******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/GABPA.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:42756892-42756912 1.0000 20 chr7:2178159-2178179 1.0000 20 chr3:130465675-130465695 1.0000 20 chr2:175260420-175260440 1.0000 20 chr7:50132884-50132904 1.0000 20 chr14:70883803-70883823 1.0000 20 chr12:54582857-54582877 1.0000 20 chr7:102988070-102988090 1.0000 20 chr6:28220057-28220077 1.0000 20 chr19:58071244-58071264 1.0000 20 chr15:101874523-10187454 1.0000 20 chr17:37844344-37844364 1.0000 20 chrX:119077758-119077778 1.0000 20 chr16:2892744-2892764 1.0000 20 chr19:55517492-55517512 1.0000 20 chr19:35168198-35168218 1.0000 20 chr7:97601676-97601696 1.0000 20 chr19:44809214-44809234 1.0000 20 chr8:38034005-38034025 1.0000 20 chr17:7358849-7358869 1.0000 20 chr5:79287083-79287103 1.0000 20 chr4:41937147-41937167 1.0000 20 chr2:128051725-128051745 1.0000 20 chr4:119606516-119606536 1.0000 20 chr6:43655528-43655548 1.0000 20 chr9:125675602-125675622 1.0000 20 chr19:57988961-57988981 1.0000 20 chrX:108780048-108780068 1.0000 20 chr3:101280667-101280687 1.0000 20 chr12:32419064-32419084 1.0000 20 chr3:44754105-44754125 1.0000 20 chr1:225654957-225654977 1.0000 20 chr15:71184888-71184908 1.0000 20 chr3:185000686-185000706 1.0000 20 chr10:44101834-44101854 1.0000 20 chr13:114103701-11410372 1.0000 20 chr10:103348015-10334803 1.0000 20 chr2:210867262-210867282 1.0000 20 chr8:146176268-146176288 1.0000 20 chr1:160001804-160001824 1.0000 20 chr19:40562128-40562148 1.0000 20 chr12:50794567-50794587 1.0000 20 chr16:84220670-84220690 1.0000 20 chr19:9879417-9879437 1.0000 20 chr2:27994576-27994596 1.0000 20 chr1:28415123-28415143 1.0000 20 chr6:99873223-99873243 1.0000 20 chr9:129567266-129567286 1.0000 20 chr20:34287298-34287318 1.0000 20 chr5:43515274-43515294 1.0000 20 chr3:13493382-13493402 1.0000 20 chr16:81779979-81779999 1.0000 20 chr19:52643177-52643197 1.0000 20 chr22:40742476-40742496 1.0000 20 chr8:144766618-144766638 1.0000 20 chr5:158690240-158690260 1.0000 20 chr10:15902557-15902577 1.0000 20 chr3:44690201-44690221 1.0000 20 chr18:72265074-72265094 1.0000 20 chr9:33076653-33076673 1.0000 20 chr13:41837712-41837732 1.0000 20 chr2:233415344-233415364 1.0000 20 chr19:58095453-58095473 1.0000 20 chr2:45838419-45838439 1.0000 20 chr13:20161181-20161201 1.0000 20 chr4:110736668-110736688 1.0000 20 chr19:50316598-50316618 1.0000 20 chr15:40675117-40675137 1.0000 20 chr12:69864140-69864160 1.0000 20 chr19:58125563-58125583 1.0000 20 chr8:126575899-126575919 1.0000 20 chr9:34620569-34620589 1.0000 20 chr1:213224559-213224579 1.0000 20 chr17:42264307-42264327 1.0000 20 chr7:44240526-44240546 1.0000 20 chr15:85259397-85259417 1.0000 20 chr1:150039784-150039804 1.0000 20 chr7:39605976-39605996 1.0000 20 chr15:83419276-83419296 1.0000 20 chr6:7389997-7390017 1.0000 20 chr7:5553454-5553474 1.0000 20 chr16:20817791-20817811 1.0000 20 chr2:171786965-171786985 1.0000 20 chr8:11141881-11141901 1.0000 20 chr10:27532011-27532031 1.0000 20 chrX:21857654-21857674 1.0000 20 chr7:44084184-44084204 1.0000 20 chr22:30831851-30831871 1.0000 20 chr2:39005308-39005328 1.0000 20 chr7:135662106-135662126 1.0000 20 chr4:144106069-144106089 1.0000 20 chr3:15469054-15469074 1.0000 20 chrX:19003116-19003136 1.0000 20 chr3:49893984-49894004 1.0000 20 chr5:87564672-87564692 1.0000 20 chr12:9102593-9102613 1.0000 20 chr16:3481961-3481981 1.0000 20 chr19:3185548-3185568 1.0000 20 chr14:75593779-75593799 1.0000 20 chr2:113341994-113342014 1.0000 20 chr1:150266258-150266278 1.0000 20 chr20:2489787-2489807 1.0000 20 chr20:19997950-19997970 1.0000 20 chrX:48595718-48595738 1.0000 20 chr3:132379100-132379120 1.0000 20 chr1:155990769-155990789 1.0000 20 chr12:105630033-10563005 1.0000 20 chr14:69658208-69658228 1.0000 20 chrX:130956173-130956193 1.0000 20 chr1:27216790-27216810 1.0000 20 chr3:178865865-178865885 1.0000 20 chr1:84944888-84944908 1.0000 20 chr15:59981507-59981527 1.0000 20 chr8:125463031-125463051 1.0000 20 chr17:61904507-61904527 1.0000 20 chr2:178483524-178483544 1.0000 20 chr1:111506866-111506886 1.0000 20 chr14:23938906-23938926 1.0000 20 chr19:44669161-44669181 1.0000 20 chr3:180319916-180319936 1.0000 20 chr16:2771146-2771166 1.0000 20 chr5:114598596-114598616 1.0000 20 chr16:31128951-31128971 1.0000 20 chr2:179387891-179387911 1.0000 20 chr12:14956487-14956507 1.0000 20 chr8:146078421-146078441 1.0000 20 chr15:42500507-42500527 1.0000 20 chr7:39663153-39663173 1.0000 20 chr1:20834661-20834681 1.0000 20 chr2:70121060-70121080 1.0000 20 chr3:88199041-88199061 1.0000 20 chr16:12070493-12070513 1.0000 20 chr1:151371976-151371996 1.0000 20 chr19:52901092-52901112 1.0000 20 chr19:507437-507457 1.0000 20 chr19:49497126-49497146 1.0000 20 chr17:15587624-15587644 1.0000 20 chr9:21802514-21802534 1.0000 20 chr10:52499673-52499693 1.0000 20 chr2:118845951-118845971 1.0000 20 chr9:104296064-104296084 1.0000 20 chr8:144329091-144329111 1.0000 20 chr12:53693451-53693471 1.0000 20 chr8:21867751-21867771 1.0000 20 chr19:35264143-35264163 1.0000 20 chr8:117778726-117778746 1.0000 20 chr17:10600867-10600887 1.0000 20 chr22:27068811-27068831 1.0000 20 chr11:45939444-45939464 1.0000 20 chr14:21458099-21458119 1.0000 20 chr19:44716621-44716641 1.0000 20 chr20:18268865-18268885 1.0000 20 chr3:44596663-44596683 1.0000 20 chr20:1373866-1373886 1.0000 20 chr4:57333731-57333751 1.0000 20 chr14:71067369-71067389 1.0000 20 chr12:76742218-76742238 1.0000 20 chr11:18548477-18548497 1.0000 20 chr14:45604980-45605000 1.0000 20 chr22:42078503-42078523 1.0000 20 chr19:9938541-9938561 1.0000 20 chr1:222763277-222763297 1.0000 20 chr17:40172051-40172071 1.0000 20 chr19:8617834-8617854 1.0000 20 chr8:145981001-145981021 