******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/FOXK2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:133862639-133862659 1.0000 20 chr22:36635644-36635664 1.0000 20 chr15:44975634-44975654 1.0000 20 chr2:97590143-97590163 1.0000 20 chr2:87303658-87303678 1.0000 20 chr3:160389218-160389238 1.0000 20 chr10:71712688-71712708 1.0000 20 chr16:75682602-75682622 1.0000 20 chr11:57103078-57103098 1.0000 20 chr7:44078928-44078948 1.0000 20 chr1:26437711-26437731 1.0000 20 chr1:204283546-204283566 1.0000 20 chr16:70100023-70100043 1.0000 20 chr6:160114507-160114527 1.0000 20 chr6:35231466-35231486 1.0000 20 chr3:129813251-129813271 1.0000 20 chr18:46472974-46472994 1.0000 20 chr3:111578414-111578434 1.0000 20 chrX:49022877-49022897 1.0000 20 chrX:43513992-43514012 1.0000 20 chrX:48858068-48858088 1.0000 20 chr12:56224477-56224497 1.0000 20 chr8:17013359-17013379 1.0000 20 chr19:42927414-42927434 1.0000 20 chr3:160473073-160473093 1.0000 20 chr7:2595257-2595277 1.0000 20 chr8:38124757-38124777 1.0000 20 chr3:159647452-159647472 1.0000 20 chr1:84464967-84464987 1.0000 20 chr15:44958744-44958764 1.0000 20 chr11:129150116-12915013 1.0000 20 chr6:148663826-148663846 1.0000 20 chr1:24235458-24235478 1.0000 20 chr5:180671304-180671324 1.0000 20 chr6:150325844-150325864 1.0000 20 chr20:19884030-19884050 1.0000 20 chr5:150284698-150284718 1.0000 20 chr21:38629493-38629513 1.0000 20 chr1:116549379-116549399 1.0000 20 chr19:50167683-50167703 1.0000 20 chr11:47290783-47290803 1.0000 20 chr19:49653752-49653772 1.0000 20 chr6:153296686-153296706 1.0000 20 chr11:64683886-64683906 1.0000 20 chr16:88522525-88522545 1.0000 20 chrX:47880834-47880854 1.0000 20 chr1:156119539-156119559 1.0000 20 chr17:40439516-40439536 1.0000 20 chr16:15730466-15730486 1.0000 20 chr13:115078893-11507891 1.0000 20 chr11:34460834-34460854 1.0000 20 chr7:99964640-99964660 1.0000 20 chr22:46984487-46984507 1.0000 20 chr6:83073358-83073378 1.0000 20 chr7:16685615-16685635 1.0000 20 chr8:107669925-107669945 1.0000 20 chr2:231730808-231730828 1.0000 20 chr17:7743429-7743449 1.0000 20 chr2:86947279-86947299 1.0000 20 chr16:15736787-15736807 1.0000 20 chr9:135285434-135285454 1.0000 20 chr22:24129751-24129771 1.0000 20 chr11:9594429-9594449 1.0000 20 chrX:129304824-129304844 1.0000 20 chr14:52118285-52118305 1.0000 20 chr6:96753068-96753088 1.0000 20 chr10:115720645-11572066 1.0000 20 chr19:49649592-49649612 1.0000 20 chr16:85260348-85260368 1.0000 20 chr17:7343925-7343945 1.0000 20 chr3:79068782-79068802 1.0000 20 chr11:45921504-45921524 1.0000 20 chr3:184374926-184374946 1.0000 20 chr8:107282288-107282308 1.0000 20 chr12:3936788-3936808 1.0000 20 chr11:111749540-11174956 1.0000 20 chr17:36955678-36955698 1.0000 20 chr16:67694539-67694559 1.0000 20 chr21:44394228-44394248 1.0000 20 chr19:42721307-42721327 1.0000 20 chr11:911172-911192 1.0000 20 chr1:153518418-153518438 1.0000 20 chr19:40791052-40791072 1.0000 20 chr1:14925023-14925043 1.0000 20 chr1:1677861-1677881 1.0000 20 chr1:6550714-6550734 1.0000 20 chrX:19002658-19002678 1.0000 20 chr3:13040889-13040909 1.0000 20 chr6:32121706-32121726 1.0000 20 chr7:66460681-66460701 1.0000 20 chr16:29973147-29973167 1.0000 20 chr2:87303857-87303877 1.0000 20 chr6:167372919-167372939 1.0000 20 chrX:118827282-118827302 1.0000 20 chr3:51533505-51533525 1.0000 20 chr12:56615225-56615245 1.0000 20 chr2:120301848-120301868 1.0000 20 chr1:200860521-200860541 1.0000 20 chr13:53029237-53029257 1.0000 20 chr19:44139416-44139436 1.0000 20 chr7:104909652-104909672 1.0000 20 chr10:112201585-11220160 1.0000 20 chr7:92219270-92219290 1.0000 20 chrX:48858800-48858820 1.0000 20 chr8:94916655-94916675 1.0000 20 chr7:99724892-99724912 1.0000 20 chr22:18539309-18539329 1.0000 20 chrX:48937547-48937567 1.0000 20 chr12:106696409-10669642 1.0000 20 chr2:74007264-74007284 1.0000 20 chr2:86790208-86790228 1.0000 20 chr16:15068702-15068722 1.0000 20 chr12:113623394-11362341 