******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ETS1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:30908492-30908512 1.0000 20 chr9:131965219-131965239 1.0000 20 chr19:49479626-49479646 1.0000 20 chr19:48907050-48907070 1.0000 20 chr9:22038244-22038264 1.0000 20 chr17:40559712-40559732 1.0000 20 chr19:49148224-49148244 1.0000 20 chr1:154979452-154979472 1.0000 20 chr19:42463570-42463590 1.0000 20 chr1:224544473-224544493 1.0000 20 chr3:14166385-14166405 1.0000 20 chr10:111985630-11198565 1.0000 20 chr7:23610397-23610417 1.0000 20 chr19:55817025-55817045 1.0000 20 chr11:60681336-60681356 1.0000 20 chr11:46134714-46134734 1.0000 20 chr6:43215056-43215076 1.0000 20 chr19:44809229-44809249 1.0000 20 chr19:49224382-49224402 1.0000 20 chr19:49248641-49248661 1.0000 20 chr8:144699791-144699811 1.0000 20 chr9:97021519-97021539 1.0000 20 chr19:45988750-45988770 1.0000 20 chr14:78914991-78915011 1.0000 20 chr12:133532921-13353294 1.0000 20 chr16:58426753-58426773 1.0000 20 chr19:49310059-49310079 1.0000 20 chr19:507915-507935 1.0000 20 chr6:31866349-31866369 1.0000 20 chr19:45908776-45908796 1.0000 20 chr17:7094976-7094996 1.0000 20 chr19:52097778-52097798 1.0000 20 chr1:243418793-243418813 1.0000 20 chr1:2457704-2457724 1.0000 20 chr19:49416559-49416579 1.0000 20 chr17:7118445-7118465 1.0000 20 chr5:178286927-178286947 1.0000 20 chr15:74692427-74692447 1.0000 20 chr17:7358859-7358879 1.0000 20 chr16:68482625-68482645 1.0000 20 chr7:150689978-150689998 1.0000 20 chr16:30103290-30103310 1.0000 20 chr19:48833468-48833488 1.0000 20 chr19:48922717-48922737 1.0000 20 chr12:54582870-54582890 1.0000 20 chr9:115819025-115819045 1.0000 20 chr1:107599255-107599275 1.0000 20 chr19:54618743-54618763 1.0000 20 chr19:49013964-49013984 1.0000 20 chr10:5882401-5882421 1.0000 20 chr5:178157747-178157767 1.0000 20 chr12:751994-752014 1.0000 20 chr1:6673653-6673673 1.0000 20 chr20:62694399-62694419 1.0000 20 chr6:43597138-43597158 1.0000 20 chr3:183892429-183892449 1.0000 20 chr14:77787323-77787343 1.0000 20 chr2:232646325-232646345 1.0000 20 chr2:172543944-172543964 1.0000 20 chr8:82755042-82755062 1.0000 20 chr16:70473233-70473253 1.0000 20 chr19:58838319-58838339 1.0000 20 chr6:10147368-10147388 1.0000 20 chr1:45806162-45806182 1.0000 20 chr5:85913665-85913685 1.0000 20 chr19:48866463-48866483 1.0000 20 chr1:244816075-244816095 1.0000 20 chr19:49017259-49017279 1.0000 20 chr20:33735177-33735197 1.0000 20 chr22:38709539-38709559 1.0000 20 chr19:40315325-40315345 1.0000 20 chr18:9913600-9913620 1.0000 20 chr12:122985591-12298561 1.0000 20 chr2:170430430-170430450 1.0000 20 chr14:94373255-94373275 1.0000 20 chr10:104262625-10426264 1.0000 20 chr5:131526056-131526076 1.0000 20 chr19:36208471-36208491 1.0000 20 chr17:73780737-73780757 1.0000 20 chr6:42531636-42531656 1.0000 20 chr1:23695383-23695403 1.0000 20 chr22:29986080-29986100 1.0000 20 chr17:76250681-76250701 1.0000 20 chr16:15150047-15150067 1.0000 20 chr19:37178398-37178418 1.0000 20 chr7:150755117-150755137 1.0000 20 chr5:157286177-157286197 1.0000 20 chr1:47799926-47799946 1.0000 20 chr19:44617466-44617486 1.0000 20 chr1:1051596-1051616 1.0000 20 chr1:151584413-151584433 1.0000 20 chr19:57946569-57946589 1.0000 20 chr17:4634617-4634637 1.0000 20 chr12:861546-861566 1.0000 20 chr10:74870192-74870212 1.0000 20 chr5:173043768-173043788 1.0000 20 chr16:30934670-30934690 1.0000 20 chr19:38397769-38397789 1.0000 20 chr22:46684366-46684386 1.0000 20 chr4:104021009-104021029 1.0000 20 chr19:44507038-44507058 1.0000 20 chr13:41838016-41838036 1.0000 20 chr9:134955301-134955321 1.0000 20 chr16:67840621-67840641 1.0000 20 chr12:56710158-56710178 1.0000 20 chr19:2457021-2457041 1.0000 20 chr6:160883656-160883676 1.0000 20 chr1:155113017-155113037 1.0000 20 chr5:55008192-55008212 1.0000 20 chr12:110151349-11015136 1.0000 20 chr4:18023798-18023818 1.0000 20 chr19:47354325-47354345 1.0000 20 chr4:2420579-2420599 1.0000 20 chr19:44598454-44598474 1.0000 20 chr17:38083897-38083917 1.0000 20 chr1:54519179-54519199 1.0000 20 chr1:22110164-22110184 1.0000 20 chr20:47805052-47805072 1.0000 20 chr2:37193778-37193798 1.0000 20 chr3:46037337-46037357 1.0000 20 chr11:65488328-65488348 1.0000 20 chr16:686404-686424 1.0000 20 chr1:212856790-212856810 1.0000 20 chr18:46065338-46065358 1.0000 20 chr13:52188838-52188858 1.0000 20 chr16:46918173-46918193 1.0000 20 chr18:32923939-32923959 1.0000 20 chr19:50379901-50379921 1.0000 20 chr12:90274684-90274704 1.0000 20 chr19:49250518-49250538 1.0000 20 chr15:64386182-64386202 1.0000 20 chr16:67880728-67880748 1.0000 20 chr3:50397104-50397124 1.0000 20 chr9:138853288-138853308 1.0000 20 chr2:241075720-241075740 1.0000 20 chr12:104323553-10432357 1.0000 20 chr14:24701779-24701799 1.0000 20 chr8:52921158-52921178 1.0000 20 chr19:46366577-46366597 1.0000 20 