******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ESRRA.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:26801810-26801830 1.0000 20 chr1:76760343-76760363 1.0000 20 chr12:6561809-6561829 1.0000 20 chr1:102900171-102900191 1.0000 20 chr16:29986640-29986660 1.0000 20 chr21:44727104-44727124 1.0000 20 chr1:32879686-32879706 1.0000 20 chr15:52513282-52513302 1.0000 20 chr9:130547134-130547154 1.0000 20 chr8:78310681-78310701 1.0000 20 chr18:43246648-43246668 1.0000 20 chr11:77153930-77153950 1.0000 20 chr12:104917289-10491730 1.0000 20 chr11:6689051-6689071 1.0000 20 chr7:31728177-31728197 1.0000 20 chr2:118228045-118228065 1.0000 20 chr11:63913712-63913732 1.0000 20 chr20:46387574-46387594 1.0000 20 chr5:172337932-172337952 1.0000 20 chr17:43096156-43096176 1.0000 20 chr7:41173891-41173911 1.0000 20 chr13:93495982-93496002 1.0000 20 chr3:159620541-159620561 1.0000 20 chr19:952944-952964 1.0000 20 chr2:184213530-184213550 1.0000 20 chr19:6458564-6458584 1.0000 20 chr8:54926701-54926721 1.0000 20 chr20:7746040-7746060 1.0000 20 chr9:98716374-98716394 1.0000 20 chr14:77424615-77424635 1.0000 20 chr16:10859844-10859864 1.0000 20 chr11:115867328-11586734 1.0000 20 chr6:165463056-165463076 1.0000 20 chr12:2261552-2261572 1.0000 20 chr5:142814051-142814071 1.0000 20 chr13:52376370-52376390 1.0000 20 chr19:4078321-4078341 1.0000 20 chr1:223723275-223723295 1.0000 20 chr7:101331553-101331573 1.0000 20 chr3:167806318-167806338 1.0000 20 chr9:95857612-95857632 1.0000 20 chr19:52846984-52847004 1.0000 20 chr2:42064279-42064299 1.0000 20 chr21:47979736-47979756 1.0000 20 chr4:146856976-146856996 1.0000 20 chr13:42066599-42066619 1.0000 20 chr14:54917429-54917449 1.0000 20 chr6:11830491-11830511 1.0000 20 chr14:61805334-61805354 1.0000 20 chr10:125087257-12508727 1.0000 20 chr7:92439690-92439710 1.0000 20 chr16:11464686-11464706 1.0000 20 chr7:27236013-27236033 1.0000 20 chr1:117612013-117612033 1.0000 20 chrX:1655036-1655056 1.0000 20 chr15:93444743-93444763 1.0000 20 chr10:94027296-94027316 1.0000 20 chr15:70044035-70044055 1.0000 20 chr12:92937420-92937440 1.0000 20 chr18:4252108-4252128 1.0000 20 chr9:95748652-95748672 1.0000 20 chr6:85060363-85060383 1.0000 20 chr20:328651-328671 1.0000 20 chr17:46725001-46725021 1.0000 20 chr8:37992039-37992059 1.0000 20 chr1:93459820-93459840 1.0000 20 chr9:76892568-76892588 1.0000 20 chr2:16938592-16938612 1.0000 20 chr19:30195996-30196016 1.0000 20 chr10:99092848-99092868 1.0000 20 chr17:77895415-77895435 1.0000 20 chr1:155036992-155037012 1.0000 20 chr21:43835817-43835837 1.0000 20 chr12:31905101-31905121 1.0000 20 chr18:4264483-4264503 1.0000 20 chr17:74402598-74402618 1.0000 20 chr6:42694485-42694505 1.0000 20 chr12:103096489-10309650 1.0000 20 chr13:113457007-11345702 1.0000 20 chr14:93998173-93998193 1.0000 20 chr6:44306461-44306481 1.0000 20 chr3:45610493-45610513 1.0000 20 chr1:8824053-8824073 1.0000 20 chr2:45696521-45696541 1.0000 20 chr19:30302264-30302284 1.0000 20 chr19:2620889-2620909 1.0000 20 