1.0000 20 chr1:19923039-19923059 1.0000 20 chr11:66034881-66034901 1.0000 20 chr5:173345078-173345098 1.0000 20 chr1:36489258-36489278 1.0000 20 chrX:118708450-118708470 1.0000 20 chr5:41864199-41864219 1.0000 20 chrX:47225562-47225582 1.0000 20 chr2:10550508-10550528 1.0000 20 chr19:42807069-42807089 1.0000 20 chr3:3670734-3670754 1.0000 20 chr17:58042286-58042306 1.0000 20 chr9:91955439-91955459 1.0000 20 chr7:107204244-107204264 1.0000 20 chrX:47420787-47420807 1.0000 20 chrX:48595998-48596018 1.0000 20 chr20:62580730-62580750 1.0000 20 chr19:49141727-49141747 1.0000 20 chr19:48621201-48621221 1.0000 20 chr17:36453203-36453223 1.0000 20 chr15:48624193-48624213 1.0000 20 chrX:49020417-49020437 1.0000 20 chr1:208037374-208037394 1.0000 20 chr18:23670711-23670731 1.0000 20 chr11:57416776-57416796 1.0000 20 chr14:56046699-56046719 1.0000 20 chr5:169724856-169724876 1.0000 20 chr9:130538802-130538822 1.0000 20 chr14:99727674-99727694 1.0000 20 chr10:116127117-11612713 1.0000 20 chrX:48755378-48755398 1.0000 20 chr8:356955-356975 1.0000 20 chr12:21138544-21138564 1.0000 20 chr1:204477050-204477070 1.0000 20 chr4:90032280-90032300 1.0000 20 chr14:22984648-22984668 1.0000 20 chr8:124553522-124553542 1.0000 20 chr9:34637908-34637928 1.0000 20 chr1:167191644-167191664 1.0000 20 chr1:36621441-36621461 1.0000 20 chrX:119077757-119077777 1.0000 20 chr1:1624440-1624460 1.0000 20 chr20:41182152-41182172 1.0000 20 chr17:58428600-58428620 1.0000 20 chr1:40283064-40283084 1.0000 20 chr8:17941746-17941766 1.0000 20 chr16:788254-788274 1.0000 20 chrX:47050139-47050159 1.0000 20 chr7:100887732-100887752 1.0000 20 chr18:658236-658256 1.0000 20 chrX:47479277-47479297 1.0000 20 chr8:95908017-95908037 1.0000 20 chr16:89753892-89753912 1.0000 20 chr2:217082223-217082243 1.0000 20 chr17:77774561-77774581 1.0000 20 chr9:126703000-126703020 1.0000 20 chr7:102920624-102920644 1.0000 20 chr3:187463407-187463427 1.0000 20 chr3:194406484-194406504 1.0000 20 chr12:50794395-50794415 1.0000 20 chr22:26690756-26690776 1.0000 20 chr11:129872547-12987256 1.0000 20 chr13:76112122-76112142 1.0000 20 chr3:42054302-42054322 1.0000 20 chr6:15586341-15586361 1.0000 20 chr14:39736436-39736456 1.0000 20 chr2:24943452-24943472 1.0000 20 chr3:13690078-13690098 1.0000 20 chr6:31670879-31670899 1.0000 20 chr4:77870776-77870796 1.0000 20 chr19:10443721-10443741 1.0000 20 chr2:208387934-208387954 1.0000 20 chr1:43609306-43609326 1.0000 20 chr22:39052529-39052549 1.0000 20 chr1:6052181-6052201 1.0000 20 chr10:99094602-99094622 1.0000 20 chr5:176328871-176328891 1.0000 20 chr7:107384055-107384075 1.0000 20 chr14:92867183-92867203 1.0000 20 chrX:47077932-47077952 1.0000 20 chr10:116286784-11628680 1.0000 20 chr1:161379783-161379803 1.0000 20 chr20:2633165-2633185 1.0000 20 chr6:74171355-74171375 1.0000 20 chr1:9970779-9970799 1.0000 20 chr1:38231976-38231996 1.0000 20 chr19:10908380-10908400 1.0000 20 chr8:79428402-79428422 1.0000 20 chr7:140396375-140396395 1.0000 20 chr19:36869945-36869965 1.0000 20 chr12:12816850-12816870 1.0000 20 chr22:39541800-39541820 1.0000 20 chr7:43909143-43909163 1.0000 20 chr1:11539053-11539073 1.0000 20 chr18:3449124-3449144 1.0000 20 chrX:53449295-53449315 1.0000 20 chr2:231070019-231070039 1.0000 20 chr3:9438453-9438473 1.0000 20 chr9:137000946-137000966 1.0000 20 chr19:49653042-49653062 1.0000 20 chr9:6757219-6757239 1.0000 20 chr14:23067239-23067259 1.0000 20 chr6:149794445-149794465 1.0000 20 chr19:30335335-30335355 1.0000 20 chr9:100263672-100263692 1.0000 20 chr17:31187296-31187316 1.0000 20 chr13:30989872-30989892 1.0000 20 chr12:113772251-11377227 1.0000 20 chr7:21985666-21985686 1.0000 20 chr6:149790079-149790099 1.0000 20 chrX:53024949-53024969 1.0000 20 chr12:41621645-41621665 1.0000 20 chr3:48700361-48700381 1.0000 20 chr14:35008845-35008865 1.0000 20 chr8:125672699-125672719 1.0000 20 chrX:48432723-48432743 1.0000 20 chr10:99078879-99078899 