chr14:82000489-82000509 1.0000 20 chr15:41099769-41099789 1.0000 20 chr13:50569837-50569857 1.0000 20 chr12:6741666-6741686 1.0000 20 chr7:140098335-140098355 1.0000 20 chr17:19912607-19912627 1.0000 20 chr19:2086733-2086753 1.0000 20 chr9:130548265-130548285 1.0000 20 chr2:197105079-197105099 1.0000 20 chr13:103451421-10345144 1.0000 20 chr1:155990749-155990769 1.0000 20 chr1:149871095-149871115 1.0000 20 chr19:49404506-49404526 1.0000 20 chr10:97055131-97055151 1.0000 20 chr10:72124435-72124455 1.0000 20 chr3:57741897-57741917 1.0000 20 chr15:75182351-75182371 1.0000 20 chr19:7616386-7616406 1.0000 20 chr16:69599785-69599805 1.0000 20 chr13:31736534-31736554 1.0000 20 chr1:115300176-115300196 1.0000 20 chr3:61235811-61235831 1.0000 20 chr16:577622-577642 1.0000 20 chr8:67525787-67525807 1.0000 20 chr9:130700154-130700174 1.0000 20 chr12:56323302-56323322 1.0000 20 chr11:72145673-72145693 1.0000 20 chr16:53468303-53468323 1.0000 20 chr9:102861375-102861395 1.0000 20 chr17:21117590-21117610 1.0000 20 chr16:4321922-4321942 1.0000 20 chr16:67700675-67700695 1.0000 20 chr11:64692087-64692107 1.0000 20 chr20:25677543-25677563 1.0000 20 chr8:145159807-145159827 1.0000 20 chr13:26827950-26827970 1.0000 20 chr17:3866936-3866956 1.0000 20 chr6:163148876-163148896 1.0000 20 chr17:71189117-71189137 1.0000 20 chr6:41703424-41703444 1.0000 20 chr19:49223953-49223973 1.0000 20 chr9:104161013-104161033 1.0000 20 chr12:6961680-6961700 1.0000 20 chr14:65569320-65569340 1.0000 20 chr1:153931183-153931203 1.0000 20 chr10:43048374-43048394 1.0000 20 chr19:49362040-49362060 1.0000 20 chr1:156024518-156024538 1.0000 20 chr2:86332731-86332751 1.0000 20 chr19:55629116-55629136 1.0000 20 chr1:182758813-182758833 1.0000 20 chr9:95640389-95640409 1.0000 20 chr12:88535996-88536016 1.0000 20 chr12:94071095-94071115 1.0000 20 chr11:3078728-3078748 1.0000 20 chr8:110346378-110346398 1.0000 20 chr20:48732545-48732565 1.0000 20 chr20:18477887-18477907 1.0000 20 chr7:128735491-128735511 1.0000 20 chr14:73494014-73494034 1.0000 20 chr6:110501331-110501351 1.0000 20 chr11:450246-450266 1.0000 20 chr2:38893018-38893038 1.0000 20 chr10:106098388-10609840 1.0000 20 chr11:82997464-82997484 1.0000 20 chr2:242448114-242448134 1.0000 20 chr19:49947113-49947133 1.0000 20 chr2:217277096-217277116 1.0000 20 chr3:51534197-51534217 1.0000 20 chr3:50388533-50388553 1.0000 20 chr3:47844602-47844622 1.0000 20 chr19:49469224-49469244 1.0000 20 chr13:41768748-41768768 1.0000 20 chr1:156542374-156542394 1.0000 20 chr10:38383197-38383217 1.0000 20 chr19:50836877-50836897 1.0000 20 chr16:84674950-84674970 1.0000 20 chr9:116341374-116341394 1.0000 20 chr3:47029428-47029448 1.0000 20 chr5:40756084-40756104 1.0000 20 chr4:102339397-102339417 1.0000 20 chr3:4534962-4534982 1.0000 20 chr19:44669159-44669179 1.0000 20 chr1:156737099-156737119 1.0000 20 chr1:205744631-205744651 1.0000 20 chr19:55690544-55690564 1.0000 20 chr11:111317380-11131740 1.0000 20 chr19:3435296-3435316 1.0000 20 chr19:15574738-15574758 1.0000 20 chr16:58718679-58718699 1.0000 20 chr19:2819802-2819822 1.0000 20 chr20:44634021-44634041 1.0000 20 chr18:60765914-60765934 1.0000 20 chr12:55378565-55378585 1.0000 20 chr19:37861907-37861927 1.0000 20 chr16:58664441-58664461 1.0000 20 chr17:76374709-76374729 1.0000 20 chr16:81779977-81779997 1.0000 20 chr7:135194986-135195006 1.0000 20 chr19:50163196-50163216 1.0000 20 chr10:26737779-26737799 1.0000 20 chr6:8064779-8064799 1.0000 20 chr13:41706974-41706994 1.0000 20 chr17:16439126-16439146 1.0000 20 chr16:87417701-87417721 1.0000 20 chr12:9102605-9102625 1.0000 20 chr11:77899753-77899773 1.0000 20 chr7:100888078-100888098 1.0000 20 chr22:20861820-20861840 1.0000 20 chr1:156474819-156474839 1.0000 20 chr16:19535107-19535127 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ETS1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ETS1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.189 C 0.314 G 0.311 T 0.185 Background letter frequencies (from file dataset with add-one prior applied): A 0.189 C 0.314 G 0.311 T 0.185 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RRACTACA MEME-1 width = 8 sites = 22 llr = 178 E-value = 9.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRACTACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 54a2:919 pos.-specific C :::81191 probability G 56::1::: matrix T ::::8::: bits 2.4 * 2.2 * 1.9 * * 1.7 * * * Relative 1.5 * * * Entropy 1.2 ****** (11.