1.0000 20 chr14:75179802-75179822 1.0000 20 chr14:99493010-99493030 1.0000 20 chr22:35470744-35470764 1.0000 20 chr22:39190191-39190211 1.0000 20 chr11:124981843-12498186 1.0000 20 chr16:77225045-77225065 1.0000 20 chr18:66382303-66382323 1.0000 20 chr2:25384500-25384520 1.0000 20 chr12:16035303-16035323 1.0000 20 chr5:93954319-93954339 1.0000 20 chr1:168148111-168148131 1.0000 20 chr7:99214547-99214567 1.0000 20 chr1:169337273-169337293 1.0000 20 chr10:70715845-70715865 1.0000 20 chr1:118472306-118472326 1.0000 20 chr10:99161089-99161109 1.0000 20 chr9:125693828-125693848 1.0000 20 chr13:46038955-46038975 1.0000 20 chr14:90722866-90722886 1.0000 20 chr10:102747273-10274729 1.0000 20 chr2:219536714-219536734 1.0000 20 chr13:115000295-11500031 1.0000 20 chr5:16465916-16465936 1.0000 20 chr1:235530709-235530729 1.0000 20 chr7:91875239-91875259 1.0000 20 chr20:55926266-55926286 1.0000 20 chr22:31556099-31556119 1.0000 20 chr5:140071011-140071031 1.0000 20 chr19:44711569-44711589 1.0000 20 chr17:30771453-30771473 1.0000 20 chr15:90234035-90234055 1.0000 20 chr14:21979519-21979539 1.0000 20 chrX:71792924-71792944 1.0000 20 chr14:21852229-21852249 1.0000 20 chr3:125314468-125314488 1.0000 20 chr19:45542278-45542298 1.0000 20 chr11:46958206-46958226 1.0000 20 chr1:2187442-2187462 1.0000 20 chr10:134248081-13424810 1.0000 20 chr8:143751413-143751433 1.0000 20 chr4:76912094-76912114 1.0000 20 chr5:75012945-75012965 1.0000 20 chr19:37825498-37825518 1.0000 20 chr11:102962932-10296295 1.0000 20 chr14:75469614-75469634 1.0000 20 chr11:111957554-11195757 1.0000 20 chr1:40997197-40997217 1.0000 20 chr11:31391371-31391391 1.0000 20 chr15:74988377-74988397 1.0000 20 chr19:51963879-51963899 1.0000 20 chr9:100807837-100807857 1.0000 20 chr2:220462576-220462596 1.0000 20 chr18:33552589-33552609 1.0000 20 chr1:243418820-243418840 1.0000 20 chr20:48532231-48532251 1.0000 20 chr20:30135133-30135153 1.0000 20 chr19:58258124-58258144 1.0000 20 chr20:33999767-33999787 1.0000 20 chr3:121264879-121264899 1.0000 20 chr7:100861295-100861315 1.0000 20 chr18:44676887-44676907 1.0000 20 chr5:167913429-167913449 1.0000 20 chrX:100075371-100075391 1.0000 20 chr19:58111223-58111243 1.0000 20 chr2:241075726-241075746 1.0000 20 chr2:85839209-85839229 1.0000 20 chr19:46366583-46366603 1.0000 20 chr10:89264610-89264630 1.0000 20 chr19:57999050-57999070 1.0000 20 chr18:39535006-39535026 1.0000 20 chr14:78174387-78174407 1.0000 20 chr7:129691220-129691240 1.0000 20 chr5:76326206-76326226 1.0000 20 chr1:161123959-161123979 1.0000 20 chr11:45376978-45376998 1.0000 20 chr2:152144868-152144888 1.0000 20 chr2:17935381-17935401 1.0000 20 chr3:179322471-179322491 1.0000 20 chr22:18111548-18111568 1.0000 20 chr16:89307675-89307695 1.0000 20 chr1:165738120-165738140 1.0000 20 chr12:1913842-1913862 1.0000 20 chr22:26908449-26908469 1.0000 20 chr14:35452132-35452152 1.0000 20 chr1:185663337-185663357 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_GABPA/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/GABPA.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.2 C 0.296 G 0.295 T 0.209 Background letter frequencies (from file dataset with add-one prior applied): A 0.2 C 0.296 G 0.295 T 0.209 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCTTCCGG MEME-1 width = 8 sites = 74 llr = 502 E-value = 1.7e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 61:::::: pos.-specific C :6:1aa:3 probability G 41::::87 matrix T 12a9::21 bits 2.3 2.1 * 1.9 ** * 1.6 **** Relative 1.4 **** Entropy 1.2 **** (9.8 bits) 0.9 ***** 0.7 * ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACTTCCGG consensus GT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:89307675-89307695 3 1.97e-05 gg aCTTCCgg gggtaaggga chr2:85839209-85839229 6 1.97e-05 TCCTG ACTTCCGG TCTGGGA chr2:241075726-241075746 1 1.97e-05 . ACTTCCGG CCTCAGAGCC chr11:31391371-31391391 7 1.97e-05 ACAGTG ACTTCCGG CGGAAG chr19:44669161-44669181 5 1.97e-05 AGGC ACTTCCGG CTCGAGGA chr2:128051725-128051745 2 1.97e-05 G ACTTCCGG CTCAATCCGG chr4:41937147-41937167 7 1.97e-05 AGGAGC ACTTCCGG GTTCGG chr1:185663337-185663357 4 3.36e-05 ggt atttccgg cctcgctga chr5:140071011-140071031 7 3.36e-05 AAAATT ATTTCCGG CTCCTC chr20:55926266-55926286 1 3.36e-05 . ATTTCCGG GCGACGCAGG chr1:160001804-160001824 1 3.36e-05 . ATTTCCGG TCCGTGGGAG chr1:165738120-165738140 9 6.27e-05 GCACTTCC GCTTCCGG GGCA chr5:167913429-167913449 11 6.27e-05 GGGGGTTTCC GCTTCCGG GA chr14:75179802-75179822 4 6.27e-05 TCC GCTTCCGG GCTATCCTT chr19:9938541-9938561 8 6.27e-05 GGGCAGG GCTTCCGG CCTCG chr1:150266258-150266278 11 6.27e-05 CGTAATTTCC GCTTCCGG TA chr16:3481961-3481981 4 6.27e-05 GTG GCTTCCGG TTCCTCACC chr7:39605976-39605996 5 6.27e-05 TGGC GCTTCCGG TGGCCTGC chr19:52643177-52643197 3 6.27e-05 CT GCTTCCGG GAGTGACGGA chr2:210867262-210867282 1 6.27e-05 . GCTTCCGG TAGAATCCGG chr5:42756892-42756912 7 6.27e-05 GATTCG GCTTCCGG AGGAGG chr19:37825498-37825518 3 8.25e-05 TC ACTTCCGC TCCCCTCCCT chr14:90722866-90722886 6 8.25e-05 TAACG ACTTCCGC CTCTGGC chr6:7389997-7390017 6 8.25e-05 GCGGG ACTTCCGC TCAAGTC chr8:144766618-144766638 12 8.25e-05 TCGGATAACA ACTTCCGC T chr12:54582857-54582877 2 8.25e-05 C ACTTCCGC CGGAAATGCT chrX:130956173-130956193 5 9.65e-05 GACA ACTTCCTG TGCCCGGA chr3:49893984-49894004 10 9.65e-05 CGCAGCACG ACTTCCTG GAG chr22:30831851-30831871 3 9.65e-05 GC ACTTCCTG CCTCTGCTGG chr2:171786965-171786985 5 9.65e-05 GTGC ACTTCCTG GTGCTACC chr13:41837712-41837732 5 9.65e-05 GTTC ACTTCCTG GTTCACTT chr19:52901092-52901112 11 1.17e-04 CTAGAGCGCA GTTTCCGG TA chr14:75593779-75593799 8 1.17e-04 TCTCTGT GTTTCCGG CCTGG chr19:58111223-58111243 2 1.31e-04 C ATTTCCGC TCTGTCCAAC chr3:178865865-178865885 13 1.70e-04 