chr22:47154897-47154917 1.0000 20 chr18:13629911-13629931 1.0000 20 chr3:58193895-58193915 1.0000 20 chr6:21167224-21167244 1.0000 20 chr17:26870935-26870955 1.0000 20 chr7:33526407-33526427 1.0000 20 chr14:35099476-35099496 1.0000 20 chr12:56696322-56696342 1.0000 20 chr1:53758475-53758495 1.0000 20 chr2:184079209-184079229 1.0000 20 chr14:35801034-35801054 1.0000 20 chr10:60828503-60828523 1.0000 20 chr15:59596517-59596537 1.0000 20 chrX:6666752-6666772 1.0000 20 chr18:44497977-44497997 1.0000 20 chr3:152229870-152229890 1.0000 20 chrX:140000770-140000790 1.0000 20 chr1:36814991-36815011 1.0000 20 chr3:197289023-197289043 1.0000 20 chr2:23672491-23672511 1.0000 20 chr3:65950063-65950083 1.0000 20 chr20:4800034-4800054 1.0000 20 chr13:109614020-10961404 1.0000 20 chr7:30199642-30199662 1.0000 20 chr1:27936268-27936288 1.0000 20 chr12:2042695-2042715 1.0000 20 chr22:48314504-48314524 1.0000 20 chr20:31114523-31114543 1.0000 20 chr10:67558057-67558077 1.0000 20 chr2:88539354-88539374 1.0000 20 chr3:50638538-50638558 1.0000 20 chr12:118558912-11855893 1.0000 20 chr7:93674293-93674313 1.0000 20 chr1:25363932-25363952 1.0000 20 chr6:16033681-16033701 1.0000 20 chr3:49195751-49195771 1.0000 20 chr20:32889523-32889543 1.0000 20 chr2:137139710-137139730 1.0000 20 chr15:68373267-68373287 1.0000 20 chr15:90638844-90638864 1.0000 20 chr13:46863166-46863186 1.0000 20 chr3:182876130-182876150 1.0000 20 chr10:106184621-10618464 1.0000 20 chr11:65570546-65570566 1.0000 20 chr19:16739981-16740001 1.0000 20 chr17:40331053-40331073 1.0000 20 chr3:4548947-4548967 1.0000 20 chr1:202128500-202128520 1.0000 20 chr11:118747593-11874761 1.0000 20 chr9:18769155-18769175 1.0000 20 chr17:75878793-75878813 1.0000 20 chr16:85481035-85481055 1.0000 20 chr11:106004442-10600446 1.0000 20 chr1:166055698-166055718 1.0000 20 chr2:102239320-102239340 1.0000 20 chr9:109809197-109809217 1.0000 20 chr16:30887923-30887943 1.0000 20 chr3:32619343-32619363 1.0000 20 chr5:149730219-149730239 1.0000 20 chr8:98609659-98609679 1.0000 20 chr20:56039827-56039847 1.0000 20 chr11:47664368-47664388 1.0000 20 chr12:111020405-11102042 1.0000 20 chr16:22692217-22692237 1.0000 20 chr3:6568737-6568757 1.0000 20 chr4:108104525-108104545 1.0000 20 chr11:79193039-79193059 1.0000 20 chr10:105726421-10572644 1.0000 20 chr16:4666610-4666630 1.0000 20 chr4:139121493-139121513 1.0000 20 chr1:161066049-161066069 1.0000 20 chr1:175178823-175178843 1.0000 20 chr11:57297868-57297888 1.0000 20 chr2:61034677-61034697 1.0000 20 chr3:58680382-58680402 1.0000 20 chr10:18601813-18601833 1.0000 20 chr3:123927125-123927145 1.0000 20 chr4:148639193-148639213 1.0000 20 chr7:44835837-44835857 1.0000 20 chr8:129060918-129060938 1.0000 20 chr3:53290343-53290363 1.0000 20 chr20:13766064-13766084 1.0000 20 chr20:31408297-31408317 1.0000 20 chr22:24109923-24109943 1.0000 20 chr2:20335565-20335585 1.0000 20 chr5:138723957-138723977 1.0000 20 chr13:80025750-80025770 1.0000 20 chr3:72390372-72390392 1.0000 20 chr14:70119757-70119777 1.0000 20 