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGACTACA consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:115300176-115300196 8 7.24e-06 AGCAGCC AGACTACA GATCC chr18:32923939-32923959 12 7.24e-06 GCGGCCGGTG AGACTACA A chr16:686404-686424 9 1.16e-05 AAGCTGAT AAACTACA ACTC chr5:173043768-173043788 4 1.16e-05 GAG AAACTACA ACTCCCGGC chr3:4534962-4534982 10 2.35e-05 CCGCTACTT GGACTACA TTG chr16:577622-577642 9 2.35e-05 CCACCCGA GGACTACA ACTC chr6:10147368-10147388 9 2.35e-05 ctttgcaa ggactaca cctc chr16:70473233-70473253 3 2.35e-05 CA GGACTACA TCTCCCAGAA chr1:182758813-182758833 6 3.08e-05 GCGCA GAACTACA ACCCCCA chr19:49223953-49223973 6 3.08e-05 GATAA GAACTACA ACTCCCA chr7:128735491-128735511 7 8.28e-05 GAACAC AGAATAAA GTTTGC chr11:72145673-72145693 3 8.28e-05 GG AGAATAAA TAAACTACGT chr22:46684366-46684386 12 8.28e-05 AGCACAGCCG AGACCACA T chr22:20861820-20861840 1 1.04e-04 . AGACTCCA TTTCCCACAA chr2:38893018-38893038 2 1.50e-04 A AAACTACC ATTCCCAACA chr2:232646325-232646345 10 1.75e-04 GCACTCGGG GGACCACA GAT chr1:153931183-153931203 10 2.09e-04 GGAGGAAAC GGACTCCA CTT chr5:178286927-178286947 4 2.09e-04 CGT GGACTCCA TTTCCTAGA chr2:217277096-217277116 6 3.12e-04 ATCCC AGAAGACA CTGCAGC chr17:21117590-21117610 1 3.40e-04 . GAACTACC GTGCCCACAA chr19:50379901-50379921 3 3.40e-04 TC AAAAGACA TGGCGGCGCC chr6:160883656-160883676 10 3.40e-04 TTCTGCAGG AAACCAAA CCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:115300176-115300196 7.2e-06 7_[+1]_5 chr18:32923939-32923959 7.2e-06 11_[+1]_1 chr16:686404-686424 1.2e-05 8_[+1]_4 chr5:173043768-173043788 1.2e-05 3_[+1]_9 chr3:4534962-4534982 2.4e-05 9_[+1]_3 chr16:577622-577642 2.4e-05 8_[+1]_4 chr6:10147368-10147388 2.4e-05 8_[+1]_4 chr16:70473233-70473253 2.4e-05 2_[+1]_10 chr1:182758813-182758833 3.1e-05 5_[+1]_7 chr19:49223953-49223973 3.1e-05 5_[+1]_7 chr7:128735491-128735511 8.3e-05 6_[+1]_6 chr11:72145673-72145693 8.3e-05 2_[+1]_10 chr22:46684366-46684386 8.3e-05 11_[+1]_1 chr22:20861820-20861840 0.0001 [+1]_12 chr2:38893018-38893038 0.00015 1_[+1]_11 chr2:232646325-232646345 0.00017 9_[+1]_3 chr1:153931183-153931203 0.00021 9_[+1]_3 chr5:178286927-178286947 0.00021 3_[+1]_9 chr2:217277096-217277116 0.00031 5_[+1]_7 chr17:21117590-21117610 0.00034 [+1]_12 chr19:50379901-50379921 0.00034 2_[+1]_10 chr6:160883656-160883676 0.00034 9_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRACTACA width=8 seqs=22 chr1:115300176-115300196 ( 8) AGACTACA 1 chr18:32923939-32923959 ( 12) AGACTACA 1 chr16:686404-686424 ( 9) AAACTACA 1 chr5:173043768-173043788 ( 4) AAACTACA 1 chr3:4534962-4534982 ( 10) GGACTACA 1 chr16:577622-577642 ( 9) GGACTACA 1 chr6:10147368-10147388 ( 9) GGACTACA 1 chr16:70473233-70473253 ( 3) GGACTACA 1 chr1:182758813-182758833 ( 6) GAACTACA 1 chr19:49223953-49223973 ( 6) GAACTACA 1 chr7:128735491-128735511 ( 7) AGAATAAA 1 chr11:72145673-72145693 ( 3) AGAATAAA 1 chr22:46684366-46684386 ( 12) AGACCACA 1 chr22:20861820-20861840 ( 1) AGACTCCA 1 chr2:38893018-38893038 ( 2) AAACTACC 1 chr2:232646325-232646345 ( 10) GGACCACA 1 chr1:153931183-153931203 ( 10) GGACTCCA 1 chr5:178286927-178286947 ( 4) GGACTCCA 1 chr2:217277096-217277116 ( 6) AGAAGACA 1 chr17:21117590-21117610 ( 1) GAACTACC 1 chr19:50379901-50379921 ( 3) AAAAGACA 1 chr6:160883656-160883676 ( 10) AAACCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.55423 E= 9.5e-007 153 -1110 55 -1110 94 -1110 103 -1110 240 -1110 -1110 -1110 -6 138 -1110 -1110 -1110 -120 -177 206 219 -120 -1110 -1110 -47 146 -1110 -1110 226 -179 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 9.5e-007 0.545455 0.000000 0.454545 0.000000 0.363636 0.000000 0.636364 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.000000 0.136364 0.090909 0.772727 0.863636 0.136364 0.000000 0.000000 0.136364 0.863636 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRACTACA MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GA]ACTACA -------------------------------------------------------------------------------- Time 2.73 secs. ******************************************************************************** ******************************************************************************** MOTIF KTGTAGTT MEME-2 width = 8 sites = 17 llr = 144 E-value = 5.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTGTAGTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:::a:11 pos.-specific C :1:1::13 probability G 41a::9:: matrix T 48:9:196 bits 2.4 * 2.2 * 1.9 ** 1.7 *** * Relative 1.5 ***** Entropy 1.2 ****** (12.2 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTAGTT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTAGTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:41838016-41838036 2 3.96e-06 G TTGTAGTT TACCTTGCGG chr16:30934670-30934690 4 3.96e-06 TGT TTGTAGTT CCCGCTGTC chr17:4634617-4634637 2 3.96e-06 G TTGTAGTT CATCAAGCGG chr19:37861907-37861927 7 1.47e-05 TGGGAG ATGTAGTT CAACGA chr12:6961680-6961700 11 2.14e-05 ACTGTGGGCA TTGTAGTC AC chr13:31736534-31736554 11 3.27e-05 ATGCTGGGAT GTGTAGTC CT chr19:44617466-44617486 13 3.27e-05 ATTCTGGGAA GTGTAGTC chr19:46366577-46366597 2 3.96e-05 A ATGTAGTC CCTTCGGAGG chr20:48732545-48732565 7 5.93e-05 TGGGAG TTGTAGTA CGTCCC chr3:183892429-183892449 