1.0000 20 chr17:27276580-27276600 1.0000 20 chr1:54518899-54518919 1.0000 20 chr1:175194482-175194502 1.0000 20 chr19:35739697-35739717 1.0000 20 chr14:97845664-97845684 1.0000 20 chr21:34863945-34863965 1.0000 20 chr6:30524327-30524347 1.0000 20 chr6:31172010-31172030 1.0000 20 chr22:18484432-18484452 1.0000 20 chr6:31465624-31465644 1.0000 20 chrX:119379111-119379131 1.0000 20 chr11:72525253-72525273 1.0000 20 chr3:169940031-169940051 1.0000 20 chr10:94003210-94003230 1.0000 20 chr6:139612003-139612023 1.0000 20 chr19:12917735-12917755 1.0000 20 chr3:5028585-5028605 1.0000 20 chr3:185827028-185827048 1.0000 20 chr4:13486152-13486172 1.0000 20 chr17:55541016-55541036 1.0000 20 chr2:75062534-75062554 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_FOXK2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/FOXK2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.228 C 0.277 G 0.26 T 0.235 Background letter frequencies (from file dataset with add-one prior applied): A 0.228 C 0.277 G 0.26 T 0.235 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RAWWKAAA MEME-1 width = 8 sites = 17 llr = 142 E-value = 1.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAWWKAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5a45:aaa pos.-specific C 1::::::: probability G 4::24::: matrix T ::636::: bits 2.1 * *** 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 ** **** (12.1 bits) 0.9 ** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATATAAA consensus G ATG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWWKAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:119077757-119077777 13 7.76e-06 TGTGTGCATC AATATAAA chr15:44958744-44958764 8 7.76e-06 GAGCATA AATATAAA TATAA chr8:79428402-79428422 9 1.63e-05 AAAGCATT AATAGAAA ATCA chr19:48621201-48621221 13 1.63e-05 AGTAAACAGA AATAGAAA chr5:173345078-173345098 8 4.07e-05 AGAGTAT AATTTAAA CTGGG chr5:180671304-180671324 11 4.07e-05 AACGATGGGC AATTTAAA AA chr14:92867183-92867203 9 5.05e-05 ATATGCAA GATAGAAA GAGC chr13:76112122-76112142 5 6.77e-05 AGCT AAAAGAAA ATTATTTT chr10:94003210-94003230 9 8.54e-05 GAGTTGTT GAAATAAA AGGG chr6:149790079-149790099 12 1.02e-04 AGAGTGTAAA AATGTAAA C chr8:95908017-95908037 1 1.02e-04 . AATGTAAA CACCACTCAG chr6:74171355-74171375 7 1.22e-04 AACTAG GAAAGAAA ATACAC chr14:39736436-39736456 6 1.68e-04 CTCGG GATGTAAA GTATAAC chr7:104909652-104909672 2 1.68e-04 T GAATTAAA TATACTAGAT chrX:43513992-43514012 12 2.08e-04 TAAAACTAAA GAATGAAA G chr12:56615225-56615245 11 2.37e-04 AATCATTGCC CATTTAAA CA chr12:12816850-12816870 7 2.67e-04 ACCTCA CAAAGAAA CATTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWWKAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:119077757-119077777 7.8e-06 12_[+1] chr15:44958744-44958764 7.8e-06 7_[+1]_5 chr8:79428402-79428422 1.6e-05 8_[+1]_4 chr19:48621201-48621221 1.6e-05 12_[+1] chr5:173345078-173345098 4.1e-05 7_[+1]_5 chr5:180671304-180671324 4.1e-05 10_[+1]_2 chr14:92867183-92867203 5e-05 8_[+1]_4 chr13:76112122-76112142 6.8e-05 4_[+1]_8 chr10:94003210-94003230 8.5e-05 8_[+1]_4 chr6:149790079-149790099 0.0001 11_[+1]_1 chr8:95908017-95908037 0.0001 [+1]_12 chr6:74171355-74171375 0.00012 6_[+1]_6 chr14:39736436-39736456 0.00017 5_[+1]_7 chr7:104909652-104909672 0.00017 1_[+1]_11 chrX:43513992-43514012 0.00021 11_[+1]_1 chr12:56615225-56615245 0.00024 10_[+1]_2 chr12:12816850-12816870 0.00027 6_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWWKAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAWWKAAA width=8 seqs=17 chrX:119077757-119077777 ( 13) AATATAAA 1 chr15:44958744-44958764 ( 8) AATATAAA 1 chr8:79428402-79428422 ( 9) AATAGAAA 1 chr19:48621201-48621221 ( 13) AATAGAAA 1 chr5:173345078-173345098 ( 8) AATTTAAA 1 chr5:180671304-180671324 ( 11) AATTTAAA 1 chr14:92867183-92867203 ( 9) GATAGAAA 1 chr13:76112122-76112142 ( 5) AAAAGAAA 1 chr10:94003210-94003230 ( 9) GAAATAAA 1 chr6:149790079-149790099 ( 12) AATGTAAA 1 