chr16:19129205-19129225 1.0000 20 chr1:236017814-236017834 1.0000 20 chr16:84641459-84641479 1.0000 20 chr10:135192090-13519211 1.0000 20 chr5:142382918-142382938 1.0000 20 chr3:56898356-56898376 1.0000 20 chr16:692312-692332 1.0000 20 chr12:11707023-11707043 1.0000 20 chr9:138779619-138779639 1.0000 20 chr6:43969347-43969367 1.0000 20 chr2:88565281-88565301 1.0000 20 chr10:64391899-64391919 1.0000 20 chr6:107349782-107349802 1.0000 20 chr9:37531749-37531769 1.0000 20 chr19:10655226-10655246 1.0000 20 chr14:97756535-97756555 1.0000 20 chrX:103402027-103402047 1.0000 20 chr3:141122557-141122577 1.0000 20 chr17:39835577-39835597 1.0000 20 chr12:46121848-46121868 1.0000 20 chr1:22366359-22366379 1.0000 20 chr2:85896810-85896830 1.0000 20 chr4:151003600-151003620 1.0000 20 chr15:85146474-85146494 1.0000 20 chr2:119745642-119745662 1.0000 20 chr19:54836618-54836638 1.0000 20 chr5:124272437-124272457 1.0000 20 chr2:54797147-54797167 1.0000 20 chr6:34360694-34360714 1.0000 20 chr2:62642193-62642213 1.0000 20 chr22:37558535-37558555 1.0000 20 chr20:52239175-52239195 1.0000 20 chr5:162617953-162617973 1.0000 20 chr20:3776516-3776536 1.0000 20 chr19:55972698-55972718 1.0000 20 chr5:32540730-32540750 1.0000 20 chr6:20428333-20428353 1.0000 20 chr9:17863734-17863754 1.0000 20 chr9:114601877-114601897 1.0000 20 chr10:79261818-79261838 1.0000 20 chr1:22118280-22118300 1.0000 20 chr11:3914752-3914772 1.0000 20 chr22:42143162-42143182 1.0000 20 chrX:51546709-51546729 1.0000 20 chr1:110198826-110198846 1.0000 20 chr11:124539228-12453924 1.0000 20 chr21:44596943-44596963 1.0000 20 chr3:141208229-141208249 1.0000 20 chr5:42812081-42812101 1.0000 20 chr1:17408117-17408137 1.0000 20 chr1:19908916-19908936 1.0000 20 chr12:42693233-42693253 1.0000 20 chrX:3618178-3618198 1.0000 20 chr17:78873332-78873352 1.0000 20 chr2:201991653-201991673 1.0000 20 chr11:64072356-64072376 1.0000 20 chr7:100048237-100048257 1.0000 20 chr15:64385397-64385417 1.0000 20 chr6:93536513-93536533 1.0000 20 chr12:93735366-93735386 1.0000 20 chr6:41681590-41681610 1.0000 20 chr14:75536143-75536163 1.0000 20 chr9:1271942-1271962 1.0000 20 chr3:15508780-15508800 1.0000 20 chr5:141071572-141071592 1.0000 20 chr20:34331296-34331316 1.0000 20 chr10:97005317-97005337 1.0000 20 chr3:52311863-52311883 1.0000 20 chr9:112731785-112731805 1.0000 20 chr19:50844487-50844507 1.0000 20 chr9:134543949-134543969 1.0000 20 chr3:32989382-32989402 1.0000 20 chr1:40505094-40505114 1.0000 20 chr16:53491725-53491745 1.0000 20 chr19:42924298-42924318 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ESRRA/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ESRRA.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.241 G 0.253 T 0.254 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.241 G 0.253 T 0.254 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACCTTG MEME-1 width = 8 sites = 36 llr = 329 E-value = 9.8e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::8::::: pos.