 chr7:128579606-128579626 0.00029 7_[+1]_5 chr1:211870846-211870866 0.00029 [+1]_12 chr4:71705352-71705372 0.00039 5_[+1]_7 chr9:140135027-140135047 0.00052 4_[+1]_8 chr2:223725982-223726002 0.00059 11_[+1]_1 chr9:129946734-129946754 0.00059 5_[+1]_7 chr8:22740573-22740593 0.00071 8_[+1]_4 chr6:78271822-78271842 0.00075 1_[+1]_11 chr12:46568260-46568280 0.00079 3_[+1]_9 chr21:44819640-44819660 0.00087 9_[+1]_3 chr12:131577903-13157792 0.00099 12_[+1] chr6:15245089-15245109 0.00099 2_[+1]_10 chr19:18768692-18768712 0.00099 1_[+1]_11 chr13:61821953-61821973 0.001 5_[+1]_7 chr7:156012934-156012954 0.001 4_[+1]_8 chr14:61906283-61906303 0.0011 10_[+1]_2 chr3:178764526-178764546 0.0011 9_[+1]_3 chr19:18281881-18281901 0.0012 10_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVTGGGRR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CVTGGGRR width=8 seqs=32 chr11:110668232-11066825 ( 9) CATGGGAA 1 chr5:133463256-133463276 ( 3) CATGGGAA 1 chr5:7794574-7794594 ( 13) CATGGGAA 1 chr19:7398818-7398838 ( 2) CGTGGGAA 1 chr12:113527428-11352744 ( 5) CGTGGGAA 1 chr4:156681270-156681290 ( 12) CGTGGGAA 1 chr14:75981359-75981379 ( 3) CCTGGGGA 1 chr6:144471371-144471391 ( 3) CCTGGGGA 1 chr15:41164156-41164176 ( 2) CCTGGGGA 1 chr2:8825849-8825869 ( 11) CCTGGGGA 1 chr2:96822925-96822945 ( 1) TCTGTGAA 1 chr10:52107380-52107400 ( 3) TATGAGAA 1 chr1:8703819-8703839 ( 7) TCTGGGGA 1 chr1:154974271-154974291 ( 7) CGTGGGGA 1 chr7:128579606-128579626 ( 8) CCTGGGAG 1 chr1:211870846-211870866 ( 1) CCTGGGAG 1 chr4:71705352-71705372 ( 6) TCTGGGAG 1 chr9:140135027-140135047 ( 5) TCTGTGGA 1 chr2:223725982-223726002 ( 12) TGTGGGAG 1 chr9:129946734-129946754 ( 6) ACTGTGAA 1 chr8:22740573-22740593 ( 9) CATGAGAG 1 chr6:78271822-78271842 ( 2) TATGGGGG 1 chr12:46568260-46568280 ( 4) CCTGAGAG 1 chr21:44819640-44819660 ( 10) AGTGGGGA 1 chr12:131577903-13157792 ( 13) CGTGGGGG 1 chr6:15245089-15245109 ( 3) CGTGGGGG 1 chr19:18768692-18768712 ( 2) CGTGGGGG 1 chr13:61821953-61821973 ( 6) AATGTGGA 1 chr7:156012934-156012954 ( 5) CATGGTGA 1 chr14:61906283-61906303 ( 11) CGTGAGAG 1 chr3:178764526-178764546 ( 10) CCTGGTGA 1 chr19:18281881-18281901 ( 11) CCTGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVTGGGRR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.98246 E= 1.3e+000 -74 98 -1164 48 68 33 -12 -1164 -1164 -1164 -1164 268 -1164 -1164 156 -1164 -32 -1164 108 0 -1164 -1164 147 -132 168 -1164 56 -1164 200 -1164 15 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVTGGGRR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.3e+000 0.093750 0.687500 0.000000 0.218750 0.250000 0.437500 0.312500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.718750 0.156250 0.000000 0.000000 0.937500 0.062500 0.500000 0.000000 0.500000 0.000000 0.625000 0.000000 0.375000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CVTGGGRR MEME-1 regular expression -------------------------------------------------------------------------------- [CT][CGA]TGGG[AG][AG] -------------------------------------------------------------------------------- Time 1.94 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAWCAMT MEME-2 width = 8 sites = 6 llr = 65 E-value = 6.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAWCAMT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8aa72a52 pos.