chr8:95908017-95908037 ( 1) AATGTAAA 1 chr6:74171355-74171375 ( 7) GAAAGAAA 1 chr14:39736436-39736456 ( 6) GATGTAAA 1 chr7:104909652-104909672 ( 2) GAATTAAA 1 chrX:43513992-43514012 ( 12) GAATGAAA 1 chr12:56615225-56615245 ( 11) CATTTAAA 1 chr12:12816850-12816870 ( 7) CAAAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWWKAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.94083 E= 1.4e-003 122 -123 44 -1073 213 -1073 -1073 -1073 63 -1073 -1073 146 122 -1073 -56 32 -1073 -1073 66 132 213 -1073 -1073 -1073 213 -1073 -1073 -1073 213 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWWKAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.4e-003 0.529412 0.117647 0.352941 0.000000 1.000000 0.000000 0.000000 0.000000 0.352941 0.000000 0.000000 0.647059 0.529412 0.000000 0.176471 0.294118 0.000000 0.000000 0.411765 0.588235 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAWWKAAA MEME-1 regular expression -------------------------------------------------------------------------------- [AG]A[TA][AT][TG]AAA -------------------------------------------------------------------------------- Time 3.20 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTAAACA MEME-2 width = 8 sites = 5 llr = 50 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTAAACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8::aaa:a pos.-specific C :2::::8: probability G :8::::2: matrix T 2:a::::: bits 2.1 **** * 1.9 **** * 1.7 **** * 1.5 * **** * Relative 1.3 ****** * Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTAAACA consensus TC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTAAACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:48621201-48621221 3 1.04e-05 GA AGTAAACA GAAATAGAAA chr8:94916655-94916675 3 1.04e-05 TT AGTAAACA CCATTGTTCA chr14:97845664-97845684 2 4.21e-05 c agtaaaga ttcttgcctg chrX:47077932-47077952 9 4.21e-05 AACTGAGT ACTAAACA GCCT chr4:90032280-90032300 11 4.21e-05 GGCTGCTGTT TGTAAACA CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTAAACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:48621201-48621221 1e-05 2_[+2]_10 chr8:94916655-94916675 1e-05 2_[+2]_10 chr14:97845664-97845684 4.2e-05 1_[+2]_11 chrX:47077932-47077952 4.2e-05 8_[+2]_4 chr4:90032280-90032300 4.2e-05 10_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTAAACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTAAACA width=8 seqs=5 chr19:48621201-48621221 ( 3) AGTAAACA 1 chr8:94916655-94916675 ( 3) AGTAAACA 1 chr14:97845664-97845684 ( 2) AGTAAAGA 1 chrX:47077932-47077952 ( 9) ACTAAACA 1 chr4:90032280-90032300 ( 11) TGTAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTAAACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 1.4e+003 181 -897 -897 -23 -897 -47 162 -897 -897 -897 -897 209 213 -897 -897 -897 213 -897 -897 -897 213 -897 -897 -897 -897 153 -38 -897 213 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTAAACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.4e+003 0.800000 0.000000 0.000000 0.200000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTAAACA MEME-2 regular expression -------------------------------------------------------------------------------- [AT][GC]TAAA[CG]A -------------------------------------------------------------------------------- Time 4.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGCGGG MEME-3 width = 8 sites = 11 llr = 92 E-value = 4.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGCGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C :9::8:32 probability G a:a8:a78 matrix T :1::2::: bits 2.1 1.9 * * * 1.7 * * * 1.5 *** * Relative 1.3 ****** * Entropy 1.1 ******** (12.