-specific C ::1a9::2 probability G :a:::::8 matrix T a:1:1aa: bits 2.1 * ** 1.8 ** * ** 1.6 ** **** 1.4 ** **** Relative 1.2 ** **** Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACCTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:42812081-42812101 4 1.54e-05 CAG TGACCTTG CAAGCAGAG chr16:692312-692332 10 1.54e-05 AGCGGAGGG TGACCTTG GGG chr5:138723957-138723977 1 1.54e-05 . TGACCTTG TCCACTGGCC chr20:56039827-56039847 8 1.54e-05 GAGCCAT TGACCTTG AGCGT chr5:149730219-149730239 1 1.54e-05 . TGACCTTG ACCTTTTGAG chr18:44497977-44497997 3 1.54e-05 TC TGACCTTG AAGGGCACCT chrX:6666752-6666772 12 1.54e-05 CATTGACGAG TGACCTTG A chr2:184079209-184079229 2 1.54e-05 G TGACCTTG GGAATTATAT chr3:58193895-58193915 10 1.54e-05 CCTTGCACT TGACCTTG AGC chr19:2620889-2620909 6 1.54e-05 TTCTG TGACCTTG GGTTTCC chr14:93998173-93998193 4 1.54e-05 gtg tgaccttg aagaattta chr13:113457007-11345702 6 1.54e-05 ctagg tgaccttg ggtttgg chr6:11830491-11830511 4 1.54e-05 GGC TGACCTTG GAGCTGAAG chr19:4078321-4078341 9 1.54e-05 tccctgtg tgaccttg ggtg chr20:7746040-7746060 9 1.54e-05 cctctggc tgaccttg agga chr19:952944-952964 7 1.54e-05 CACCTG TGACCTTG GGCACT chr2:118228045-118228065 10 1.54e-05 ggggcagag tgaccttg aca chr11:77153930-77153950 12 1.54e-05 attcacaagg tgaccttg t chr20:52239175-52239195 7 3.00e-05 agacca tgaccttc cgaagg chr3:72390372-72390392 10 3.00e-05 GAGCTCATT TGACCTTC ACA chr4:139121493-139121513 4 3.00e-05 AAA TGACCTTC AGTAAACGA chr2:16938592-16938612 3 3.00e-05 AA TGACCTTC TGGAGGATGC chr18:4252108-4252128 4 3.00e-05 GAA TGACCTTC AGGGAGTTG chrX:140000770-140000790 6 4.47e-05 ctatt tgcccttg ctgatca chr12:2261552-2261572 7 4.47e-05 ggtgtg tgcccttg aaggca chr1:117612013-117612033 12 6.01e-05 GACTTGAAGT TGTCCTTG A chr13:93495982-93496002 5 6.01e-05 TCTT TGTCCTTG AAAAAACA chr1:32879686-32879706 6 6.01e-05 cactc tgtccttg gtctaga chr9:114601877-114601897 13 1.05e-04 TCTCTGCCCA TGTCCTTC chr3:159620541-159620561 4 1.20e-04 TGT TGACCTTT ACAGGCACT chr12:11707023-11707043 12 1.50e-04 GAAATGTTCT TGACTTTC A chr7:44835837-44835857 6 1.50e-04 CCAGT CGACCTTG ACTGGCG chr8:129060918-129060938 9 1.66e-04 actttact taaccttg ctga chr19:54836618-54836638 3 1.81e-04 gg tgcctttg tTTATCTTTG chr14:35801034-35801054 9 1.81e-04 GTCATCTG TGCCTTTG CTGA chr9:95748652-95748672 3 1.81e-04 cc tgcctttg aatatgacct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:42812081-42812101 1.5e-05 3_[+1]_9 chr16:692312-692332 1.5e-05 9_[+1]_3 chr5:138723957-138723977 1.5e-05 [+1]_12 chr20:56039827-56039847 1.5e-05 7_[+1]_5 chr5:149730219-149730239 1.5e-05 [+1]_12 chr18:44497977-44497997 1.5e-05 2_[+1]_10 chrX:6666752-6666772 1.5e-05 11_[+1]_1 chr2:184079209-184079229 1.5e-05 1_[+1]_11 chr3:58193895-58193915 1.5e-05 9_[+1]_3 chr19:2620889-2620909 1.5e-05 5_[+1]_7 chr14:93998173-93998193 1.5e-05 3_[+1]_9 chr13:113457007-11345702 1.5e-05 5_[+1]_7 chr6:11830491-11830511 1.5e-05 3_[+1]_9 chr19:4078321-4078341 1.5e-05 8_[+1]_4 chr20:7746040-7746060 1.5e-05 8_[+1]_4 chr19:952944-952964 1.5e-05 6_[+1]_6 chr2:118228045-118228065 1.5e-05 9_[+1]_3 chr11:77153930-77153950 1.5e-05 