-specific C ::::8:3: probability G :::::::: matrix T 2::3::28 bits 2.7 ** * 2.4 ** * 2.1 *** * * 1.9 **** * * Relative 1.6 **** * * Entropy 1.3 **** * * (15.7 bits) 1.1 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAAACAAT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWCAMT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:61564693-61564713 12 1.92e-06 CCTCCAGGCC AAAAAAAT C chr6:78271822-78271842 10 4.44e-06 atatggggg aaaacact ccc chr7:70192163-70192183 13 6.36e-06 GTGATCAGGT TAAACAAT chr5:76886289-76886309 4 6.36e-06 GAC AAAACAAA GCAGCCTTA chr14:100535929-10053594 12 7.14e-06 ACCTGTAGCC AAATCATT T chr1:160616930-160616950 7 8.89e-06 GGCTTT AAATCACT TTTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWCAMT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:61564693-61564713 1.9e-06 11_[+2]_1 chr6:78271822-78271842 4.4e-06 9_[+2]_3 chr7:70192163-70192183 6.4e-06 12_[+2] chr5:76886289-76886309 6.4e-06 3_[+2]_9 chr14:100535929-10053594 7.1e-06 11_[+2]_1 chr1:160616930-160616950 8.9e-06 6_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWCAMT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAWCAMT width=8 seqs=6 chr8:61564693-61564713 ( 12) AAAAAAAT 1 chr6:78271822-78271842 ( 10) AAAACACT 1 chr7:70192163-70192183 ( 13) TAAACAAT 1 chr5:76886289-76886309 ( 4) AAAACAAA 1 chr14:100535929-10053594 ( 12) AAATCATT 1 chr1:160616930-160616950 ( 7) AAATCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWCAMT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.52677 E= 6.2e+000 241 -923 -923 9 267 -923 -923 -923 267 -923 -923 -923 209 -923 -923 109 9 126 -923 -923 267 -923 -923 -923 167 -6 -923 9 9 -923 -923 241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWCAMT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 6.2e+000 0.833333 0.000000 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.333333 0.000000 0.166667 0.166667 0.000000 0.000000 0.833333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWCAMT MEME-2 regular expression -------------------------------------------------------------------------------- AAA[AT]CA[AC]T -------------------------------------------------------------------------------- Time 4.51 secs. ******************************************************************************** ******************************************************************************** MOTIF MKTTCYCA MEME-3 width = 8 sites = 13 llr = 112 E-value = 1.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MKTTCYCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5:::22:7 pos.-specific C 4:::85a: probability G :4:::::: matrix T 26aa:3:3 bits 2.7 ** 2.4 ** 2.1 ** 1.9 ** * Relative 1.6 ** ** Entropy 1.3 *** ** (12.4 bits) 1.1 **** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ATTTCCCA consensus CG T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MKTTCYCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:168523384-168523404 8 9.13e-06 ACCACCG ATTTCTCT CTCAT chrX:47493386-47493406 8 1.38e-05 CCTACCC CTTTCTCA CTCAA chr11:64405664-64405684 3 1.38e-05 GG ATTTATCA CCCAGCCGTT chr21:44819640-44819660 2 2.99e-05 t ctttccca agtggggaaa chr9:1267352-1267372 4 3.76e-05 gag ttttccca tgaccagct chr1:27958261-27958281 11 4.78e-05 AAGAAAGAGA AGTTCCCA GG chr3:98332034-98332054 1 4.78e-05 . agttccca cacagccaga chr9:127054365-127054385 12 5.71e-05 GGTACCCTGA CTTTCTCT G chr19:16698339-16698359 11 7.74e-05 CAAAGCCTCA AGTTCACA GC chr9:116282618-116282638 11 