CCTCAATTTC GCTTCCGC chr19:57988961-57988981 8 1.70e-04 AACGCCT ATTTCCTG GGTTT chr8:125463031-125463051 8 2.04e-04 TATATTT AGTTCCGG CCTCT chr7:5553454-5553474 4 2.04e-04 CGC ACTTCCGT TCGTCCGCA chr19:40562128-40562148 11 2.17e-04 TGGAACCGCT AATTCCGG TG chr8:146176268-146176288 3 2.17e-04 CG AATTCCGG CCCGCCGCTC chr3:185000686-185000706 8 2.17e-04 CCGGTGG AATTCCGG CCGGA chr19:51963879-51963899 11 2.58e-04 ttccctgttt gcttcctg ga chr1:40997197-40997217 8 2.58e-04 TCTGACG TCTTCCGG AAACG chr10:70715845-70715865 7 2.58e-04 TCCTGT GCTTCCTG CTTCCC chr5:75012945-75012965 2 2.72e-04 C ACTTCCTC TTCCTGCACG chr19:58258124-58258144 12 2.93e-04 AAATAAAGGC GTTTCCGC G chr19:49497126-49497146 9 2.93e-04 GCGTTTCC GTTTCCGC TAGG chr19:58095453-58095473 10 2.93e-04 AAAAGGGTC GTTTCCGC TTT chr5:158690240-158690260 1 3.03e-04 . ATTTCCGT TTCAAACCAC chr17:10600867-10600887 13 5.46e-04 GTAGCGTTCC GCTTCCTC chr1:150039784-150039804 11 5.46e-04 GGCTGCCCGG ACTCCCGG AA chr2:220462576-220462596 3 5.89e-04 GG ACTTCCTT TCCATCATTG chr19:3185548-3185568 11 5.89e-04 CCAGGCAGGC ACTTCCTT TT chr9:125675602-125675622 6 5.89e-04 AAAAC ACATCCGG TGCCAAC chr18:44676887-44676907 12 7.27e-04 GAAGCCCCGG ATTTCCCG G chr17:61904507-61904527 2 7.27e-04 G TTTTCCGC CATTTTGAGT chr8:145981001-145981021 11 7.77e-04 AGCCAGCCGC GGTTCCGC CC chr20:19997950-19997970 4 7.77e-04 CTC GGTTCCGC GGCGGCCAC chr10:102747273-10274729 13 9.30e-04 CGGGACGACC GCTCCCGG chr14:78174387-78174407 2 1.10e-03 G TGTTCCGG ATCCGGAAAT chr7:44240526-44240546 3 1.10e-03 CT GCATCCGG AGTATGAGAA chr4:110736668-110736688 13 1.10e-03 GTTATACGTC ACTTCCAC chr10:103348015-10334803 1 1.29e-03 . GCTTCCGA GTCAGCCGGA chr2:70121060-70121080 1 1.36e-03 . GTTCCCGG CCCTCCCGGA chr2:175260420-175260440 9 1.36e-03 GGAACTGC GTTTCCAG CAGC chr14:71067369-71067389 11 1.53e-03 TACAGGTTCT CTTTCCGG CG chr11:45376978-45376998 9 1.56e-03 CGCGCCCA ATTTTCGC TTCC chr7:129691220-129691240 6 1.69e-03 GAGTT GCTTCCCC GAGAGTT chr9:100807837-100807857 3 1.87e-03 tc acttccct ttttctgtcg chr1:168148111-168148131 1 1.87e-03 . AGTCCCGG AAGCAAAAAG chr1:155990769-155990789 5 1.87e-03 GTGG TGTTCCGC CCAATGCC chr4:144106069-144106089 7 2.18e-03 ACTTCA AAATCCGG GTCAAA chr9:129567266-129567286 1 2.18e-03 . AGTTTCGG GGGGCGGGAC chr12:50794567-50794587 2 2.18e-03 T TCTCCCGG AAACAATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89307675-89307695 2e-05 2_[+1]_10 chr2:85839209-85839229 2e-05 5_[+1]_7 chr2:241075726-241075746 2e-05 [+1]_12 chr11:31391371-31391391 2e-05 6_[+1]_6 chr19:44669161-44669181 2e-05 4_[+1]_8 chr2:128051725-128051745 2e-05 1_[+1]_11 chr4:41937147-41937167 2e-05 6_[+1]_6 chr1:185663337-185663357 3.4e-05 3_[+1]_9 chr5:140071011-140071031 3.4e-05 6_[+1]_6 chr20:55926266-55926286 3.4e-05 [+1]_12 chr1:160001804-160001824 3.4e-05 [+1]_12 chr1:165738120-165738140 6.3e-05 8_[+1]_4 chr5:167913429-167913449 6.3e-05 10_[+1]_2 chr14:75179802-75179822 6.3e-05 3_[+1]_9 chr19:9938541-9938561 6.3e-05 7_[+1]_5 chr1:150266258-150266278 6.3e-05 10_[+1]_2 chr16:3481961-3481981 6.3e-05 3_[+1]_9 chr7:39605976-39605996 6.3e-05 4_[+1]_8 chr19:52643177-52643197 6.3e-05 2_[+1]_10 chr2:210867262-210867282 6.3e-05 [+1]_12 chr5:42756892-42756912 6.3e-05 6_[+1]_6 chr19:37825498-37825518 8.3e-05 2_[+1]_10 chr14:90722866-90722886 8.3e-05 5_[+1]_7 chr6:7389997-7390017 8.3e-05 5_[+1]_7 chr8:144766618-144766638 8.3e-05 11_[+1]_1 chr12:54582857-54582877 8.3e-05 1_[+1]_11 chrX:130956173-130956193 9.6e-05 4_[+1]_8 chr3:49893984-49894004 9.6e-05 9_[+1]_3 chr22:30831851-30831871 9.6e-05 2_[+1]_10 chr2:171786965-171786985 9.6e-05 4_[+1]_8 chr13:41837712-41837732 9.6e-05 4_[+1]_8 chr19:52901092-52901112 0.00012 10_[+1]_2 chr14:75593779-75593799 0.00012 7_[+1]_5 chr19:58111223-58111243 0.00013 1_[+1]_11 chr3:178865865-178865885 0.00017 12_[+1] chr19:57988961-57988981 0.00017 7_[+1]_5 chr8:125463031-125463051 0.0002 7_[+1]_5 chr7:5553454-5553474 0.0002 3_[+1]_9 chr19:40562128-40562148 0.00022 10_[+1]_2 chr8:146176268-146176288 0.00022 2_[+1]_10 chr3:185000686-185000706 0.00022 7_[+1]_5 chr19:51963879-51963899 0.00026 10_[+1]_2 chr1:40997197-40997217 0.00026 7_[+1]_5 chr10:70715845-70715865 0.00026 6_[+1]_6 chr5:75012945-75012965 0.00027 1_[+1]_11 chr19:58258124-58258144 0.00029 11_[+1]_1 chr19:49497126-49497146 0.00029 8_[+1]_4 chr19:58095453-58095473 0.00029 9_[+1]_3 chr5:158690240-158690260 0.0003 [+1]_12 chr17:10600867-10600887 0.00055 12_[+1] chr1:150039784-150039804 0.00055 10_[+1]_2 chr2:220462576-220462596 0.00059 2_[+1]_10 chr19:3185548-3185568 0.00059 10_[+1]_2 chr9:125675602-125675622 0.00059 5_[+1]_7 chr18:44676887-44676907 0.00073 11_[+1]_1 chr17:61904507-61904527 0.00073 1_[+1]_11 chr8:145981001-145981021 0.00078 10_[+1]_2 chr20:19997950-19997970 0.00078 3_[+1]_9 chr10:102747273-10274729 0.00093 12_[+1] chr14:78174387-78174407 0.0011 1_[+1]_11 chr7:44240526-44240546 0.0011 2_[+1]_10 chr4:110736668-110736688 0.0011 12_[+1] chr10:103348015-10334803 0.0013 [+1]_12 chr2:70121060-70121080 0.0014 [+1]_12 chr2:175260420-175260440 0.0014 8_[+1]_4 chr14:71067369-71067389 0.0015 10_[+1]_2 chr11:45376978-45376998 0.0016 8_[+1]_4 chr7:129691220-129691240 0.0017 5_[+1]_7 chr9:100807837-100807857 0.0019 2_[+1]_10 chr1:168148111-168148131 0.0019 [+1]_12 chr1:155990769-155990789 0.0019 4_[+1]_8 chr4:144106069-144106089 0.0022 6_[+1]_6 chr9:129567266-129567286 0.0022 [+1]_12 chr12:50794567-50794587 0.0022 1_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCTTCCGG width=8 seqs=74 chr16:89307675-89307695 ( 3) ACTTCCGG 1 chr2:85839209-85839229 ( 6) ACTTCCGG 1 chr2:241075726-241075746 ( 1) ACTTCCGG 1 chr11:31391371-31391391 ( 7) ACTTCCGG 1 chr19:44669161-44669181 ( 5) ACTTCCGG 1 chr2:128051725-128051745 ( 2) ACTTCCGG 1 chr4:41937147-41937167 ( 7) ACTTCCGG 1 chr1:185663337-185663357 ( 4) ATTTCCGG 1 chr5:140071011-140071031 ( 7) ATTTCCGG 1 chr20:55926266-55926286 ( 1) ATTTCCGG 1 chr1:160001804-160001824 ( 1) ATTTCCGG 1 chr1:165738120-165738140 ( 9) GCTTCCGG 1 chr5:167913429-167913449 ( 11) GCTTCCGG 1 chr14:75179802-75179822 ( 4) GCTTCCGG 1 chr19:9938541-9938561 ( 8) GCTTCCGG 1 chr1:150266258-150266278 ( 11) GCTTCCGG 1 chr16:3481961-3481981 ( 4) GCTTCCGG 1 chr7:39605976-39605996 ( 5) GCTTCCGG 1 chr19:52643177-52643197 ( 3) GCTTCCGG 1 chr2:210867262-210867282 ( 1) GCTTCCGG 1 chr5:42756892-42756912 ( 7) GCTTCCGG 1 chr19:37825498-37825518 ( 3) ACTTCCGC 1 chr14:90722866-90722886 ( 6) ACTTCCGC 1 chr6:7389997-7390017 ( 6) ACTTCCGC 1 chr8:144766618-144766638 ( 12) ACTTCCGC 1 chr12:54582857-54582877 ( 2) ACTTCCGC 1 chrX:130956173-130956193 ( 5) ACTTCCTG 1 chr3:49893984-49894004 ( 10) ACTTCCTG 1 chr22:30831851-30831871 ( 3) ACTTCCTG 1 chr2:171786965-171786985 ( 5) ACTTCCTG 1 chr13:41837712-41837732 ( 5) ACTTCCTG 1 chr19:52901092-52901112 ( 11) GTTTCCGG 1 chr14:75593779-75593799 ( 8) GTTTCCGG 1 chr19:58111223-58111243 ( 2) ATTTCCGC 1 chr3:178865865-178865885 ( 13) GCTTCCGC 1 chr19:57988961-57988981 ( 8) ATTTCCTG 1 chr8:125463031-125463051 ( 8) AGTTCCGG 1 chr7:5553454-5553474 ( 4) ACTTCCGT 1 chr19:40562128-40562148 ( 11) AATTCCGG 1 chr8:146176268-146176288 ( 3) AATTCCGG 1 chr3:185000686-185000706 ( 8) AATTCCGG 1 chr19:51963879-51963899 ( 11) GCTTCCTG 1 chr1:40997197-40997217 ( 8) TCTTCCGG 1 chr10:70715845-70715865 ( 7) GCTTCCTG 1 chr5:75012945-75012965 ( 2) ACTTCCTC 1 chr19:58258124-58258144 ( 12) GTTTCCGC 1 chr19:49497126-49497146 ( 9) GTTTCCGC 1 chr19:58095453-58095473 ( 10) GTTTCCGC 1 chr5:158690240-158690260 ( 1) ATTTCCGT 1 chr17:10600867-10600887 ( 13) GCTTCCTC 1 chr1:150039784-150039804 ( 11) ACTCCCGG 1 chr2:220462576-220462596 ( 3) ACTTCCTT 1 chr19:3185548-3185568 ( 11) ACTTCCTT 1 chr9:125675602-125675622 ( 6) ACATCCGG 1 chr18:44676887-44676907 ( 12) ATTTCCCG 1 chr17:61904507-61904527 ( 2) TTTTCCGC 1 chr8:145981001-145981021 ( 11) GGTTCCGC 1 chr20:19997950-19997970 ( 4) GGTTCCGC 1 chr10:102747273-10274729 ( 13) GCTCCCGG 1 chr14:78174387-78174407 ( 2) TGTTCCGG 1 chr7:44240526-44240546 ( 3) GCATCCGG 1 chr4:110736668-110736688 ( 13) ACTTCCAC 1 chr10:103348015-10334803 ( 1) GCTTCCGA 1 chr2:70121060-70121080 ( 1) GTTCCCGG 1 chr2:175260420-175260440 ( 9) GTTTCCAG 1 chr14:71067369-71067389 ( 11) CTTTCCGG 1 chr11:45376978-45376998 ( 9) ATTTTCGC 1 chr7:129691220-129691240 ( 6) GCTTCCCC 1 chr9:100807837-100807857 ( 3) ACTTCCCT 1 chr1:168148111-168148131 ( 1) AGTCCCGG 1 chr1:155990769-155990789 ( 5) TGTTCCGC 1 chr4:144106069-144106089 ( 7) AAATCCGG 1 chr9:129567266-129567286 ( 1) AGTTTCGG 1 chr12:50794567-50794587 ( 2) TCTCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.59223 E= 1.7e-050 147 -445 31 -163 -189 104 -164 22 -230 -1285 -1285 220 -1285 -213 -1285 215 -1285 172 -1285 -295 -1285 176 -1285 -1285 -289 -286 138 -37 -389 -20 117 -163 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 1.7e-050 0.554054 0.013514 0.364865 0.067568 0.054054 0.608108 0.094595 0.243243 0.040541 0.000000 0.000000 0.959459 0.000000 0.067568 0.000000 0.932432 0.000000 0.972973 0.000000 0.027027 0.000000 1.000000 0.000000 0.000000 0.027027 0.040541 0.770270 0.162162 0.013514 0.256757 0.662162 0.067568 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 regular expression -------------------------------------------------------------------------------- [AG][CT]TTCCG[GC] -------------------------------------------------------------------------------- Time 1.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGAAGTR MEME-2 width = 8 sites = 54 llr = 389 E-value = 1.5e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGAAGTR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::a9212 pos.-specific C 8:::::31 probability G :aa:1714 matrix T ::::::62 bits 2.3 * 2.1 ** 1.9 **** 1.6 **** Relative 1.4 **** Entropy 1.2 **** (10.4 bits) 0.9 ****** 0.7 ****** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CGGAAGTG consensus ACA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:75469614-75469634 9 1.87e-05 GCCCGCCC CGGAAGTG CAAA chr2:25384500-25384520 6 1.87e-05 CCCAG CGGAAGTG GCCCATG chr16:77225045-77225065 10 1.87e-05 GGTCGTACC CGGAAGTG TGG chr12:53693451-53693471 2 1.87e-05 G CGGAAGTG GGGCTGCGCT chr17:15587624-15587644 1 1.87e-05 . CGGAAGTG CGCGCCGAGG chr7:39663153-39663173 6 1.87e-05 CGCCC CGGAAGTG ATCTGTG chr14:35452132-35452152 10 3.14e-05 CCCCGGAAG CGGAAGTA GAT chr2:233415344-233415364 8 3.14e-05 GCAAAAC CGGAAGTA CCCGG chr5:79287083-79287103 5 3.14e-05 ATCC CGGAAGTA CTTTTCCT chr15:90234035-90234055 11 4.47e-05 CGGTTCAAGC CGGAAGTT GT chr12:9102593-9102613 2 4.47e-05 G CGGAAGTT ACGCAGGCAG chr15:40675117-40675137 13 4.47e-05 GCCTAGCTAC CGGAAGTT chr2:45838419-45838439 4 4.47e-05 CGC CGGAAGTT TTTCAAACG chr22:26908449-26908469 7 5.74e-05 GCGCGC CGGAAATG ACGTTA chr2:219536714-219536734 5 5.74e-05 GAAC CGGAAATG CCCTTAGG chr5:93954319-93954339 1 5.74e-05 . CGGAAATG GTACTATCGC chr12:54582857-54582877 10 5.74e-05 CACTTCCGC CGGAAATG CTC chr4:76912094-76912114 8 6.60e-05 GTATGAC CGGAAATA GCGCA chr13:46038955-46038975 8 6.60e-05 TTTCAAC CGGAAATA GTCGT chr1:20834661-20834681 12 9.26e-05 ACGCCGGAAC CGGAAGCG G chr8:146078421-146078441 6 9.26e-05 GTCCC CGGAAGCG CCCTGAG chr19:44809214-44809234 8 9.26e-05 TCCTAAG CGGAAGCG TCTCA chr14:78174387-78174407 13 1.02e-04 GTTCCGGATC CGGAAATT chr3:44596663-44596683 2 1.51e-04 G CGGAAGTC GAGGCCTCTC chr20:18268865-18268885 12 1.51e-04 GTACCGGGTG CGGAAGTC G chr2:39005308-39005328 5 1.51e-04 GGGA AGGAAGTG ACGATCGG chr8:126575899-126575919 1 1.51e-04 . AGGAAGTG TTACCCTGGA chr10:15902557-15902577 3 1.51e-04 CC CGGAAGTC