9 6.74e-05 GCTGGAAT GTGTATTT CTGG chr6:41703424-41703444 1 9.67e-05 . GCGTAGTT CTCGCTGCAG chr6:163148876-163148896 11 9.67e-05 TAGTTCTAAC GCGTAGTT TC chr9:97021519-97021539 7 9.67e-05 ACGGTA GGGTAGTT GCGCGC chr11:60681336-60681356 8 1.30e-04 GGAACAT TTGTAGCT CTAGA chr12:55378565-55378585 10 1.45e-04 CATCCACAC ATGTAGAT GCA chr19:36208471-36208491 7 1.68e-04 TGGGAG TGGTAGTC CACGCG chr12:88535996-88536016 4 1.91e-04 AGA GTGCAGTT CTGCCTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTAGTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:41838016-41838036 4e-06 1_[+2]_11 chr16:30934670-30934690 4e-06 3_[+2]_9 chr17:4634617-4634637 4e-06 1_[+2]_11 chr19:37861907-37861927 1.5e-05 6_[+2]_6 chr12:6961680-6961700 2.1e-05 10_[+2]_2 chr13:31736534-31736554 3.3e-05 10_[+2]_2 chr19:44617466-44617486 3.3e-05 12_[+2] chr19:46366577-46366597 4e-05 1_[+2]_11 chr20:48732545-48732565 5.9e-05 6_[+2]_6 chr3:183892429-183892449 6.7e-05 8_[+2]_4 chr6:41703424-41703444 9.7e-05 [+2]_12 chr6:163148876-163148896 9.7e-05 10_[+2]_2 chr9:97021519-97021539 9.7e-05 6_[+2]_6 chr11:60681336-60681356 0.00013 7_[+2]_5 chr12:55378565-55378585 0.00015 9_[+2]_3 chr19:36208471-36208491 0.00017 6_[+2]_6 chr12:88535996-88536016 0.00019 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTAGTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTGTAGTT width=8 seqs=17 chr13:41838016-41838036 ( 2) TTGTAGTT 1 chr16:30934670-30934690 ( 4) TTGTAGTT 1 chr17:4634617-4634637 ( 2) TTGTAGTT 1 chr19:37861907-37861927 ( 7) ATGTAGTT 1 chr12:6961680-6961700 ( 11) TTGTAGTC 1 chr13:31736534-31736554 ( 11) GTGTAGTC 1 chr19:44617466-44617486 ( 13) GTGTAGTC 1 chr19:46366577-46366597 ( 2) ATGTAGTC 1 chr20:48732545-48732565 ( 7) TTGTAGTA 1 chr3:183892429-183892449 ( 9) GTGTATTT 1 chr6:41703424-41703444 ( 1) GCGTAGTT 1 chr6:163148876-163148896 ( 11) GCGTAGTT 1 chr9:97021519-97021539 ( 7) GGGTAGTT 1 chr11:60681336-60681356 ( 8) TTGTAGCT 1 chr12:55378565-55378585 ( 10) ATGTAGAT 1 chr19:36208471-36208491 ( 7) TGGTAGTC 1 chr12:88535996-88536016 ( 4) GTGCAGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTAGTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 5.0e-004 -10 -1073 40 115 -1073 -142 -140 204 -1073 -1073 168 -1073 -1073 -241 -1073 234 240 -1073 -1073 -1073 -1073 -1073 160 -165 -168 -241 -1073 225 -168 -10 -1073 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTAGTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 5.0e-004 0.176471 0.000000 0.411765 0.411765 0.000000 0.117647 0.117647 0.764706 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.000000 0.941176 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.941176 0.058824 0.058824 0.058824 0.000000 0.882353 0.058824 0.294118 0.000000 0.647059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTAGTT MEME-2 regular expression -------------------------------------------------------------------------------- [GT]TGTAGT[TC] -------------------------------------------------------------------------------- Time 3.82 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTTCCTG MEME-3 width = 8 sites = 24 llr = 181 E-value = 1.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTTCCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6:2::::: pos.-specific C 28:1aa:1 probability G 21::::39 matrix T :189::7: bits 2.4 2.2 1.9 1.7 **** Relative 1.5 **** Entropy 1.2 ****** (10.9 bits) 1.0 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACTTCCTG consensus C A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:15574738-15574758 6 1.15e-05 CCACA ACTTCCTG TGTCTGT chr16:84674950-84674970 8 1.15e-05 AGAAGCC ACTTCCTG TCACC chr2:197105079-197105099 1 1.83e-05 . ATTTCCTG TTTCAGGCAA chr8:52921158-52921178 4 3.01e-05 GCC ACATCCTG TTCCAGCCC chr19:44669159-44669179 7 6.86e-05 GTAGGC ACTTCCGG CTCGAG chr11:64692087-64692107 8 6.86e-05 CCCCGGG CCTTCCTG ACGCA chr2:241075720-241075740 7 6.86e-05 AGGCTC ACTTCCGG CCTCAG chr20:33735177-33735197 12 6.86e-05 TCAGCCTCTC ACTTCCGG A chr3:47029428-47029448 8 8.76e-05 ACTCTGC GCTTCCTG CCCCA chr6:110501331-110501351 4 8.76e-05 CGC GCTTCCTG CCGCGCTGC chr5:131526056-131526076 9 8.76e-05 atcagctg gcttcctg ttag chr8:67525787-67525807 5 9.90e-05 AGCG AGTTCCTG CGCTCGCC chr12:6741666-6741686 2 1.11e-04 t acttcctc tgcttctgtg chr19:49416559-49416579 2 1.30e-04 A ACTCCCTG TTACTGTACC chr19:7616386-7616406 11 1.60e-04 GGGAAGCCTT CTTTCCTG AG chr19:45988750-45988770 5 1.60e-04 TCGT CTTTCCTG GACTCCTG chr10:26737779-26737799 5 1.99e-04 ACCC ACATCCGG CAAAATGT chr22:38709539-38709559 9 1.99e-04 CAGGAAGC ACATCCGG AGAG chr20:18477887-18477907 6 2.62e-04 CCGCG GCATCCTG GGAGTTG chr12:133532921-13353294 4 3.13e-04 TAC ACTTCCCG GGGGGCTCG chr17:16439126-16439146 9 3.93e-04 GAACACTG CGTTCCTG GGCC chr4:102339397-102339417 13 3.93e-04 GCAAAGAGCC ACATCCTC chr1:155113017-155113037 4 5.36e-04 AGT CCTCCCTG