7.74e-05 CAGCTCTGGC CTTTCCCT GA chr8:6604131-6604151 5 1.40e-04 ATCA ATTTAACT GCCCCTGC chr15:78177579-78177599 9 1.40e-04 CGAACTTC CGTTCCCA TCTA chr1:31950362-31950382 6 1.54e-04 agtta tgttccca ggaggat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MKTTCYCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:168523384-168523404 9.1e-06 7_[+3]_5 chrX:47493386-47493406 1.4e-05 7_[+3]_5 chr11:64405664-64405684 1.4e-05 2_[+3]_10 chr21:44819640-44819660 3e-05 1_[+3]_11 chr9:1267352-1267372 3.8e-05 3_[+3]_9 chr1:27958261-27958281 4.8e-05 10_[+3]_2 chr3:98332034-98332054 4.8e-05 [+3]_12 chr9:127054365-127054385 5.7e-05 11_[+3]_1 chr19:16698339-16698359 7.7e-05 10_[+3]_2 chr9:116282618-116282638 7.7e-05 10_[+3]_2 chr8:6604131-6604151 0.00014 4_[+3]_8 chr15:78177579-78177599 0.00014 8_[+3]_4 chr1:31950362-31950382 0.00015 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MKTTCYCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MKTTCYCA width=8 seqs=13 chr1:168523384-168523404 ( 8) ATTTCTCT 1 chrX:47493386-47493406 ( 8) CTTTCTCA 1 chr11:64405664-64405684 ( 3) ATTTATCA 1 chr21:44819640-44819660 ( 2) CTTTCCCA 1 chr9:1267352-1267372 ( 4) TTTTCCCA 1 chr1:27958261-27958281 ( 11) AGTTCCCA 1 chr3:98332034-98332054 ( 1) AGTTCCCA 1 chr9:127054365-127054385 ( 12) CTTTCTCT 1 chr19:16698339-16698359 ( 11) AGTTCACA 1 chr9:116282618-116282638 ( 11) CTTTCCCT 1 chr8:6604131-6604151 ( 5) ATTTAACT 1 chr15:78177579-78177599 ( 9) CGTTCCCA 1 chr1:31950362-31950382 ( 6) TGTTCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MKTTCYCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.12759 E= 1.1e+001 156 14 -1035 -2 -1035 -1035 18 197 -1035 -1035 -1035 268 -1035 -1035 -1035 268 -2 128 -1035 -1035 -2 63 -1035 98 -1035 152 -1035 -1035 214 -1035 -1035 98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MKTTCYCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.1e+001 0.461538 0.384615 0.000000 0.153846 0.000000 0.000000 0.384615 0.615385 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.153846 0.846154 0.000000 0.000000 0.153846 0.538462 0.000000 0.307692 0.000000 1.000000 0.000000 0.000000 0.692308 0.000000 0.000000 0.307692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MKTTCYCA MEME-3 regular expression -------------------------------------------------------------------------------- [AC][TG]TTC[CT]C[AT] -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF AGSASAGA MEME-4 width = 8 sites = 10 llr = 84 E-value = 4.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGSASAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 92:91a19 pos.-specific C ::5:4::: probability G :83:5:9: matrix T 1:21:::1 bits 2.7 * 2.4 * 2.1 * * * * 1.9 * * * * Relative 1.6 * * * * Entropy 1.3 * * * * (12.1 bits) 1.1 ** * *** 0.8 ** * *** 0.5 ** * *** 0.3 ******** 0.0 -------- Multilevel AGCAGAGA consensus AG C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSASAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:80408598-80408618 4 8.03e-06 CGC AGCAGAGA GACGCGAAc chr4:156588801-156588821 8 1.99e-05 AGGGAGG AGCACAGA CGGGG chr9:140197166-140197186 10 3.14e-05 CCGTGGCGA AGGAGAGA CCC chr19:10341163-10341183 5 4.85e-05 GACA AGGACAGA GACAGAGG chr3:196189971-196189991 8 5.56e-05 CTCCCAC AATACAGA CTTAA chr19:35911352-35911372 7 7.19e-05 gggaga agcagaaa cttgct chr1:27958261-27958281 1 8.51e-05 . AAGAAAGA GAAGTTCCCA chr3:4796151-4796171 