CCCTCCCCGG chr2:27994576-27994596 3 1.51e-04 CC CGGAAGCA GTTGTTGTTG chr19:55517492-55517512 12 1.51e-04 TGTAGAAGAC AGGAAGTG A chr10:89264610-89264630 10 1.78e-04 CTCCGGAGC CGGAAGCT GGG chr1:213224559-213224579 8 1.78e-04 CCTGGCC CGGAAGCT TCTCT chr19:58125563-58125583 10 1.78e-04 CCCTGCGGA CGGAAGCT CTC chr11:124981843-12498186 6 2.05e-04 TTGGG CGGAAGAG AGAGACT chr1:27216790-27216810 6 2.35e-04 AGCGT CGGAAACG GCGAGCC chrX:19003116-19003136 10 2.35e-04 GACCCAGCC CGGAAGAA AAA chr9:125693828-125693848 2 3.08e-04 C CGGAAGGG CAGCCCTGGC chr13:114103701-11410372 12 3.45e-04 GAGGCTCACC CGGAAGGA G chrX:100075371-100075391 13 3.89e-04 TTTGGCGCAC CGGAAGCC chr2:179387891-179387911 4 4.26e-04 TTG CGGAAGGT GGGGTGTGG chr1:222763277-222763297 5 4.73e-04 CTTC TGGAAGTG ACCCAGGA chr13:20161181-20161201 7 5.40e-04 GGGGCA CGGAAAGG CCCGCA chr17:7358849-7358869 13 5.70e-04 CCCATGCTCT CGGAAGAC chr19:44711569-44711589 3 6.32e-04 AG CGGAACTA TGGCCGGTTT chr15:83419276-83419296 6 6.70e-04 CGCGC AGGAAACG AGAAGGG chr7:97601676-97601696 9 6.70e-04 CGCCGACC AGGAAGAA GAAC chr3:101280667-101280687 12 7.15e-04 AGGGAGAGGG CGGAACTT C chr5:43515274-43515294 9 7.85e-04 TCCACAAC AGGAAGGG CCGG chr14:70883803-70883823 3 8.58e-04 AA AGGAAGCC CGAAGGACTC chr22:31556099-31556119 9 9.35e-04 TTCAGCCA TGGAAATT AACC chr1:151371976-151371996 3 9.93e-04 AC AGGAAAAA GAAAGAAATG chr17:42264307-42264327 5 1.14e-03 GGCG CGGAGGCG GGACTTCC chr19:46366583-46366603 8 1.29e-03 GTCCCTT CGGAGGCA CCGGG chr16:84220670-84220690 8 1.29e-03 CCTCCTG CGGAGGCA GGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:75469614-75469634 1.9e-05 8_[+2]_4 chr2:25384500-25384520 1.9e-05 5_[+2]_7 chr16:77225045-77225065 1.9e-05 9_[+2]_3 chr12:53693451-53693471 1.9e-05 1_[+2]_11 chr17:15587624-15587644 1.9e-05 [+2]_12 chr7:39663153-39663173 1.9e-05 5_[+2]_7 chr14:35452132-35452152 3.1e-05 9_[+2]_3 chr2:233415344-233415364 3.1e-05 7_[+2]_5 chr5:79287083-79287103 3.1e-05 4_[+2]_8 chr15:90234035-90234055 4.5e-05 10_[+2]_2 chr12:9102593-9102613 4.5e-05 1_[+2]_11 chr15:40675117-40675137 4.5e-05 12_[+2] chr2:45838419-45838439 4.5e-05 3_[+2]_9 chr22:26908449-26908469 5.7e-05 6_[+2]_6 chr2:219536714-219536734 5.7e-05 4_[+2]_8 chr5:93954319-93954339 5.7e-05 [+2]_12 chr12:54582857-54582877 5.7e-05 9_[+2]_3 chr4:76912094-76912114 6.6e-05 7_[+2]_5 chr13:46038955-46038975 6.6e-05 7_[+2]_5 chr1:20834661-20834681 9.3e-05 11_[+2]_1 chr8:146078421-146078441 9.3e-05 5_[+2]_7 chr19:44809214-44809234 9.3e-05 7_[+2]_5 chr14:78174387-78174407 0.0001 12_[+2] chr3:44596663-44596683 0.00015 1_[+2]_11 chr20:18268865-18268885 0.00015 11_[+2]_1 chr2:39005308-39005328 0.00015 4_[+2]_8 chr8:126575899-126575919 0.00015 [+2]_12 chr10:15902557-15902577 0.00015 2_[+2]_10 chr2:27994576-27994596 0.00015 2_[+2]_10 chr19:55517492-55517512 0.00015 11_[+2]_1 chr10:89264610-89264630 0.00018 9_[+2]_3 chr1:213224559-213224579 0.00018 7_[+2]_5 chr19:58125563-58125583 0.00018 9_[+2]_3 chr11:124981843-12498186 0.00021 5_[+2]_7 chr1:27216790-27216810 0.00024 5_[+2]_7 chrX:19003116-19003136 0.00024 9_[+2]_3 chr9:125693828-125693848 0.00031 1_[+2]_11 chr13:114103701-11410372 0.00034 11_[+2]_1 chrX:100075371-100075391 0.00039 12_[+2] chr2:179387891-179387911 0.00043 3_[+2]_9 chr1:222763277-222763297 0.00047 4_[+2]_8 chr13:20161181-20161201 0.00054 6_[+2]_6 chr17:7358849-7358869 0.00057 12_[+2] chr19:44711569-44711589 0.00063 2_[+2]_10 chr15:83419276-83419296 0.00067 5_[+2]_7 chr7:97601676-97601696 0.00067 8_[+2]_4 chr3:101280667-101280687 0.00071 11_[+2]_1 chr5:43515274-43515294 0.00078 8_[+2]_4 chr14:70883803-70883823 0.00086 2_[+2]_10 chr22:31556099-31556119 0.00093 8_[+2]_4 chr1:151371976-151371996 0.00099 2_[+2]_10 chr17:42264307-42264327 0.0011 4_[+2]_8 chr19:46366583-46366603 0.0013 7_[+2]_5 chr16:84220670-84220690 0.0013 7_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGAAGTR width=8 seqs=54 chr14:75469614-75469634 ( 9) CGGAAGTG 1 chr2:25384500-25384520 ( 6) CGGAAGTG 1 chr16:77225045-77225065 ( 10) CGGAAGTG 1 chr12:53693451-53693471 ( 2) CGGAAGTG 1 chr17:15587624-15587644 ( 1) CGGAAGTG 1 chr7:39663153-39663173 ( 6) CGGAAGTG 1 chr14:35452132-35452152 ( 10) CGGAAGTA 1 chr2:233415344-233415364 ( 8) CGGAAGTA 1 chr5:79287083-79287103 ( 5) CGGAAGTA 1 chr15:90234035-90234055 ( 11) CGGAAGTT 1 chr12:9102593-9102613 ( 2) CGGAAGTT 1 chr15:40675117-40675137 ( 13) CGGAAGTT 1 chr2:45838419-45838439 ( 4) CGGAAGTT 1 chr22:26908449-26908469 ( 7) CGGAAATG 1 chr2:219536714-219536734 ( 5) CGGAAATG 1 chr5:93954319-93954339 ( 1) CGGAAATG 1 chr12:54582857-54582877 ( 10) CGGAAATG 1 chr4:76912094-76912114 ( 8) CGGAAATA 1 chr13:46038955-46038975 ( 8) CGGAAATA 1 chr1:20834661-20834681 ( 12) CGGAAGCG 1 chr8:146078421-146078441 ( 6) CGGAAGCG 1 chr19:44809214-44809234 ( 8) CGGAAGCG 1 chr14:78174387-78174407 ( 13) CGGAAATT 1 chr3:44596663-44596683 ( 2) CGGAAGTC 1 chr20:18268865-18268885 ( 12) CGGAAGTC 1 chr2:39005308-39005328 ( 5) AGGAAGTG 1 chr8:126575899-126575919 ( 1) AGGAAGTG 1 chr10:15902557-15902577 ( 3) CGGAAGTC 1 chr2:27994576-27994596 ( 3) CGGAAGCA 1 chr19:55517492-55517512 ( 12) AGGAAGTG 1 chr10:89264610-89264630 ( 10) CGGAAGCT 1 chr1:213224559-213224579 ( 8) CGGAAGCT 1 chr19:58125563-58125583 ( 10) CGGAAGCT 1 chr11:124981843-12498186 ( 6) CGGAAGAG 1 chr1:27216790-27216810 ( 6) CGGAAACG 1 chrX:19003116-19003136 ( 10) CGGAAGAA 1 chr9:125693828-125693848 ( 2) CGGAAGGG 1 chr13:114103701-11410372 ( 12) CGGAAGGA 1 chrX:100075371-100075391 ( 13) CGGAAGCC 1 chr2:179387891-179387911 ( 4) CGGAAGGT 1 chr1:222763277-222763297 ( 5) TGGAAGTG 1 chr13:20161181-20161201 ( 7) CGGAAAGG 1 chr17:7358849-7358869 ( 13) CGGAAGAC 1 chr19:44711569-44711589 ( 3) CGGAACTA 1 chr15:83419276-83419296 ( 6) AGGAAACG 1 chr7:97601676-97601696 ( 9) AGGAAGAA 