GTTCACGTT chr5:173043768-173043788 12 5.36e-04 AGAAACTACA ACTCCCGG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:15574738-15574758 1.2e-05 5_[+3]_7 chr16:84674950-84674970 1.2e-05 7_[+3]_5 chr2:197105079-197105099 1.8e-05 [+3]_12 chr8:52921158-52921178 3e-05 3_[+3]_9 chr19:44669159-44669179 6.9e-05 6_[+3]_6 chr11:64692087-64692107 6.9e-05 7_[+3]_5 chr2:241075720-241075740 6.9e-05 6_[+3]_6 chr20:33735177-33735197 6.9e-05 11_[+3]_1 chr3:47029428-47029448 8.8e-05 7_[+3]_5 chr6:110501331-110501351 8.8e-05 3_[+3]_9 chr5:131526056-131526076 8.8e-05 8_[+3]_4 chr8:67525787-67525807 9.9e-05 4_[+3]_8 chr12:6741666-6741686 0.00011 1_[+3]_11 chr19:49416559-49416579 0.00013 1_[+3]_11 chr19:7616386-7616406 0.00016 10_[+3]_2 chr19:45988750-45988770 0.00016 4_[+3]_8 chr10:26737779-26737799 0.0002 4_[+3]_8 chr22:38709539-38709559 0.0002 8_[+3]_4 chr20:18477887-18477907 0.00026 5_[+3]_7 chr12:133532921-13353294 0.00031 3_[+3]_9 chr17:16439126-16439146 0.00039 8_[+3]_4 chr4:102339397-102339417 0.00039 12_[+3] chr1:155113017-155113037 0.00054 3_[+3]_9 chr5:173043768-173043788 0.00054 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTTCCTG width=8 seqs=24 chr19:15574738-15574758 ( 6) ACTTCCTG 1 chr16:84674950-84674970 ( 8) ACTTCCTG 1 chr2:197105079-197105099 ( 1) ATTTCCTG 1 chr8:52921158-52921178 ( 4) ACATCCTG 1 chr19:44669159-44669179 ( 7) ACTTCCGG 1 chr11:64692087-64692107 ( 8) CCTTCCTG 1 chr2:241075720-241075740 ( 7) ACTTCCGG 1 chr20:33735177-33735197 ( 12) ACTTCCGG 1 chr3:47029428-47029448 ( 8) GCTTCCTG 1 chr6:110501331-110501351 ( 4) GCTTCCTG 1 chr5:131526056-131526076 ( 9) GCTTCCTG 1 chr8:67525787-67525807 ( 5) AGTTCCTG 1 chr12:6741666-6741686 ( 2) ACTTCCTC 1 chr19:49416559-49416579 ( 2) ACTCCCTG 1 chr19:7616386-7616406 ( 11) CTTTCCTG 1 chr19:45988750-45988770 ( 5) CTTTCCTG 1 chr10:26737779-26737799 ( 5) ACATCCGG 1 chr22:38709539-38709559 ( 9) ACATCCGG 1 chr20:18477887-18477907 ( 6) GCATCCTG 1 chr12:133532921-13353294 ( 4) ACTTCCCG 1 chr17:16439126-16439146 ( 9) CGTTCCTG 1 chr4:102339397-102339417 ( 13) ACATCCTC 1 chr1:155113017-155113037 ( 4) CCTCCCTG 1 chr5:173043768-173043788 ( 12) ACTCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.52089 E= 1.4e-003 172 -59 -90 -1123 -1123 133 -190 -57 14 -1123 -1123 209 -1123 -133 -1123 224 -1123 167 -1123 -1123 -1123 167 -1123 -1123 -1123 -291 -32 193 -1123 -191 156 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.4e-003 0.625000 0.208333 0.166667 0.000000 0.000000 0.791667 0.083333 0.125000 0.208333 0.000000 0.000000 0.791667 0.000000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.041667 0.250000 0.708333 0.000000 0.083333 0.916667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTTCCTG MEME-3 regular expression -------------------------------------------------------------------------------- [AC]C[TA]TCC[TG]G -------------------------------------------------------------------------------- Time 5.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAGTGG MEME-4 width = 8 sites = 10 llr = 92 E-value = 1.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAGTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:a7:1:: pos.-specific C :::::::: probability G 9a::a:a8 matrix T :::3:9:2 bits 2.4 * 2.2 * 1.9 * * 1.7 ** *** Relative 1.5 ****** Entropy 1.2 ******** (13.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGTGG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:212856790-212856810 13 1.92e-05 ATTGCGGACA GGAAGTGG chr16:15150047-15150067 12 1.92e-05 TCCAAAGCCA GGAAGTGG C chr12:751994-752014 8 1.92e-05 GGATGCG GGAAGTGG GCTCG chr1:156474819-156474839 5 3.80e-05 GGCA GGATGTGG TGGCAGCT chr13:50569837-50569857 1 3.80e-05 . GGATGTGG CCAGGGGCTT chr12:90274684-90274704 13 3.80e-05 aagcctcaca ggatgtgg chr10:74870192-74870212 10 4.95e-05 AGGATTCTG GGAAGTGT GGC chr5:157286177-157286197 1 4.95e-05 . GGAAGTGT CCGACTTTCC chr19:55629116-55629136 12 6.12e-05 GTCCATTAGC AGAAGTGG C chr9:130548265-130548285 9 9.20e-05 cggcgggc ggaagagg cggg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:212856790-212856810 1.9e-05 12_[+4] chr16:15150047-15150067 1.9e-05 11_[+4]_1 chr12:751994-752014 1.9e-05 7_[+4]_5 chr1:156474819-156474839 3.8e-05 4_[+4]_8 chr13:50569837-50569857 3.8e-05 [+4]_12 chr12:90274684-90274704 3.8e-05 12_[+4] chr10:74870192-74870212 4.9e-05 9_[+4]_3 chr5:157286177-157286197 4.9e-05 [+4]_12 chr19:55629116-55629136 6.1e-05 11_[+4]_1 chr9:130548265-130548285 9.2e-05 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAGTGG width=8 seqs=10 chr1:212856790-212856810 ( 13) GGAAGTGG 1 chr16:15150047-15150067 ( 12) GGAAGTGG 1 chr12:751994-752014 ( 8) GGAAGTGG 1 chr1:156474819-156474839 ( 5) GGATGTGG 1 chr13:50569837-50569857 ( 1) GGATGTGG 1 chr12:90274684-90274704 ( 13) GGATGTGG 1 chr10:74870192-74870212 ( 10) GGAAGTGT 1 chr5:157286177-157286197 ( 1) GGAAGTGT 1 