2 1.17e-04 G AGCTGAGA CAGGACCTGA chr3:171515317-171515337 10 1.30e-04 ctggtgcac agtagagt gtg chr9:88861878-88861898 9 1.56e-04 CTGTGATC TGCACAGA GGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSASAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:80408598-80408618 8e-06 3_[+4]_9 chr4:156588801-156588821 2e-05 7_[+4]_5 chr9:140197166-140197186 3.1e-05 9_[+4]_3 chr19:10341163-10341183 4.8e-05 4_[+4]_8 chr3:196189971-196189991 5.6e-05 7_[+4]_5 chr19:35911352-35911372 7.2e-05 6_[+4]_6 chr1:27958261-27958281 8.5e-05 [+4]_12 chr3:4796151-4796171 0.00012 1_[+4]_11 chr3:171515317-171515337 0.00013 9_[+4]_3 chr9:88861878-88861898 0.00016 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSASAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGSASAGA width=8 seqs=10 chr17:80408598-80408618 ( 4) AGCAGAGA 1 chr4:156588801-156588821 ( 8) AGCACAGA 1 chr9:140197166-140197186 ( 10) AGGAGAGA 1 chr19:10341163-10341183 ( 5) AGGACAGA 1 chr3:196189971-196189991 ( 8) AATACAGA 1 chr19:35911352-35911372 ( 7) AGCAGAAA 1 chr1:27958261-27958281 ( 1) AAGAAAGA 1 chr3:4796151-4796171 ( 2) AGCTGAGA 1 chr3:171515317-171515337 ( 10) AGTAGAGT 1 chr9:88861878-88861898 ( 9) TGCACAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSASAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.2854 E= 4.3e+003 252 -997 -997 -65 35 -997 124 -997 -997 52 -18 35 252 -997 -997 -65 -65 20 56 -997 267 -997 -997 -997 -65 -997 141 -997 252 -997 -997 -65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSASAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.3e+003 0.900000 0.000000 0.000000 0.100000 0.200000 0.000000 0.800000 0.000000 0.000000 0.500000 0.300000 0.200000 0.900000 0.000000 0.000000 0.100000 0.100000 0.400000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.900000 0.000000 0.000000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGSASAGA MEME-4 regular expression -------------------------------------------------------------------------------- A[GA][CGT]A[GC]AGA -------------------------------------------------------------------------------- Time 10.41 secs. ******************************************************************************** ******************************************************************************** MOTIF TTAARWTG MEME-5 width = 8 sites = 2 llr = 25 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTAARWTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::aa55:: pos.-specific C :::::::: probability G ::::5::a matrix T aa:::5a: bits 2.7 **** * 2.4 **** * 2.1 **** * 1.9 **** * Relative 1.6 **** *** Entropy 1.3 **** *** (17.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTAAAATG consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAARWTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:129302205-12930222 8 1.52e-06 CCTAACC TTAAAATG CCATT chr13:53302918-53302938 7 4.84e-06 CTAGTG TTAAGTTG GTTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAARWTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:129302205-12930222 1.5e-06 7_[+5]_5 chr13:53302918-53302938 4.8e-06 6_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAARWTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTAARWTG width=8 seqs=2 chr12:129302205-12930222 ( 8) TTAAAATG 1 chr13:53302918-53302938 ( 7) TTAAGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAARWTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 