1 chr3:101280667-101280687 ( 12) CGGAACTT 1 chr5:43515274-43515294 ( 9) AGGAAGGG 1 chr14:70883803-70883823 ( 3) AGGAAGCC 1 chr22:31556099-31556119 ( 9) TGGAAATT 1 chr1:151371976-151371996 ( 3) AGGAAAAA 1 chr17:42264307-42264327 ( 5) CGGAGGCG 1 chr19:46366583-46366603 ( 8) CGGAGGCA 1 chr16:84220670-84220690 ( 8) CGGAGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.68424 E= 1.5e-035 -43 146 -1240 -250 -1240 -1240 176 -1240 -1240 -1240 176 -1240 232 -1240 -1240 -1240 224 -1240 -241 -1240 15 -299 133 -1240 -111 -19 -167 141 27 -141 59 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.5e-035 0.148148 0.814815 0.000000 0.037037 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.222222 0.037037 0.740741 0.000000 0.092593 0.259259 0.092593 0.555556 0.240741 0.111111 0.444444 0.203704 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTR MEME-2 regular expression -------------------------------------------------------------------------------- CGGAA[GA][TC][GAT] -------------------------------------------------------------------------------- Time 4.99 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAKAAA MEME-3 width = 8 sites = 7 llr = 68 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAKAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7a7a1aa7 pos.-specific C :::::::3 probability G 3:::6::: matrix T ::3:3::: bits 2.3 * * ** 2.1 * * ** 1.9 * * ** 1.6 * * ** Relative 1.4 **** *** Entropy 1.2 **** *** (13.9 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAGAAA consensus G T T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAKAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:111506866-111506886 13 3.78e-06 AACAAATCGC AAAAGAAA chr19:58258124-58258144 1 6.45e-06 . AAAATAAA GGCGTTTCCG chr1:151371976-151371996 11 2.69e-05 ACAGGAAAAA GAAAGAAA TG chr16:31128951-31128971 5 2.69e-05 AGCC AAAAGAAC TGCGTGGC chrX:119077758-119077778 12 2.69e-05 TGTGTGCATC AATATAAA T chr2:178483524-178483544 10 3.75e-05 TCTGTTAGG AATAAAAA GGG chr5:114598596-114598616 4 7.32e-05 AGA GAAAGAAC CCTCCTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAKAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:111506866-111506886 3.8e-06 12_[+3] chr19:58258124-58258144 6.5e-06 [+3]_12 chr1:151371976-151371996 2.7e-05 10_[+3]_2 chr16:31128951-31128971 2.7e-05 4_[+3]_8 chrX:119077758-119077778 2.7e-05 11_[+3]_1 chr2:178483524-178483544 3.7e-05 9_[+3]_3 chr5:114598596-114598616 7.3e-05 3_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAKAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAKAAA width=8 seqs=7 chr1:111506866-111506886 ( 13) AAAAGAAA 1 chr19:58258124-58258144 ( 1) AAAATAAA 1 chr1:151371976-151371996 ( 11) GAAAGAAA 1 chr16:31128951-31128971 ( 5) AAAAGAAC 1 chrX:119077758-119077778 ( 12) AATATAAA 1 chr2:178483524-178483544 ( 10) AATAAAAA 1 chr5:114598596-114598616 ( 4) GAAAGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAKAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.0799 E= 1.1e+002 183 -945 -5 -945 232 -945 -945 -945 183 -945 -945 45 232 -945 -945 -945 -48 -945 95 45 232 -945 -945 -945 232 -945 -945 -945 183 -5 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAKAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.1e+002 0.714286 0.000000 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.000000 0.285714 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.571429 0.285714 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAKAAA MEME-3 regular expression -------------------------------------------------------------------------------- [AG]A[AT]A[GT]AA[AC] -------------------------------------------------------------------------------- Time 7.89 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACAATT MEME-4 width = 8 sites = 2 llr = 25 E-value = 8.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACAATT MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaa:aa:: pos.-specific C :::a:::: probability G :::::::: matrix T ::::::aa bits 2.3 *** **** 2.1 *** **** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAACAATT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAATT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:44716621-44716641 1 4.14e-06 . AAACAATT GGGCCGCAGG chr12:50794567-50794587 10 4.14e-06 TTCTCCCGG AAACAATT TTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAATT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:44716621-44716641 4.1e-06 [+4]_12 chr12:50794567-50794587 4.1e-06 9_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAATT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACAATT width=8 seqs=2 chr19:44716621-44716641 ( 1) AAACAATT 1 chr12:50794567-50794587 ( 10) AAACAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAATT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 8.6e+002 232 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 -765 175 -765 -765 232 -765 -765 -765 232 -765 -765 -765 -765 -765 -765 225 -765 -765 -765 225 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAATT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.6e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAATT MEME-4 regular expression -------------------------------------------------------------------------------- AAACAATT -------------------------------------------------------------------------------- Time 10.89 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGYAAAA MEME-5 width = 8 sites = 2 llr = 23 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGYAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa::aaaa pos.