chr19:55629116-55629136 ( 12) AGAAGTGG 1 chr9:130548265-130548285 ( 9) GGAAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 1.6e+000 -92 -997 153 -997 -997 -997 168 -997 240 -997 -997 -997 189 -997 -997 69 -997 -997 168 -997 -92 -997 -997 228 -997 -997 168 -997 -997 -997 136 11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.6e+000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.700000 0.000000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGG MEME-4 regular expression -------------------------------------------------------------------------------- GGA[AT]GTG[GT] -------------------------------------------------------------------------------- Time 6.19 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCAGVA MEME-5 width = 8 sites = 17 llr = 132 E-value = 2.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::9149 pos.-specific C 19aa:14: probability G :1::1831 matrix T 9::::::: bits 2.4 2.2 1.9 1.7 * *** * Relative 1.5 * *** * Entropy 1.2 ***** * (11.2 bits) 1.0 ****** * 0.7 ****** * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel TCCCAGAA consensus C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:70473233-70473253 13 1.20e-05 GGACTACATC TCCCAGAA chr1:107599255-107599275 8 1.20e-05 CTACAAG TCCCAGAA GCCCC chr16:53468303-53468323 1 3.20e-05 . TCCCAGCA GCCCGTGCTC chr3:61235811-61235831 3 5.18e-05 TC TCCCAGGA GACATCTCGC chr6:43597138-43597158 1 5.18e-05 . TCCCAGGA GGCATCGCGG chr20:62694399-62694419 1 5.18e-05 . TCCCAGGA GGCTGTGCGC chr2:38893018-38893038 12 8.32e-05 AAACTACCAT TCCCAACA T chr1:23695383-23695403 1 8.32e-05 . TCCCAACA GCGCCTGCGG chr14:78914991-78915011 2 8.32e-05 C TGCCAGAA GGTGGCGCAT chr12:54582870-54582890 11 1.75e-04 AATGCTCCAA TCCCGGAA GG chr19:49479626-49479646 10 1.75e-04 GCGTCAATG CCCCAGAA AGC chr22:20861820-20861840 11 1.87e-04 AGACTCCATT TCCCACAA GC chr14:24701779-24701799 11 2.07e-04 TCTCCCATCG TGCCAGGA GG chr8:145159807-145159827 5 3.06e-04 CAGC CCCCAGCA GGCCTCGC chr1:243418793-243418813 3 3.06e-04 GT TCCCAGCG GGCAGAGCGC chr10:111985630-11198565 9 3.06e-04 ACTACGAT TCCCGGCA GCCG chr7:135194986-135195006 3 4.25e-04 CC TCCCAGGG GCACGCCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:70473233-70473253 1.2e-05 12_[+5] chr1:107599255-107599275 1.2e-05 7_[+5]_5 chr16:53468303-53468323 3.2e-05 [+5]_12 chr3:61235811-61235831 5.2e-05 2_[+5]_10 chr6:43597138-43597158 5.2e-05 [+5]_12 chr20:62694399-62694419 5.2e-05 [+5]_12 chr2:38893018-38893038 8.3e-05 11_[+5]_1 chr1:23695383-23695403 8.3e-05 [+5]_12 chr14:78914991-78915011 8.3e-05 1_[+5]_11 chr12:54582870-54582890 0.00017 10_[+5]_2 chr19:49479626-49479646 0.00017 9_[+5]_3 chr22:20861820-20861840 0.00019 10_[+5]_2 chr14:24701779-24701799 0.00021 10_[+5]_2 chr8:145159807-145159827 0.00031 4_[+5]_8 chr1:243418793-243418813 0.00031 2_[+5]_10 chr10:111985630-11198565 0.00031 8_[+5]_4 chr7:135194986-135195006 0.00043 2_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCAGVA width=8 seqs=17 chr16:70473233-70473253 ( 13) TCCCAGAA 1 chr1:107599255-107599275 ( 8) TCCCAGAA 1 chr16:53468303-53468323 ( 1) TCCCAGCA 1 chr3:61235811-61235831 ( 3) TCCCAGGA 1 chr6:43597138-43597158 ( 1) TCCCAGGA 1 chr20:62694399-62694419 ( 1) TCCCAGGA 1 chr2:38893018-38893038 ( 12) TCCCAACA 1 chr1:23695383-23695403 ( 1) TCCCAACA 1 chr14:78914991-78915011 ( 2) TGCCAGAA 1 chr12:54582870-54582890 ( 11) TCCCGGAA 1 chr19:49479626-49479646 ( 10) CCCCAGAA 1 chr22:20861820-20861840 ( 11) TCCCACAA 1 chr14:24701779-24701799 ( 11) TGCCAGGA 1 chr8:145159807-145159827 ( 5) CCCCAGCA 1 chr1:243418793-243418813 ( 3) TCCCAGCG 1 chr10:111985630-11198565 ( 9) TCCCGGCA 1 chr7:135194986-135195006 ( 3) TCCCAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.94083 E= 2.1e+001 -1073 -142 -1073 225 -1073 149 -140 -1073 -1073 167 -1073 -1073 -1073 167 -1073 -1073 222 -1073 -140 -1073 -69 -241 140 -1073 90 17 -8 -1073 222 -1073 -140 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.1e+001 0.000000 0.117647 0.000000 0.882353 0.000000 0.882353 0.117647 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.882353 0.000000 0.117647 0.000000 0.117647 0.058824 0.823529 0.000000 0.352941 0.352941 0.294118 0.000000 0.882353 0.000000 0.117647 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAGVA MEME-5 regular expression -------------------------------------------------------------------------------- TCCCAG[ACG]A -------------------------------------------------------------------------------- Time 6.