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCGGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:35739697-35739717 3 2.37e-05 CC GCGGCGGG TCAAGCACCT chr1:36621441-36621461 12 2.37e-05 CCCAGTCCCC GCGGCGGG T chr7:21985666-21985686 13 4.90e-05 GTCTTCGCAG GCGGCGCG chr2:86947279-86947299 13 4.90e-05 CATTAGAGTG GCGGCGCG chr3:13690078-13690098 4 6.91e-05 GGT GCGGTGGG AGCAGAGGC chr11:911172-911192 8 6.91e-05 GAACCGC GCGGTGGG CTCCG chr2:87303658-87303678 1 8.98e-05 . GCGACGGG CGCCCACACG chr1:11539053-11539073 11 1.15e-04 GATTCAAGGC GCGGCGGC GC chr11:45921504-45921524 2 1.15e-04 G GCGGCGGC CTCGCGCTTC chr2:231730808-231730828 8 1.35e-04 AGAACGC GTGGCGGG CAGGG chrX:47050139-47050159 9 1.79e-04 GGGCACCA GCGACGCG GGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35739697-35739717 2.4e-05 2_[+3]_10 chr1:36621441-36621461 2.4e-05 11_[+3]_1 chr7:21985666-21985686 4.9e-05 12_[+3] chr2:86947279-86947299 4.9e-05 12_[+3] chr3:13690078-13690098 6.9e-05 3_[+3]_9 chr11:911172-911192 6.9e-05 7_[+3]_5 chr2:87303658-87303678 9e-05 [+3]_12 chr1:11539053-11539073 0.00012 10_[+3]_2 chr11:45921504-45921524 0.00012 1_[+3]_11 chr2:231730808-231730828 0.00014 7_[+3]_5 chrX:47050139-47050159 0.00018 8_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGCGGG width=8 seqs=11 chr19:35739697-35739717 ( 3) GCGGCGGG 1 chr1:36621441-36621461 ( 12) GCGGCGGG 1 chr7:21985666-21985686 ( 13) GCGGCGCG 1 chr2:86947279-86947299 ( 13) GCGGCGCG 1 chr3:13690078-13690098 ( 4) GCGGTGGG 1 chr11:911172-911192 ( 8) GCGGTGGG 1 chr2:87303658-87303678 ( 1) GCGACGGG 1 chr1:11539053-11539073 ( 11) GCGGCGGC 1 chr11:45921504-45921524 ( 2) GCGGCGGC 1 chr2:231730808-231730828 ( 8) GTGGCGGG 1 chrX:47050139-47050159 ( 9) GCGACGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.55806 E= 4.4e+003 -1010 -1010 194 -1010 -1010 171 -1010 -137 -1010 -1010 194 -1010 -32 -1010 165 -1010 -1010 156 -1010 -37 -1010 -1010 194 -1010 -1010 -2 148 -1010 -1010 -61 165 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.181818 0.818182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCGGG MEME-3 regular expression -------------------------------------------------------------------------------- GCGGCG[GC]G -------------------------------------------------------------------------------- Time 5.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CASAATGG MEME-4 width = 8 sites = 7 llr = 64 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASAATGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :9:aa::: pos.-specific C a:3::::: probability G :16::3aa matrix T ::1::7:: bits 2.1 ** 1.9 * ** ** 1.7 * ** ** 1.5 ** ** ** Relative 1.3 ** ***** Entropy 1.1 ** ***** (13.3 bits) 0.9 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGAATGG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAATGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:112201585-11220160 1 1.36e-05 . CAGAATGG AGGTGGAGCA chr17:7743429-7743449 9 1.36e-05 CCACTCTT CAGAATGG TCCA chr11:57416776-57416796 10 2.80e-05 ACACCTGCT CACAATGG ATT chr19:42927414-42927434 2 2.80e-05 T CACAATGG ATCATCCCGT chr1:1677861-1677881 5 4.30e-05 AAGG CAGAAGGG GGGGGAAC chr11:57103078-57103098 13 5.53e-05 CCCCGCCCCA CATAATGG chr1:54518899-54518919 7 1.34e-04 TTTTCT CGGAAGGG TTTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAATGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:112201585-11220160 1.4e-05 [+4]_12 chr17:7743429-7743449 1.4e-05 8_[+4]_4 chr11:57416776-57416796 2.8e-05 9_[+4]_3 chr19:42927414-42927434 2.8e-05 1_[+4]_11 chr1:1677861-1677881 4.3e-05 4_[+4]_8 chr11:57103078-57103098 5.5e-05 12_[+4] chr1:54518899-54518919 0.00013 6_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAATGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASAATGG width=8 seqs=7 chr10:112201585-11220160 ( 1) CAGAATGG 1 chr17:7743429-7743449 ( 9) CAGAATGG 1 chr11:57416776-57416796 ( 10) CACAATGG 1 chr19:42927414-42927434 ( 2) CACAATGG 1 chr1:1677861-1677881 ( 5) CAGAAGGG 1 chr11:57103078-57103098 ( 13) CATAATGG 1 chr1:54518899-54518919 ( 7) CGGAAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAATGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.46255 E= 5.1e+003 -945 185 -945 -945 191 -945 -86 -945 -945 5 113 -72 213 -945 -945 -945 213 -945 -945 -945 -945 -945 13 160 -945 -945 194 -945 -945 -945 194 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAATGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 5.1e+003 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.285714 0.571429 0.142857 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAATGG MEME-4 regular expression -------------------------------------------------------------------------------- CA[GC]AA[TG]GG -------------------------------------------------------------------------------- Time 6.30 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAACYAA MEME-5 width = 8 sites = 2 llr = 22 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACYAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaaa::aa pos.-specific C ::::a5:: probability G :::::::: matrix T :::::5:: bits 2.1 **** ** 1.9 ***** ** 1.7 ***** ** 1.5 ***** ** Relative 1.3 ***** ** Entropy 1.1 ******** (15.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAACCAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACYAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:43513992-43514012 3 9.14e-06 TT AAAACTAA AGAATGAAAG chr1:161379783-161379803 9 1.99e-05 tcagaacc aaaaccaa agtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACYAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:43513992-43514012 9.1e-06 2_[+5]_10 chr1:161379783-161379803 2e-05 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACYAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACYAA width=8 seqs=2 chrX:43513992-43514012 ( 3) AAAACTAA 1 chr1:161379783-161379803 ( 9) AAAACCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACYAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 6.2e+003 213 -765 -765 -765 213 -765 -765 -765 213 -765 -765 -765 213 -765 -765 -765 -765 185 -765 -765 -765 85 -765 108 213 -765 -765 -765 213 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACYAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.2e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACYAA MEME-5 regular expression -------------------------------------------------------------------------------- AAAAC[CT]AA -------------------------------------------------------------------------------- Time 7.05 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:133862639-133862659 9.50e-01 20 chr22:36635644-36635664 2.95e-01 20 chr15:44975634-44975654 9.88e-01 20 chr2:97590143-97590163 6.10e-01 20 chr2:87303658-87303678 6.35e-02 [+3(8.98e-05)]_12 chr3:160389218-160389238 8.13e-01 20 chr10:71712688-71712708 6.67e-01 20 chr16:75682602-75682622 1.00e+00 20 chr11:57103078-57103098 4.34e-02 12_[+4(5.53e-05)] chr7:44078928-44078948 4.89e-01 20 chr1:26437711-26437731 3.78e-01 20 chr1:204283546-204283566 8.09e-01 20 chr16:70100023-70100043 3.14e-02 20 chr6:160114507-160114527 9.96e-01 20 chr6:35231466-35231486 9.99e-01 20 chr3:129813251-129813271 8.80e-01 20 chr18:46472974-46472994 3.66e-01 20 chr3:111578414-111578434 5.33e-01 20 chrX:49022877-49022897 9.56e-01 20 chrX:43513992-43514012 3.35e-07 2_[+5(9.14e-06)]_10 chrX:48858068-48858088 9.27e-01 20 chr12:56224477-56224497 4.51e-01 20 chr8:17013359-17013379 1.33e-01 20 chr19:42927414-42927434 2.02e-02 1_[+4(2.80e-05)]_11 chr3:160473073-160473093 9.51e-01 20 chr7:2595257-2595277 6.43e-01 20 chr8:38124757-38124777 7.49e-01 20 chr3:159647452-159647472 5.92e-02 20 chr1:84464967-84464987 4.07e-01 20 chr15:44958744-44958764 2.09e-04 7_[+1(7.76e-06)]_5 chr11:129150116-12915013 4.38e-02 20 chr6:148663826-148663846 1.00e+00 20 chr1:24235458-24235478 7.92e-01 20 chr5:180671304-180671324 1.23e-04 10_[+1(4.07e-05)]_2 chr6:150325844-150325864 9.67e-01 20 chr20:19884030-19884050 8.17e-01 20 chr5:150284698-150284718 4.86e-01 20 chr21:38629493-38629513 9.67e-02 20 chr1:116549379-116549399 9.79e-01 20 chr19:50167683-50167703 5.79e-01 20 chr11:47290783-47290803 6.52e-01 20 chr19:49653752-49653772 9.41e-01 20 chr6:153296686-153296706 1.01e-01 20 chr11:64683886-64683906 