-specific C :::5:::: probability G ::a::::: matrix T :::5:::: bits 2.3 ** **** 2.1 ** **** 1.9 *** **** 1.6 *** **** Relative 1.4 *** **** Entropy 1.2 *** **** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGCAAAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGYAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:84944888-84944908 2 3.95e-06 G AAGTAAAA GGTTAAGGAA chr1:168148111-168148131 9 9.53e-06 AGTCCCGG AAGCAAAA AGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGYAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:84944888-84944908 3.9e-06 1_[+5]_11 chr1:168148111-168148131 9.5e-06 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGYAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGYAAAA width=8 seqs=2 chr1:84944888-84944908 ( 2) AAGTAAAA 1 chr1:168148111-168148131 ( 9) AAGCAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGYAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.8e+003 232 -765 -765 -765 232 -765 -765 -765 -765 -765 176 -765 -765 76 -765 125 232 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGYAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.8e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGYAAAA MEME-5 regular expression -------------------------------------------------------------------------------- AAG[CT]AAAA -------------------------------------------------------------------------------- Time 11.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:42756892-42756912 1.30e-02 6_[+1(6.27e-05)]_6 chr7:2178159-2178179 4.72e-01 20 chr3:130465675-130465695 7.90e-01 20 chr2:175260420-175260440 5.70e-01 20 chr7:50132884-50132904 7.79e-01 20 chr14:70883803-70883823 6.47e-03 20 chr12:54582857-54582877 2.20e-04 1_[+1(8.25e-05)]_[+2(5.74e-05)]_3 chr7:102988070-102988090 1.57e-02 20 chr6:28220057-28220077 1.44e-01 20 chr19:58071244-58071264 9.98e-01 20 chr15:101874523-10187454 7.68e-01 20 chr17:37844344-37844364 9.67e-01 20 chrX:119077758-119077778 1.29e-03 11_[+3(2.69e-05)]_1 chr16:2892744-2892764 2.41e-01 20 chr19:55517492-55517512 7.48e-03 20 chr19:35168198-35168218 8.87e-01 20 chr7:97601676-97601696 3.78e-04 20 chr19:44809214-44809234 9.90e-03 7_[+2(9.26e-05)]_5 chr8:38034005-38034025 4.31e-01 20 chr17:7358849-7358869 7.22e-02 20 chr5:79287083-79287103 7.80e-04 4_[+2(3.14e-05)]_8 chr4:41937147-41937167 2.13e-03 6_[+1(1.97e-05)]_6 chr2:128051725-128051745 3.50e-02 1_[+1(1.97e-05)]_11 chr4:119606516-119606536 1.75e-01 20 chr6:43655528-43655548 9.35e-01 20 chr9:125675602-125675622 6.31e-04 20 chr19:57988961-57988981 1.82e-01 20 chrX:108780048-108780068 9.34e-01 20 chr3:101280667-101280687 6.30e-02 20 chr12:32419064-32419084 4.35e-01 20 chr3:44754105-44754125 8.40e-01 20 chr1:225654957-225654977 3.13e-01 20 chr15:71184888-71184908 1.68e-02 20 chr3:185000686-185000706 4.14e-02 20 chr10:44101834-44101854 9.83e-01 20 chr13:114103701-11410372 5.36e-02 20 chr10:103348015-10334803 4.27e-01 20 chr2:210867262-210867282 1.70e-03 [+1(6.27e-05)]_12 chr8:146176268-146176288 2.81e-01 20 chr1:160001804-160001824 5.37e-02 [+1(3.36e-05)]_12 chr19:40562128-40562148 1.56e-02 20 chr12:50794567-50794587 6.80e-07 9_[+4(4.14e-06)]_3 chr16:84220670-84220690 2.17e-01 20 chr19:9879417-9879437 9.60e-01 20 chr2:27994576-27994596 7.00e-03 20 chr1:28415123-28415143 4.99e-01 20 chr6:99873223-99873243 9.27e-01 20 chr9:129567266-129567286 4.19e-01 20 chr20:34287298-34287318 9.86e-01 20 chr5:43515274-43515294 3.22e-02 20 chr3:13493382-13493402 9.96e-01 20 chr16:81779979-81779999 9.83e-01 20 chr19:52643177-52643197 1.98e-02 2_[+1(6.27e-05)]_10 chr22:40742476-40742496 9.99e-01 20 chr8:144766618-144766638 1.18e-04 11_[+1(8.25e-05)]_1 chr5:158690240-158690260 3.01e-02 20 chr10:15902557-15902577 5.48e-02 20 chr3:44690201-44690221 3.97e-01 20 chr18:72265074-72265094 1.09e-02 20 chr9:33076653-33076673 5.08e-01 20 chr13:41837712-41837732 1.54e-01 4_[+1(9.65e-05)]_8 chr2:233415344-233415364 1.04e-03 7_[+2(3.14e-05)]_5 chr19:58095453-58095473 9.50e-02 20 chr2:45838419-45838439 1.73e-02 3_[+2(4.47e-05)]_9 chr13:20161181-20161201 2.68e-02 20 chr4:110736668-110736688 3.10e-01 20 chr19:50316598-50316618 3.02e-02 20 chr15:40675117-40675137 3.21e-02 12_[+2(4.47e-05)] chr12:69864140-69864160 8.17e-01 20 chr19:58125563-58125583 7.37e-02 20 chr8:126575899-126575919 1.46e-02 20 chr9:34620569-34620589 8.48e-01 20 chr1:213224559-213224579 1.23e-01 20 chr17:42264307-42264327 5.07e-01 20 chr7:44240526-44240546 9.22e-02 20 chr15:85259397-85259417 8.87e-01 20 chr1:150039784-150039804 3.65e-01 20 chr7:39605976-39605996 8.55e-02 4_[+1(6.27e-05)]_8 chr15:83419276-83419296 2.97e-03 20 chr6:7389997-7390017 4.29e-02 5_[+1(8.25e-05)]_7 chr7:5553454-5553474 2.85e-01 20 chr16:20817791-20817811 9.91e-01 20 chr2:171786965-171786985 1.04e-01 4_[+1(9.65e-05)]_8 chr8:11141881-11141901 8.11e-01 20 chr10:27532011-27532031 8.94e-02 20 chrX:21857654-21857674 3.25e-02 20 chr7:44084184-44084204 9.01e-01 20 chr22:30831851-30831871 2.03e-01 2_[+1(9.65e-05)]_10 chr2:39005308-39005328 1.32e-03 20 chr7:135662106-135662126 7.73e-01 20 chr4:144106069-144106089 8.59e-02 20 chr3:15469054-15469074 5.85e-01 20 chrX:19003116-19003136 5.26e-06 12_[+5(1.89e-05)] chr3:49893984-49894004 3.22e-02 9_[+1(9.65e-05)]_3 chr5:87564672-87564692 6.20e-01 20 chr12:9102593-9102613 6.35e-03 1_[+2(4.47e-05)]_11 chr16:3481961-3481981 1.47e-01 3_[+1(6.27e-05)]_9 chr19:3185548-3185568 6.84e-02 20 chr14:75593779-75593799 2.24e-01 20 chr2:113341994-113342014 1.73e-01 20 chr1:150266258-150266278 8.32e-02 10_[+1(6.27e-05)]_2 chr20:2489787-2489807 7.44e-01 20 chr20:19997950-19997970 3.24e-01 20 chrX:48595718-48595738 3.35e-01 20 chr3:132379100-132379120 9.95e-01 20 chr1:155990769-155990789 5.08e-01 20 chr12:105630033-10563005 4.92e-01 20 chr14:69658208-69658228 2.17e-01 20 chrX:130956173-130956193 1.07e-01 4_[+1(9.65e-05)]_8 chr1:27216790-27216810 8.83e-02 20 chr3:178865865-178865885 8.13e-02 