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:30908492-30908512 9.75e-01 20 chr9:131965219-131965239 5.95e-01 20 chr19:49479626-49479646 1.33e-01 20 chr19:48907050-48907070 3.25e-01 20 chr9:22038244-22038264 3.56e-01 20 chr17:40559712-40559732 3.58e-01 20 chr19:49148224-49148244 5.97e-01 20 chr1:154979452-154979472 4.39e-02 20 chr19:42463570-42463590 4.48e-01 20 chr1:224544473-224544493 6.98e-01 20 chr3:14166385-14166405 8.30e-01 20 chr10:111985630-11198565 6.49e-03 20 chr7:23610397-23610417 6.60e-01 20 chr19:55817025-55817045 8.49e-01 20 chr11:60681336-60681356 7.06e-02 20 chr11:46134714-46134734 5.92e-01 20 chr6:43215056-43215076 5.98e-01 20 chr19:44809229-44809249 4.67e-01 20 chr19:49224382-49224402 9.61e-01 20 chr19:49248641-49248661 8.85e-01 20 chr8:144699791-144699811 1.79e-01 20 chr9:97021519-97021539 1.86e-02 6_[+2(9.67e-05)]_6 chr19:45988750-45988770 8.25e-03 20 chr14:78914991-78915011 1.85e-02 1_[+5(8.32e-05)]_11 chr12:133532921-13353294 1.75e-02 20 chr16:58426753-58426773 3.05e-01 20 chr19:49310059-49310079 2.79e-01 20 chr19:507915-507935 3.19e-01 20 chr6:31866349-31866369 9.88e-01 20 chr19:45908776-45908796 9.50e-01 20 chr17:7094976-7094996 3.58e-01 20 chr19:52097778-52097798 4.70e-01 20 chr1:243418793-243418813 2.67e-02 20 chr1:2457704-2457724 5.67e-01 20 chr19:49416559-49416579 9.47e-02 20 chr17:7118445-7118465 9.38e-01 20 chr5:178286927-178286947 2.49e-02 20 chr15:74692427-74692447 8.43e-01 20 chr17:7358859-7358879 4.42e-02 20 chr16:68482625-68482645 4.97e-01 20 chr7:150689978-150689998 1.85e-01 20 chr16:30103290-30103310 4.87e-01 20 chr19:48833468-48833488 6.18e-01 20 chr19:48922717-48922737 1.54e-01 20 chr12:54582870-54582890 4.70e-02 20 chr9:115819025-115819045 8.68e-01 20 chr1:107599255-107599275 5.15e-04 7_[+5(1.20e-05)]_5 chr19:54618743-54618763 7.52e-01 20 chr19:49013964-49013984 8.35e-02 20 chr10:5882401-5882421 1.49e-01 20 chr5:178157747-178157767 2.08e-01 20 chr12:751994-752014 6.83e-03 7_[+4(1.92e-05)]_5 chr1:6673653-6673673 2.68e-01 20 chr20:62694399-62694419 2.77e-02 [+5(5.18e-05)]_12 chr6:43597138-43597158 2.02e-02 [+5(5.18e-05)]_12 chr3:183892429-183892449 2.48e-03 8_[+2(6.74e-05)]_4 chr14:77787323-77787343 4.98e-01 20 chr2:232646325-232646345 9.22e-02 20 chr2:172543944-172543964 7.73e-01 20 chr8:82755042-82755062 2.24e-01 20 chr16:70473233-70473253 3.94e-05 2_[+1(2.35e-05)]_2_[+5(1.20e-05)] chr19:58838319-58838339 6.06e-01 20 chr6:10147368-10147388 1.46e-02 8_[+1(2.35e-05)]_4 chr1:45806162-45806182 6.51e-01 20 chr5:85913665-85913685 7.44e-01 20 chr19:48866463-48866483 6.21e-01 20 chr1:244816075-244816095 4.54e-01 20 chr19:49017259-49017279 8.84e-01 20 chr20:33735177-33735197 1.02e-01 11_[+3(6.86e-05)]_1 chr22:38709539-38709559 3.03e-03 20 chr19:40315325-40315345 3.67e-01 20 chr18:9913600-9913620 7.93e-01 20 chr12:122985591-12298561 4.32e-01 20 chr2:170430430-170430450 4.81e-01 20 chr14:94373255-94373275 1.49e-01 20 chr10:104262625-10426264 1.98e-02 20 chr5:131526056-131526076 1.08e-01 8_[+3(8.76e-05)]_4 chr19:36208471-36208491 2.81e-03 20 chr17:73780737-73780757 2.20e-01 20 chr6:42531636-42531656 8.13e-01 20 chr1:23695383-23695403 8.75e-02 [+5(8.32e-05)]_12 chr22:29986080-29986100 9.35e-01 20 chr17:76250681-76250701 8.47e-01 20 chr16:15150047-15150067 3.54e-03 11_[+4(1.92e-05)]_1 chr19:37178398-37178418 7.72e-01 20 chr7:150755117-150755137 4.06e-01 20 chr5:157286177-157286197 1.24e-02 [+4(4.95e-05)]_12 chr1:47799926-47799946 6.71e-01 20 chr19:44617466-44617486 2.50e-04 12_[+2(3.27e-05)] chr1:1051596-1051616 6.40e-01 20 chr1:151584413-151584433 7.57e-01 20 chr19:57946569-57946589 2.30e-01 20 chr17:4634617-4634637 3.75e-03 1_[+2(3.96e-06)]_11 chr12:861546-861566 5.94e-01 20 chr10:74870192-74870212 2.14e-02 9_[+4(4.95e-05)]_3 chr5:173043768-173043788 1.70e-03 3_[+1(1.16e-05)]_9 chr16:30934670-30934690 4.19e-04 3_[+2(3.96e-06)]_9 chr19:38397769-38397789 8.03e-01 20 chr22:46684366-46684386 3.34e-02 11_[+1(8.28e-05)]_1 chr4:104021009-104021029 8.71e-01 20 chr19:44507038-44507058 4.02e-01 20 chr13:41838016-41838036 2.27e-03 1_[+2(3.96e-06)]_11 chr9:134955301-134955321 3.05e-01 20 chr16:67840621-67840641 2.09e-01 20 chr12:56710158-56710178 7.51e-01 20 chr19:2457021-2457041 9.75e-01 20 chr6:160883656-160883676 9.69e-02 20 chr1:155113017-155113037 1.97e-01 20 chr5:55008192-55008212 8.34e-01 20 chr12:110151349-11015136 3.88e-01 20 chr4:18023798-18023818 1.35e-01 20 chr19:47354325-47354345 2.58e-01 20 chr4:2420579-2420599 3.48e-01 20 chr19:44598454-44598474 8.23e-01 20 chr17:38083897-38083917 4.49e-01 20 chr1:54519179-54519199 3.24e-01 20 chr1:22110164-22110184 5.53e-01 20 chr20:47805052-47805072 4.26e-01 20 chr2:37193778-37193798 9.15e-01 20 chr3:46037337-46037357 1.21e-01 20 chr11:65488328-65488348 1.97e-01 20 chr16:686404-686424 4.04e-02 8_[+1(1.16e-05)]_4 chr1:212856790-212856810 8.19e-03 12_[+4(1.92e-05)] chr18:46065338-46065358 5.93e-01 20 chr13:52188838-52188858 8.85e-01 20 chr16:46918173-46918193 2.72e-01 20 chr18:32923939-32923959 1.46e-02 11_[+1(7.24e-06)]_1 chr19:50379901-50379921 5.52e-02 20 chr12:90274684-90274704 4.80e-03 12_[+4(3.80e-05)] chr19:49250518-49250538 4.53e-01 20 chr15:64386182-64386202 5.62e-01 20 chr16:67880728-67880748 6.75e-01 20 