5.4e+003 -765 -765 -765 267 -765 -765 -765 267 267 -765 -765 -765 267 -765 -765 -765 167 -765 56 -765 167 -765 -765 167 -765 -765 -765 267 -765 -765 156 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAARWTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.4e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAARWTG MEME-5 regular expression -------------------------------------------------------------------------------- TTAA[AG][AT]TG -------------------------------------------------------------------------------- Time 13.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:156681270-156681290 5.90e-02 11_[+1(5.50e-05)]_1 chr7:156012934-156012954 1.66e-03 20 chr9:140210754-140210774 9.96e-01 20 chr9:127384448-127384468 4.44e-01 20 chr11:64405664-64405684 4.77e-03 2_[+3(1.38e-05)]_10 chr7:5581418-5581438 4.18e-01 20 chr14:74079435-74079455 9.93e-01 20 chr1:2158977-2158997 9.82e-01 20 chr6:163834580-163834600 9.94e-01 20 chr19:1180562-1180582 6.65e-01 20 chrX:19881722-19881742 6.87e-01 20 chr10:71867323-71867343 7.16e-02 20 chr10:86088635-86088655 9.61e-01 20 chr22:42345667-42345687 4.80e-01 20 chr10:127511653-12751167 7.42e-01 20 chr12:122906874-12290689 1.00e+00 20 chr2:191208445-191208465 4.35e-01 20 chr4:186125114-186125134 1.00e+00 20 chr7:26437937-26437957 9.30e-01 20 chr4:156588801-156588821 1.12e-02 7_[+4(1.99e-05)]_5 chr18:6414789-6414809 5.84e-01 20 chr13:61821953-61821973 1.12e-02 20 chr17:80260097-80260117 8.08e-01 20 chr20:8000191-8000211 9.55e-01 20 chr3:52058011-52058031 8.84e-01 20 chr16:84681850-84681870 9.99e-01 20 chr20:62711066-62711086 2.04e-01 20 chr1:31950362-31950382 4.54e-04 20 chr17:27224586-27224606 9.96e-01 20 chr4:1341215-1341235 9.25e-01 20 chr2:65165217-65165237 8.91e-01 20 chr14:50550569-50550589 6.52e-01 20 chr16:58137075-58137095 5.42e-01 20 chr9:126793439-126793459 4.17e-01 20 chr19:38894025-38894045 6.28e-01 20 chrX:148280977-148280997 9.60e-01 20 chr14:61906283-61906303 1.01e-01 20 chr8:29952911-29952931 7.37e-01 20 chr3:171515317-171515337 7.46e-03 20 chr1:211870846-211870866 5.15e-03 20 chr16:88851925-88851945 9.96e-01 20 chr10:52384840-52384860 6.56e-01 20 chr1:167522874-167522894 1.00e+00 20 chr17:79480153-79480173 9.30e-01 20 chr11:125243823-12524384 8.34e-02 20 chr6:126111922-126111942 9.34e-01 20 chr9:88861878-88861898 1.40e-02 20 chr3:98332034-98332054 2.81e-02 [+3(4.78e-05)]_12 chr7:55154397-55154417 1.24e-01 20 chr10:88471215-88471235 7.87e-01 20 chr3:178764526-178764546 3.03e-03 20 chr3:196189971-196189991 3.50e-03 7_[+4(5.56e-05)]_5 chr2:136742928-136742948 7.46e-01 20 chr3:122283298-122283318 8.53e-01 20 chr12:46777661-46777681 9.98e-01 20 chr10:64287264-64287284 4.30e-02 20 chr17:71278260-71278280 1.76e-01 20 chr16:84927536-84927556 7.30e-02 20 chr3:9957146-9957166 6.39e-01 20 chr4:39046713-39046733 6.12e-02 20 chr17:1391546-1391566 1.00e+00 20 chr17:16311559-16311579 7.81e-03 20 chr21:45284285-45284305 8.68e-01 20 chr1:154974271-154974291 1.30e-01 20 chr1:178995529-178995549 4.74e-01 20 chr3:47204988-47205008 6.23e-01 20 chr7:128579606-128579626 1.49e-01 20 chr1:1093472-1093492 2.18e-01 20 chr16:28519475-28519495 1.05e-01 20 chr13:114145196-11414521 9.74e-01 20 chr11:67169088-67169108 8.16e-01 20 chr19:2052375-2052395 8.66e-02 20 chr9:131464965-131464985 9.90e-01 20 chr19:18768692-18768712 3.71e-01 20 chr6:109415926-109415946 8.15e-01 