11_[+1]_1 chr20:52239175-52239195 3e-05 6_[+1]_6 chr3:72390372-72390392 3e-05 9_[+1]_3 chr4:139121493-139121513 3e-05 3_[+1]_9 chr2:16938592-16938612 3e-05 2_[+1]_10 chr18:4252108-4252128 3e-05 3_[+1]_9 chrX:140000770-140000790 4.5e-05 5_[+1]_7 chr12:2261552-2261572 4.5e-05 6_[+1]_6 chr1:117612013-117612033 6e-05 11_[+1]_1 chr13:93495982-93496002 6e-05 4_[+1]_8 chr1:32879686-32879706 6e-05 5_[+1]_7 chr9:114601877-114601897 0.00011 12_[+1] chr3:159620541-159620561 0.00012 3_[+1]_9 chr12:11707023-11707043 0.00015 11_[+1]_1 chr7:44835837-44835857 0.00015 5_[+1]_7 chr8:129060918-129060938 0.00017 8_[+1]_4 chr19:54836618-54836638 0.00018 2_[+1]_10 chr14:35801034-35801054 0.00018 8_[+1]_4 chr9:95748652-95748672 0.00018 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACCTTG width=8 seqs=36 chr5:42812081-42812101 ( 4) TGACCTTG 1 chr16:692312-692332 ( 10) TGACCTTG 1 chr5:138723957-138723977 ( 1) TGACCTTG 1 chr20:56039827-56039847 ( 8) TGACCTTG 1 chr5:149730219-149730239 ( 1) TGACCTTG 1 chr18:44497977-44497997 ( 3) TGACCTTG 1 chrX:6666752-6666772 ( 12) TGACCTTG 1 chr2:184079209-184079229 ( 2) TGACCTTG 1 chr3:58193895-58193915 ( 10) TGACCTTG 1 chr19:2620889-2620909 ( 6) TGACCTTG 1 chr14:93998173-93998193 ( 4) TGACCTTG 1 chr13:113457007-11345702 ( 6) TGACCTTG 1 chr6:11830491-11830511 ( 4) TGACCTTG 1 chr19:4078321-4078341 ( 9) TGACCTTG 1 chr20:7746040-7746060 ( 9) TGACCTTG 1 chr19:952944-952964 ( 7) TGACCTTG 1 chr2:118228045-118228065 ( 10) TGACCTTG 1 chr11:77153930-77153950 ( 12) TGACCTTG 1 chr20:52239175-52239195 ( 7) TGACCTTC 1 chr3:72390372-72390392 ( 10) TGACCTTC 1 chr4:139121493-139121513 ( 4) TGACCTTC 1 chr2:16938592-16938612 ( 3) TGACCTTC 1 chr18:4252108-4252128 ( 4) TGACCTTC 1 chrX:140000770-140000790 ( 6) TGCCCTTG 1 chr12:2261552-2261572 ( 7) TGCCCTTG 1 chr1:117612013-117612033 ( 12) TGTCCTTG 1 chr13:93495982-93496002 ( 5) TGTCCTTG 1 chr1:32879686-32879706 ( 6) TGTCCTTG 1 chr9:114601877-114601897 ( 13) TGTCCTTC 1 chr3:159620541-159620561 ( 4) TGACCTTT 1 chr12:11707023-11707043 ( 12) TGACTTTC 1 chr7:44835837-44835857 ( 6) CGACCTTG 1 chr8:129060918-129060938 ( 9) TAACCTTG 1 chr19:54836618-54836638 ( 3) TGCCTTTG 1 chr14:35801034-35801054 ( 9) TGCCTTTG 1 chr9:95748652-95748672 ( 3) TGCCTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.33539 E= 9.8e-043 -1181 -311 -1181 193 -318 -1181 194 -1181 157 -79 -1181 -119 -1181 205 -1181 -1181 -1181 188 -1181 -119 -1181 -1181 -1181 197 -1181 -1181 -1181 197 -1181 -31 162 -319 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 9.8e-043 0.000000 0.027778 0.000000 0.972222 0.027778 0.000000 0.972222 0.000000 0.750000 0.138889 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.194444 0.777778 0.027778 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTG MEME-1 regular expression -------------------------------------------------------------------------------- TGACCTTG -------------------------------------------------------------------------------- Time 2.