chr3:50397104-50397124 8.44e-01 20 chr9:138853288-138853308 2.04e-01 20 chr2:241075720-241075740 3.44e-02 6_[+3(6.86e-05)]_6 chr12:104323553-10432357 2.13e-01 20 chr14:24701779-24701799 5.87e-02 20 chr8:52921158-52921178 2.58e-02 3_[+3(3.01e-05)]_9 chr19:46366577-46366597 1.97e-02 1_[+2(3.96e-05)]_11 chr14:82000489-82000509 7.92e-01 20 chr15:41099769-41099789 2.09e-01 20 chr13:50569837-50569857 1.23e-02 [+4(3.80e-05)]_12 chr12:6741666-6741686 1.54e-01 20 chr7:140098335-140098355 7.38e-01 20 chr17:19912607-19912627 9.01e-01 20 chr19:2086733-2086753 2.99e-01 20 chr9:130548265-130548285 6.56e-02 8_[+4(9.20e-05)]_4 chr2:197105079-197105099 1.60e-02 [+3(1.83e-05)]_12 chr13:103451421-10345144 6.67e-01 20 chr1:155990749-155990769 3.79e-01 20 chr1:149871095-149871115 6.75e-01 20 chr19:49404506-49404526 3.24e-01 20 chr10:97055131-97055151 4.83e-01 20 chr10:72124435-72124455 9.44e-01 20 chr3:57741897-57741917 9.74e-01 20 chr15:75182351-75182371 9.04e-01 20 chr19:7616386-7616406 8.31e-03 20 chr16:69599785-69599805 2.50e-01 20 chr13:31736534-31736554 2.70e-04 10_[+2(3.27e-05)]_2 chr1:115300176-115300196 9.76e-03 7_[+1(7.24e-06)]_5 chr3:61235811-61235831 4.88e-03 2_[+5(5.18e-05)]_10 chr16:577622-577642 8.15e-03 8_[+1(2.35e-05)]_4 chr8:67525787-67525807 8.91e-02 4_[+3(9.90e-05)]_8 chr9:130700154-130700174 3.55e-01 20 chr12:56323302-56323322 6.64e-02 20 chr11:72145673-72145693 1.44e-01 2_[+1(8.28e-05)]_10 chr16:53468303-53468323 1.32e-02 [+5(3.20e-05)]_12 chr9:102861375-102861395 3.71e-01 20 chr17:21117590-21117610 4.81e-02 20 chr16:4321922-4321942 5.36e-01 20 chr16:67700675-67700695 8.98e-01 20 chr11:64692087-64692107 2.89e-02 7_[+3(6.86e-05)]_5 chr20:25677543-25677563 1.99e-01 20 chr8:145159807-145159827 9.74e-02 20 chr13:26827950-26827970 6.77e-01 20 chr17:3866936-3866956 2.86e-02 20 chr6:163148876-163148896 8.06e-02 10_[+2(9.67e-05)]_2 chr17:71189117-71189137 5.04e-02 20 chr6:41703424-41703444 4.33e-02 [+2(9.67e-05)]_12 chr19:49223953-49223973 6.78e-02 5_[+1(3.08e-05)]_7 chr9:104161013-104161033 5.55e-01 20 chr12:6961680-6961700 1.60e-02 10_[+2(2.14e-05)]_2 chr14:65569320-65569340 5.24e-01 20 chr1:153931183-153931203 4.43e-02 20 chr10:43048374-43048394 7.76e-01 20 chr19:49362040-49362060 3.27e-01 20 chr1:156024518-156024538 5.74e-01 20 chr2:86332731-86332751 6.89e-01 20 chr19:55629116-55629136 2.70e-02 11_[+4(6.12e-05)]_1 chr1:182758813-182758833 2.79e-03 5_[+1(3.08e-05)]_7 chr9:95640389-95640409 9.21e-01 20 chr12:88535996-88536016 1.76e-02 20 chr12:94071095-94071115 5.65e-01 20 chr11:3078728-3078748 4.23e-02 20 chr8:110346378-110346398 6.65e-01 20 chr20:48732545-48732565 2.28e-02 6_[+2(5.93e-05)]_6 chr20:18477887-18477907 2.00e-03 20 chr7:128735491-128735511 3.71e-02 6_[+1(8.28e-05)]_6 chr14:73494014-73494034 4.07e-01 20 chr6:110501331-110501351 8.01e-02 3_[+3(8.76e-05)]_9 chr11:450246-450266 3.73e-01 20 chr2:38893018-38893038 1.47e-03 11_[+5(8.32e-05)]_1 chr10:106098388-10609840 8.25e-01 20 chr11:82997464-82997484 2.75e-01 20 chr2:242448114-242448134 8.52e-01 20 chr19:49947113-49947133 4.30e-01 20 chr2:217277096-217277116 8.67e-05 1_[+5(1.20e-05)]_11 chr3:51534197-51534217 4.21e-01 20 chr3:50388533-50388553 2.32e-01 20 chr3:47844602-47844622 6.96e-01 20 chr19:49469224-49469244 8.86e-01 20 chr13:41768748-41768768 7.33e-01 20 chr1:156542374-156542394 7.72e-01 20 chr10:38383197-38383217 9.56e-01 20 chr19:50836877-50836897 4.91e-01 20 chr16:84674950-84674970 9.54e-04 7_[+3(1.15e-05)]_5 chr9:116341374-116341394 2.49e-01 20 chr3:47029428-47029448 1.25e-01 7_[+3(8.76e-05)]_5 chr5:40756084-40756104 6.76e-01 20 chr4:102339397-102339417 5.80e-02 20 chr3:4534962-4534982 3.23e-02 9_[+1(2.35e-05)]_3 chr19:44669159-44669179 2.32e-02 6_[+3(6.86e-05)]_6 chr1:156737099-156737119 5.70e-01 20 chr1:205744631-205744651 8.11e-01 20 chr19:55690544-55690564 6.00e-01 20 chr11:111317380-11131740 4.97e-01 20 chr19:3435296-3435316 2.02e-01 20 chr19:15574738-15574758 1.30e-02 5_[+3(1.15e-05)]_7 chr16:58718679-58718699 7.09e-01 20 chr19:2819802-2819822 9.58e-01 20 chr20:44634021-44634041 2.16e-01 20 chr18:60765914-60765934 7.15e-01 20 chr12:55378565-55378585 3.86e-02 20 chr19:37861907-37861927 2.71e-03 6_[+2(1.47e-05)]_6 chr16:58664441-58664461 5.67e-01 20 chr17:76374709-76374729 2.11e-01 20 chr16:81779977-81779997 7.16e-01 20 chr7:135194986-135195006 1.06e-01 20 chr19:50163196-50163216 4.60e-01 20 chr10:26737779-26737799 6.32e-02 20 chr6:8064779-8064799 4.70e-02 20 chr13:41706974-41706994 3.47e-01 20 chr17:16439126-16439146 2.31e-01 20 chr16:87417701-87417721 6.90e-01 20 chr12:9102605-9102625 4.96e-01 20 chr11:77899753-77899773 2.44e-01 20 chr7:100888078-100888098 1.96e-01 20 chr22:20861820-20861840 8.78e-04 20 chr1:156474819-156474839 7.85e-03 4_[+4(3.80e-05)]_8 chr16:19535107-19535127 6.05e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************