2.93e-01 20 chr16:88522525-88522545 9.99e-01 20 chrX:47880834-47880854 1.97e-01 20 chr1:156119539-156119559 1.63e-01 20 chr17:40439516-40439536 2.36e-01 20 chr16:15730466-15730486 5.38e-01 20 chr13:115078893-11507891 3.41e-01 20 chr11:34460834-34460854 6.38e-01 20 chr7:99964640-99964660 1.57e-01 20 chr22:46984487-46984507 2.32e-01 20 chr6:83073358-83073378 2.15e-01 20 chr7:16685615-16685635 7.95e-01 20 chr8:107669925-107669945 5.81e-01 20 chr2:231730808-231730828 7.17e-02 20 chr17:7743429-7743449 1.88e-02 8_[+4(1.36e-05)]_4 chr2:86947279-86947299 6.40e-03 12_[+3(4.90e-05)] chr16:15736787-15736807 6.14e-01 20 chr9:135285434-135285454 8.96e-01 20 chr22:24129751-24129771 5.91e-01 20 chr11:9594429-9594449 6.61e-01 20 chrX:129304824-129304844 8.72e-01 20 chr14:52118285-52118305 8.03e-01 20 chr6:96753068-96753088 5.13e-02 20 chr10:115720645-11572066 9.92e-01 20 chr19:49649592-49649612 4.46e-01 20 chr16:85260348-85260368 6.15e-01 20 chr17:7343925-7343945 9.67e-01 20 chr3:79068782-79068802 8.66e-01 20 chr11:45921504-45921524 1.84e-01 20 chr3:184374926-184374946 3.37e-02 20 chr8:107282288-107282308 9.37e-01 20 chr12:3936788-3936808 2.01e-01 20 chr11:111749540-11174956 4.10e-01 20 chr17:36955678-36955698 1.80e-01 20 chr16:67694539-67694559 6.66e-01 20 chr21:44394228-44394248 6.23e-01 20 chr19:42721307-42721327 7.49e-01 20 chr11:911172-911192 7.47e-02 7_[+3(6.91e-05)]_5 chr1:153518418-153518438 2.57e-01 20 chr19:40791052-40791072 7.41e-01 20 chr1:14925023-14925043 9.92e-01 20 chr1:1677861-1677881 1.51e-02 4_[+4(4.30e-05)]_8 chr1:6550714-6550734 7.35e-01 20 chrX:19002658-19002678 1.86e-01 20 chr3:13040889-13040909 7.73e-01 20 chr6:32121706-32121726 9.92e-01 20 chr7:66460681-66460701 3.18e-01 20 chr16:29973147-29973167 7.49e-01 20 chr2:87303857-87303877 1.78e-01 20 chr6:167372919-167372939 1.00e+00 20 chrX:118827282-118827302 1.15e-01 20 chr3:51533505-51533525 5.01e-01 20 chr12:56615225-56615245 6.98e-03 20 chr2:120301848-120301868 7.50e-01 20 chr1:200860521-200860541 8.98e-01 20 chr13:53029237-53029257 2.90e-01 20 chr19:44139416-44139436 1.00e+00 20 chr7:104909652-104909672 6.48e-03 20 chr10:112201585-11220160 3.79e-03 [+4(1.36e-05)]_12 chr7:92219270-92219290 9.33e-01 20 chrX:48858800-48858820 4.00e-01 20 chr8:94916655-94916675 7.05e-04 2_[+2(1.04e-05)]_10 chr7:99724892-99724912 3.59e-01 20 chr22:18539309-18539329 3.02e-01 20 chrX:48937547-48937567 9.51e-01 20 chr12:106696409-10669642 9.55e-01 20 chr2:74007264-74007284 4.46e-01 20 chr2:86790208-86790228 9.90e-01 20 chr16:15068702-15068722 8.88e-01 20 chr12:113623394-11362341 8.74e-01 20 chr1:19923039-19923059 7.10e-01 20 chr11:66034881-66034901 7.23e-01 20 chr5:173345078-173345098 3.22e-03 7_[+1(4.07e-05)]_5 chr1:36489258-36489278 6.00e-01 20 chrX:118708450-118708470 1.00e+00 20 chr5:41864199-41864219 6.06e-02 20 chrX:47225562-47225582 1.00e+00 20 chr2:10550508-10550528 9.04e-01 20 chr19:42807069-42807089 6.99e-01 20 chr3:3670734-3670754 9.27e-02 20 chr17:58042286-58042306 9.57e-01 20 chr9:91955439-91955459 9.83e-01 20 chr7:107204244-107204264 7.39e-01 20 chrX:47420787-47420807 5.98e-01 20 chrX:48595998-48596018 9.09e-01 20 chr20:62580730-62580750 2.09e-01 20 chr19:49141727-49141747 9.32e-01 20 chr19:48621201-48621221 7.42e-06 2_[+2(1.04e-05)]_2_[+1(1.63e-05)] chr17:36453203-36453223 6.04e-01 20 chr15:48624193-48624213 3.08e-01 20 chrX:49020417-49020437 9.29e-01 20 chr1:208037374-208037394 9.88e-01 20 chr18:23670711-23670731 8.12e-01 20 chr11:57416776-57416796 1.78e-02 9_[+4(2.80e-05)]_3 chr14:56046699-56046719 1.00e+00 20 chr5:169724856-169724876 5.81e-01 20 chr9:130538802-130538822 5.74e-01 20 chr14:99727674-99727694 4.55e-01 20 chr10:116127117-11612713 8.75e-01 20 chrX:48755378-48755398 1.00e+00 20 chr8:356955-356975 3.60e-01 20 chr12:21138544-21138564 1.00e+00 20 chr1:204477050-204477070 3.97e-01 20 chr4:90032280-90032300 2.10e-02 10_[+2(4.21e-05)]_2 chr14:22984648-22984668 3.84e-01 20 