20 chr19:10341163-10341183 3.87e-02 4_[+4(4.85e-05)]_8 chr21:45627087-45627107 7.25e-01 20 chr8:11142178-11142198 9.98e-01 20 chr22:37596680-37596700 2.68e-01 20 chr19:14202117-14202137 1.00e+00 20 chr16:29937355-29937375 7.03e-01 20 chr5:7794574-7794594 3.56e-04 12_[+1(8.03e-06)] chr12:44229886-44229906 1.00e+00 20 chr18:46478135-46478155 9.09e-01 20 chr22:50765712-50765732 8.96e-01 20 chr1:31192044-31192064 3.50e-01 20 chr5:133406984-133407004 1.74e-02 20 chr4:184644227-184644247 1.00e+00 20 chr17:78234073-78234093 9.55e-01 20 chr1:151810959-151810979 6.31e-01 20 chr1:184943257-184943277 9.99e-01 20 chr12:113527428-11352744 2.31e-02 4_[+1(5.50e-05)]_8 chr20:10655085-10655105 4.84e-01 20 chr14:74058803-74058823 1.00e+00 20 chr15:38915240-38915260 5.56e-01 20 chr6:15245089-15245109 4.88e-01 20 chr1:1285141-1285161 9.79e-01 20 chr6:44233054-44233074 9.95e-01 20 chr7:120496911-120496931 1.44e-01 20 chr6:2245716-2245736 8.07e-01 20 chr1:1136969-1136989 9.95e-01 20 chr1:27960900-27960920 6.34e-01 20 chr4:6718081-6718101 9.69e-01 20 chr7:151216489-151216509 8.98e-01 20 chr8:61564693-61564713 1.90e-04 11_[+2(1.92e-06)]_1 chr15:78423955-78423975 3.04e-01 20 chr4:36246242-36246262 4.51e-01 20 chr1:17421284-17421304 7.47e-01 20 chr19:7398818-7398838 3.37e-03 1_[+1(5.50e-05)]_11 chr4:156589012-156589032 8.95e-01 20 chr6:227849-227869 1.99e-01 20 chr2:131850810-131850830 5.33e-01 20 chr7:139762554-139762574 9.99e-01 20 chr5:49963475-49963495 9.96e-01 20 chr6:12354962-12354982 1.75e-01 20 chr6:43739168-43739188 8.89e-01 20 chr15:78177579-78177599 4.03e-02 20 chr14:50159931-50159951 7.07e-01 20 chr3:57678566-57678586 6.84e-02 20 chr2:43614657-43614677 6.09e-01 20 chr9:116282618-116282638 4.98e-02 10_[+3(7.74e-05)]_2 chr9:4490438-4490458 7.32e-01 20 chr4:89300332-89300352 7.89e-01 20 chr2:61293191-61293211 9.68e-01 20 chr1:181104113-181104133 8.62e-01 20 chr1:8703819-8703839 7.74e-02 20 chr14:45366787-45366807 1.31e-01 20 chr19:56159699-56159719 7.45e-01 20 chr5:133463256-133463276 2.71e-04 2_[+1(8.03e-06)]_10 chr10:52107380-52107400 1.04e-03 20 chr6:90062367-90062387 9.97e-01 20 chr6:8064465-8064485 3.47e-01 20 chr22:50964889-50964909 7.91e-01 20 chr8:55014249-55014269 6.17e-01 20 chr14:100535929-10053594 1.28e-03 11_[+2(7.14e-06)]_1 chr7:127032220-127032240 8.63e-01 20 chr21:44819640-44819660 2.91e-04 1_[+3(2.99e-05)]_11 chr6:52442188-52442208 9.42e-01 20 chr19:33668386-33668406 6.00e-01 20 chr11:65153935-65153955 7.40e-01 20 chr14:24550597-24550617 1.00e+00 20 chr13:53302918-53302938 5.04e-06 6_[+5(4.84e-06)]_6 chr1:27959418-27959438 8.27e-01 20 chr19:19516220-19516240 9.02e-01 20 chr9:113800255-113800275 1.00e+00 20 chr2:96822925-96822945 2.03e-02 20 chr4:156874895-156874915 8.64e-01 20 chr19:17666697-17666717 8.64e-01 20 chr19:18281881-18281901 7.16e-03 20 chr14:89029550-89029570 9.95e-01 20 chr11:63606763-63606783 9.98e-01 20 chr6:132833892-132833912 2.41e-01 20 chr3:27525720-27525740 3.08e-01 20 chr15:23208356-23208376 9.66e-01 20 chr12:42538437-42538457 9.98e-01 20 chr4:71705352-71705372 2.86e-01 20 chr9:1267352-1267372 8.91e-03 3_[+3(3.76e-05)]_9 chr11:110668232-11066825 2.06e-04 8_[+1(8.03e-06)]_4 chr5:76886289-76886309 1.47e-03 3_[+2(6.36e-06)]_9 chr9:129946734-129946754 2.88e-02 20 chr11:46504849-46504869 8.73e-01 20 chr12:4257760-4257780 7.29e-01 20 chr20:47444835-47444855 1.00e+00 20 chr13:52733571-52733591 