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAGGTCA MEME-2 width = 8 sites = 24 llr = 220 E-value = 5.0e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a8::1:a pos.-specific C 9:::::a: probability G 1:29a::: matrix T :::::9:: bits 2.1 * * 1.8 * * * 1.6 ** * ** 1.4 ** ** ** Relative 1.2 ******** Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGGTCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:51546709-51546729 3 1.51e-05 TT CAAGGTCA AGGCtttttt chr9:17863734-17863754 3 1.51e-05 tc caaggtca atggggtgaa chr16:84641459-84641479 9 1.51e-05 Ggagaaga caaggtca tgat chr17:40331053-40331073 9 1.51e-05 GAAGAGGT CAAGGTCA GGTC chr3:50638538-50638558 13 1.51e-05 CTACTTCCCT CAAGGTCA chr15:59596517-59596537 10 1.51e-05 gtacgtggc caaggtca cat chr21:43835817-43835837 13 1.51e-05 gaggctcagt caaggtca chr2:42064279-42064299 7 1.51e-05 TTGGTC CAAGGTCA CGAGGA chr3:167806318-167806338 4 1.51e-05 gct caaggtca ccctgctgg chr8:54926701-54926721 5 1.51e-05 tgcc caaggtca tactgacg chr19:6458564-6458584 11 1.51e-05 tgaggctctg caaggtca ag chr1:102900171-102900191 7 1.51e-05 gcatgt caaggtca ctctgc chr3:49195751-49195771 6 3.03e-05 AAGGT CAGGGTCA TGAATGG chr1:53758475-53758495 5 3.03e-05 ggag cagggtca cagtctga chr4:146856976-146856996 12 3.03e-05 cgcaggaggt cagggtca a chr9:138779619-138779639 9 4.53e-05 AAGTCAAA CAAGGACA CGGG chr15:52513282-52513302 2 4.53e-05 A CAAGGACA TTTCAATGTC chr6:41681590-41681610 11 6.11e-05 CACACTCCCT GAAGGTCA TA chr5:124272437-124272457 6 6.11e-05 CCTTA GAAGGTCA CGTTGTA chr14:75536143-75536163 5 7.62e-05 TCCC CAAGGGCA GGGCTGGA chr6:20428333-20428353 9 1.37e-04 TTTTCTCC CAAGGTGA GGGA chr11:57297868-57297888 2 1.37e-04 c caaggtcg cacaggacgt chr9:37531749-37531769 7 2.14e-04 GAGACA CAGAGTCA CAAGGA chr6:43969347-43969367 1 2.14e-04 . CAGTGTCA CAGGTCACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:51546709-51546729 1.5e-05 2_[+2]_10 chr9:17863734-17863754 1.5e-05 2_[+2]_10 chr16:84641459-84641479 1.5e-05 8_[+2]_4 chr17:40331053-40331073 1.5e-05 8_[+2]_4 chr3:50638538-50638558 1.5e-05 12_[+2] chr15:59596517-59596537 1.5e-05 9_[+2]_3 chr21:43835817-43835837 1.5e-05 12_[+2] chr2:42064279-42064299 1.5e-05 6_[+2]_6 chr3:167806318-167806338 1.5e-05 3_[+2]_9 chr8:54926701-54926721 1.5e-05 4_[+2]_8 chr19:6458564-6458584 1.5e-05 10_[+2]_2 chr1:102900171-102900191 1.5e-05 6_[+2]_6 chr3:49195751-49195771 3e-05 5_[+2]_7 chr1:53758475-53758495 3e-05 4_[+2]_8 chr4:146856976-146856996 3e-05 11_[+2]_1 chr9:138779619-138779639 4.5e-05 8_[+2]_4 chr15:52513282-52513302 4.5e-05 1_[+2]_11 chr6:41681590-41681610 6.1e-05 10_[+2]_2 chr5:124272437-124272457 6.1e-05 5_[+2]_7 chr14:75536143-75536163 7.6e-05 4_[+2]_8 chr6:20428333-20428353 0.00014 8_[+2]_4 chr11:57297868-57297888 0.00014 1_[+2]_11 chr9:37531749-37531769 0.00021 6_[+2]_6 chr6:43969347-43969367 0.00021 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGGTCA width=8 seqs=24 chrX:51546709-51546729 ( 3) CAAGGTCA 1 chr9:17863734-17863754 ( 3) CAAGGTCA 1 chr16:84641459-84641479 ( 9) CAAGGTCA 1 chr17:40331053-40331073 ( 9) CAAGGTCA 1 chr3:50638538-50638558 ( 13) CAAGGTCA 