20 chr1:84944888-84944908 4.27e-05 1_[+5(3.95e-06)]_11 chr15:59981507-59981527 1.90e-01 20 chr8:125463031-125463051 1.18e-01 20 chr17:61904507-61904527 3.92e-01 20 chr2:178483524-178483544 2.09e-04 9_[+3(3.75e-05)]_3 chr1:111506866-111506886 2.31e-05 12_[+3(3.78e-06)] chr14:23938906-23938926 9.89e-01 20 chr19:44669161-44669181 9.38e-03 4_[+1(1.97e-05)]_8 chr3:180319916-180319936 9.95e-01 20 chr16:2771146-2771166 9.98e-01 20 chr5:114598596-114598616 2.30e-04 3_[+3(7.32e-05)]_9 chr16:31128951-31128971 1.86e-05 4_[+3(2.69e-05)]_8 chr2:179387891-179387911 3.55e-01 20 chr12:14956487-14956507 1.29e-02 20 chr8:146078421-146078441 8.32e-02 5_[+2(9.26e-05)]_7 chr15:42500507-42500527 9.60e-01 20 chr7:39663153-39663173 7.11e-03 5_[+2(1.87e-05)]_7 chr1:20834661-20834681 2.01e-02 11_[+2(9.26e-05)]_1 chr2:70121060-70121080 5.81e-01 20 chr3:88199041-88199061 9.10e-01 20 chr16:12070493-12070513 7.73e-01 20 chr1:151371976-151371996 2.21e-07 6_[+3(3.78e-06)]_6 chr19:52901092-52901112 1.13e-01 20 chr19:507437-507457 9.98e-01 20 chr19:49497126-49497146 3.40e-01 20 chr17:15587624-15587644 5.10e-02 [+2(1.87e-05)]_12 chr9:21802514-21802534 3.63e-01 20 chr10:52499673-52499693 8.12e-01 20 chr2:118845951-118845971 9.29e-01 20 chr9:104296064-104296084 9.98e-01 20 chr8:144329091-144329111 9.99e-01 20 chr12:53693451-53693471 5.69e-02 1_[+2(1.87e-05)]_11 chr8:21867751-21867771 1.01e-03 20 chr19:35264143-35264163 9.98e-01 20 chr8:117778726-117778746 7.79e-01 20 chr17:10600867-10600887 1.24e-01 20 chr22:27068811-27068831 6.13e-01 20 chr11:45939444-45939464 9.99e-01 20 chr14:21458099-21458119 9.78e-01 20 chr19:44716621-44716641 1.61e-03 [+4(4.14e-06)]_12 chr20:18268865-18268885 1.06e-01 20 chr3:44596663-44596683 6.70e-02 20 chr20:1373866-1373886 3.54e-01 20 chr4:57333731-57333751 9.91e-01 20 chr14:71067369-71067389 5.86e-01 20 chr12:76742218-76742238 4.19e-02 20 chr11:18548477-18548497 4.65e-01 20 chr14:45604980-45605000 7.13e-01 20 chr22:42078503-42078523 9.75e-01 20 chr19:9938541-9938561 1.16e-01 7_[+1(6.27e-05)]_5 chr1:222763277-222763297 3.22e-02 20 chr17:40172051-40172071 5.30e-01 20 chr19:8617834-8617854 7.55e-01 20 chr8:145981001-145981021 4.47e-01 20 chr14:75179802-75179822 1.45e-01 3_[+1(6.27e-05)]_9 chr14:99493010-99493030 6.52e-01 20 chr22:35470744-35470764 1.10e-01 20 chr22:39190191-39190211 7.71e-02 20 chr11:124981843-12498186 7.29e-03 20 chr16:77225045-77225065 8.76e-03 9_[+2(1.87e-05)]_3 chr18:66382303-66382323 2.95e-01 20 chr2:25384500-25384520 2.54e-02 5_[+2(1.87e-05)]_7 chr12:16035303-16035323 9.51e-01 20 chr5:93954319-93954339 9.23e-03 [+2(5.74e-05)]_12 chr1:168148111-168148131 4.43e-07 8_[+5(9.53e-06)]_4 chr7:99214547-99214567 8.87e-01 20 chr1:169337273-169337293 8.91e-03 20 chr10:70715845-70715865 3.17e-01 20 chr1:118472306-118472326 9.77e-02 20 chr10:99161089-99161109 9.30e-01 20 chr9:125693828-125693848 1.50e-01 20 chr13:46038955-46038975 8.12e-04 7_[+2(6.60e-05)]_5 chr14:90722866-90722886 2.92e-02 5_[+1(8.25e-05)]_7 chr10:102747273-10274729 2.70e-01 20 chr2:219536714-219536734 8.97e-03 4_[+2(5.74e-05)]_8 chr13:115000295-11500031 5.85e-01 20 chr5:16465916-16465936 9.09e-01 20 chr1:235530709-235530729 6.70e-01 20 chr7:91875239-91875259 6.05e-01 20 chr20:55926266-55926286 1.87e-02 [+1(3.36e-05)]_12 chr22:31556099-31556119 3.23e-03 20 chr5:140071011-140071031 2.10e-04 6_[+1(3.36e-05)]_6 chr19:44711569-44711589 8.28e-02 20 chr17:30771453-30771473 3.26e-01 20 chr15:90234035-90234055 3.10e-02 10_[+2(4.47e-05)]_2 chr14:21979519-21979539 8.46e-01 20 chrX:71792924-71792944 9.57e-01 20 chr14:21852229-21852249 9.19e-01 20 chr3:125314468-125314488 3.96e-01 20 chr19:45542278-45542298 9.76e-01 20 chr11:46958206-46958226 9.89e-01 20 chr1:2187442-2187462 6.49e-01 20 chr10:134248081-13424810 9.27e-01 20 chr8:143751413-143751433 9.05e-01 20 chr4:76912094-76912114 2.21e-03 7_[+2(6.60e-05)]_5 chr5:75012945-75012965 3.19e-01 20 chr19:37825498-37825518 1.88e-01 2_[+1(8.25e-05)]_10 chr11:102962932-10296295 4.19e-01 20 chr14:75469614-75469634 2.48e-03 8_[+2(1.87e-05)]_4 chr11:111957554-11195757 8.26e-01 20 chr1:40997197-40997217 4.65e-03 20 chr11:31391371-31391391 1.13e-02 6_[+1(1.97e-05)]_6 chr15:74988377-74988397 9.55e-01 20 chr19:51963879-51963899 3.23e-01 20 chr9:100807837-100807857 6.76e-01 20 chr2:220462576-220462596 2.98e-01 20 chr18:33552589-33552609 3.82e-01 20 chr1:243418820-243418840 1.26e-01 20 chr20:48532231-48532251 3.26e-01 20 chr20:30135133-30135153 7.38e-01 20 chr19:58258124-58258144 8.93e-07 [+3(6.45e-06)]_12 chr20:33999767-33999787 7.12e-02 20 chr3:121264879-121264899 1.39e-02 20 chr7:100861295-100861315 1.71e-01 20 chr18:44676887-44676907 2.84e-01 20 chr5:167913429-167913449 1.60e-01 10_[+1(6.27e-05)]_2 chrX:100075371-100075391 1.87e-01 20 chr19:58111223-58111243 1.43e-01 20 chr2:241075726-241075746 4.50e-02 [+1(1.97e-05)]_12 chr2:85839209-85839229 7.83e-02 5_[+1(1.97e-05)]_7 chr19:46366583-46366603 3.91e-01 20 chr10:89264610-89264630 1.38e-01 20 chr19:57999050-57999070 1.03e-03 20 chr18:39535006-39535026 3.07e-01 20 chr14:78174387-78174407 3.83e-03 20 chr7:129691220-129691240 3.02e-01 20 chr5:76326206-76326226 8.23e-01 20 chr1:161123959-161123979 7.07e-02 20 chr11:45376978-45376998 2.79e-01 20 chr2:152144868-152144888 5.43e-02 20 chr2:17935381-17935401 9.97e-01 20 chr3:179322471-179322491 1.53e-01 20 chr22:18111548-18111568 7.78e-01 20 chr16:89307675-89307695 1.53e-02 2_[+1(1.97e-05)]_10 chr1:165738120-165738140 1.44e-01 8_[+1(6.27e-05)]_4 chr12:1913842-1913862 7.02e-01 20 chr22:26908449-26908469 2.60e-03 6_[+2(5.74e-05)]_6 chr14:35452132-35452152 1.09e-03 9_[+2(3.14e-05)]_3 chr1:185663337-185663357 9.72e-02 3_[+1(3.36e-05)]_9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************