chr8:124553522-124553542 9.63e-01 20 chr9:34637908-34637928 7.09e-02 20 chr1:167191644-167191664 7.27e-01 20 chr1:36621441-36621461 6.98e-02 11_[+3(2.37e-05)]_1 chrX:119077757-119077777 1.87e-03 12_[+1(7.76e-06)] chr1:1624440-1624460 3.14e-01 20 chr20:41182152-41182172 1.00e+00 20 chr17:58428600-58428620 9.46e-01 20 chr1:40283064-40283084 5.69e-01 20 chr8:17941746-17941766 2.25e-01 20 chr16:788254-788274 3.46e-01 20 chrX:47050139-47050159 7.05e-02 20 chr7:100887732-100887752 3.39e-01 20 chr18:658236-658256 9.22e-01 20 chrX:47479277-47479297 5.08e-01 20 chr8:95908017-95908037 1.97e-04 2_[+2(4.21e-05)]_10 chr16:89753892-89753912 4.59e-01 20 chr2:217082223-217082243 1.00e+00 20 chr17:77774561-77774581 9.94e-01 20 chr9:126703000-126703020 2.51e-01 20 chr7:102920624-102920644 9.47e-01 20 chr3:187463407-187463427 9.77e-01 20 chr3:194406484-194406504 1.73e-01 20 chr12:50794395-50794415 9.01e-01 20 chr22:26690756-26690776 1.00e+00 20 chr11:129872547-12987256 8.93e-01 20 chr13:76112122-76112142 2.41e-03 4_[+1(6.77e-05)]_8 chr3:42054302-42054322 9.18e-01 20 chr6:15586341-15586361 2.74e-01 20 chr14:39736436-39736456 2.25e-03 20 chr2:24943452-24943472 2.31e-01 20 chr3:13690078-13690098 7.58e-02 3_[+3(6.91e-05)]_9 chr6:31670879-31670899 9.63e-01 20 chr4:77870776-77870796 9.98e-01 20 chr19:10443721-10443741 7.84e-01 20 chr2:208387934-208387954 7.60e-05 6_[+5(6.28e-05)]_6 chr1:43609306-43609326 3.30e-01 20 chr22:39052529-39052549 9.67e-01 20 chr1:6052181-6052201 1.00e+00 20 chr10:99094602-99094622 8.08e-01 20 chr5:176328871-176328891 9.90e-01 20 chr7:107384055-107384075 8.94e-01 20 chr14:92867183-92867203 7.17e-03 8_[+1(5.05e-05)]_4 chrX:47077932-47077952 4.56e-03 8_[+2(4.21e-05)]_4 chr10:116286784-11628680 9.87e-02 20 chr1:161379783-161379803 2.36e-03 8_[+5(1.99e-05)]_4 chr20:2633165-2633185 2.62e-01 20 chr6:74171355-74171375 2.04e-03 20 chr1:9970779-9970799 9.89e-01 20 chr1:38231976-38231996 5.80e-01 20 chr19:10908380-10908400 6.46e-01 20 chr8:79428402-79428422 3.25e-03 8_[+1(1.63e-05)]_4 chr7:140396375-140396395 2.76e-01 20 chr19:36869945-36869965 5.36e-01 20 chr12:12816850-12816870 1.57e-03 20 chr22:39541800-39541820 5.81e-01 20 chr7:43909143-43909163 7.31e-01 20 chr1:11539053-11539073 3.52e-02 20 chr18:3449124-3449144 3.71e-01 20 chrX:53449295-53449315 7.89e-01 20 chr2:231070019-231070039 1.00e+00 20 chr3:9438453-9438473 4.29e-01 20 chr9:137000946-137000966 6.07e-01 20 chr19:49653042-49653062 3.81e-01 20 chr9:6757219-6757239 9.34e-01 20 chr14:23067239-23067259 6.92e-01 20 chr6:149794445-149794465 1.00e+00 20 chr19:30335335-30335355 7.86e-01 20 chr9:100263672-100263692 9.01e-01 20 chr17:31187296-31187316 1.00e+00 20 chr13:30989872-30989892 6.97e-01 20 chr12:113772251-11377227 2.68e-01 20 chr7:21985666-21985686 5.22e-02 12_[+3(4.90e-05)] chr6:149790079-149790099 1.69e-04 20 chrX:53024949-53024969 4.26e-01 20 chr12:41621645-41621665 1.17e-01 20 chr3:48700361-48700381 1.29e-01 20 chr14:35008845-35008865 9.30e-01 20 chr8:125672699-125672719 9.86e-01 20 chrX:48432723-48432743 9.55e-01 20 chr10:99078879-99078899 7.30e-02 20 chr17:27276580-27276600 2.30e-01 20 chr1:54518899-54518919 1.38e-01 20 chr1:175194482-175194502 3.86e-02 20 chr19:35739697-35739717 3.71e-02 2_[+3(2.37e-05)]_10 chr14:97845664-97845684 3.33e-02 1_[+2(4.21e-05)]_11 chr21:34863945-34863965 1.23e-01 20 chr6:30524327-30524347 4.78e-01 20 chr6:31172010-31172030 9.62e-01 20 chr22:18484432-18484452 2.69e-01 20 chr6:31465624-31465644 3.58e-01 20 chrX:119379111-119379131 1.95e-01 20 chr11:72525253-72525273 4.70e-01 20 chr3:169940031-169940051 7.84e-01 20 chr10:94003210-94003230 2.27e-03 8_[+1(8.54e-05)]_4 chr6:139612003-139612023 9.91e-01 20 chr19:12917735-12917755 1.30e-01 20 chr3:5028585-5028605 9.22e-01 20 chr3:185827028-185827048 5.42e-02 20 chr4:13486152-13486172 5.05e-02 20 chr17:55541016-55541036 4.17e-01 20 chr2:75062534-75062554 6.47e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************