1.00e+00 20 chr9:140197166-140197186 8.76e-03 9_[+4(3.14e-05)]_3 chr13:40634639-40634659 6.18e-01 20 chr5:14664861-14664881 9.84e-01 20 chr13:41363600-41363620 4.99e-01 20 chr7:70192163-70192183 1.81e-05 12_[+2(6.36e-06)] chr6:125622866-125622886 6.26e-01 20 chr19:1183928-1183948 1.18e-01 20 chr12:129302205-12930222 1.86e-04 7_[+5(1.52e-06)]_5 chr2:223725982-223726002 3.04e-01 20 chr3:9932686-9932706 9.40e-01 20 chr1:24069795-24069815 9.85e-01 20 chr7:75368916-75368936 8.04e-01 20 chr7:150020430-150020450 6.85e-01 20 chr6:149638382-149638402 3.83e-01 20 chr17:80408598-80408618 2.40e-02 3_[+4(8.03e-06)]_9 chr10:104210563-10421058 8.56e-01 20 chr8:22740573-22740593 1.35e-02 20 chr1:65432011-65432031 1.00e-01 20 chr1:168523384-168523404 6.99e-03 7_[+3(9.13e-06)]_5 chr6:149381722-149381742 7.86e-01 20 chr17:38757976-38757996 3.47e-01 20 chr7:562290-562310 3.12e-01 20 chr9:86432274-86432294 8.45e-01 20 chr11:110167175-11016719 8.23e-01 20 chr11:537198-537218 9.75e-01 20 chr4:2757896-2757916 8.86e-01 20 chr12:46568260-46568280 2.95e-03 20 chr19:1249052-1249072 6.56e-01 20 chr1:228674483-228674503 7.51e-01 20 chr6:33176118-33176138 7.81e-01 20 chr15:77306806-77306826 4.40e-02 20 chr11:68039721-68039741 5.60e-01 20 chr9:131406140-131406160 2.91e-01 20 chr20:62526435-62526455 9.56e-01 20 chr15:52029787-52029807 3.61e-01 20 chr9:127054365-127054385 4.05e-02 11_[+3(5.71e-05)]_1 chr8:6604131-6604151 9.65e-04 20 chr6:6546938-6546958 1.00e+00 20 chr21:47035460-47035480 9.20e-02 20 chr22:18484076-18484096 9.83e-01 20 chr9:129933197-129933217 2.96e-01 20 chr1:1107178-1107198 1.80e-01 20 chrX:47493386-47493406 1.02e-02 7_[+3(1.38e-05)]_5 chr2:242674242-242674262 6.98e-01 20 chr5:149184450-149184470 6.18e-03 20 chr14:60632054-60632074 5.21e-01 20 chr3:195919369-195919389 5.52e-02 20 chr2:242641130-242641150 5.08e-01 20 chr2:8825849-8825869 9.91e-02 20 chr21:46352564-46352584 5.83e-01 20 chr10:11653691-11653711 1.00e+00 20 chr1:117909667-117909687 9.85e-01 20 chr13:78775710-78775730 4.51e-01 20 chr12:131577903-13157792 2.50e-01 20 chr19:1266993-1267013 9.92e-01 20 chr1:181478082-181478102 2.17e-01 20 chr1:160616930-160616950 5.31e-05 6_[+2(8.89e-06)]_6 chr19:35911352-35911372 4.49e-03 6_[+4(7.19e-05)]_6 chr1:53192227-53192247 9.98e-01 20 chr3:4796151-4796171 5.13e-02 20 chr9:140135027-140135047 4.82e-02 20 chr6:33138056-33138076 3.58e-02 20 chr19:4831729-4831749 9.97e-01 20 chr2:30370852-30370872 9.88e-01 20 chr18:74534012-74534032 8.59e-01 20 chr16:30485214-30485234 7.84e-01 20 chr15:43426007-43426027 3.05e-01 20 chr9:140500345-140500365 9.52e-01 20 chr9:101867982-101868002 3.10e-01 20 chr15:41164156-41164176 1.55e-02 20 chr19:16698339-16698359 1.30e-04 10_[+3(7.74e-05)]_2 chr2:102972307-102972327 1.88e-01 20 chr6:144471371-144471391 5.13e-02 20 chr15:31556467-31556487 5.41e-01 20 chr8:141468500-141468520 9.27e-01 20 chr14:75981359-75981379 2.25e-03 20 chr3:138553552-138553572 6.30e-01 20 chr2:206950416-206950436 9.91e-01 20 chr1:27958261-27958281 7.03e-06 [+4(8.51e-05)]_2_[+3(4.78e-05)]_2 chr1:12227165-12227185 1.00e+00 20 chrX:18874486-18874506 5.94e-01 20 chr6:78271822-78271842 2.00e-04 9_[+2(4.44e-06)]_3 chr3:63897870-63897890 7.50e-01 20 chr15:40361617-40361637 8.80e-01 20 chr11:125757857-12575787 9.28e-01 20 chr1:111747103-111747123 9.87e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************