1 chr15:59596517-59596537 ( 10) CAAGGTCA 1 chr21:43835817-43835837 ( 13) CAAGGTCA 1 chr2:42064279-42064299 ( 7) CAAGGTCA 1 chr3:167806318-167806338 ( 4) CAAGGTCA 1 chr8:54926701-54926721 ( 5) CAAGGTCA 1 chr19:6458564-6458584 ( 11) CAAGGTCA 1 chr1:102900171-102900191 ( 7) CAAGGTCA 1 chr3:49195751-49195771 ( 6) CAGGGTCA 1 chr1:53758475-53758495 ( 5) CAGGGTCA 1 chr4:146856976-146856996 ( 12) CAGGGTCA 1 chr9:138779619-138779639 ( 9) CAAGGACA 1 chr15:52513282-52513302 ( 2) CAAGGACA 1 chr6:41681590-41681610 ( 11) GAAGGTCA 1 chr5:124272437-124272457 ( 6) GAAGGTCA 1 chr14:75536143-75536163 ( 5) CAAGGGCA 1 chr6:20428333-20428353 ( 9) CAAGGTGA 1 chr11:57297868-57297888 ( 2) CAAGGTCG 1 chr9:37531749-37531769 ( 7) CAGAGTCA 1 chr6:43969347-43969367 ( 1) CAGTGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.17582 E= 5.0e-021 -1123 193 -160 -1123 199 -1123 -1123 -1123 165 -1123 -28 -1123 -259 -1123 186 -261 -1123 -1123 198 -1123 -159 -1123 -260 178 -1123 199 -260 -1123 193 -1123 -260 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 5.0e-021 0.000000 0.916667 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 0.791667 0.000000 0.208333 0.000000 0.041667 0.000000 0.916667 0.041667 0.000000 0.000000 1.000000 0.000000 0.083333 0.000000 0.041667 0.875000 0.000000 0.958333 0.041667 0.000000 0.958333 0.000000 0.041667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGGTCA MEME-2 regular expression -------------------------------------------------------------------------------- CA[AG]GGTCA -------------------------------------------------------------------------------- Time 3.64 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGTAAA MEME-3 width = 8 sites = 10 llr = 91 E-value = 8.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGTAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::3aaa pos.-specific C :7:2:::: probability G :1:8:::: matrix T a2a:7::: bits 2.1 * * *** 1.8 * * *** 1.6 * * *** 1.4 * * *** Relative 1.2 * ** *** Entropy 1.0 * ****** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTGTAAA consensus T CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:3776516-3776536 12 1.60e-05 agcgtccagg tctgtaaa a chr2:119745642-119745662 3 1.60e-05 cc tctgtaaa ggagggaaat chr19:10655226-10655246 10 1.60e-05 ttgcccctc tctgtaaa atg chr17:77895415-77895435 10 1.60e-05 ctttctcac tctgtaaa atg chr16:85481035-85481055 8 3.19e-05 tttctca tctgaaaa acggg chr12:111020405-11102042 13 6.39e-05 agtttcctcc tctctaaa chr1:27936268-27936288 10 6.39e-05 gtttcctct tttgtaaa atg chr2:85896810-85896830 10 8.07e-05 CACCAAGAC TGTGTAAA AAT chr1:40505094-40505114 1 1.13e-04 . tttgaaaa ctagagggca chr7:31728177-31728197 10 1.13e-04 AGTTCCTGT TCTCAAAA GAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:3776516-3776536 1.6e-05 11_[+3]_1 chr2:119745642-119745662 1.6e-05 2_[+3]_10 chr19:10655226-10655246 1.6e-05 9_[+3]_3 chr17:77895415-77895435 1.6e-05 9_[+3]_3 chr16:85481035-85481055 3.2e-05 7_[+3]_5 chr12:111020405-11102042 6.4e-05 12_[+3] chr1:27936268-27936288 6.4e-05 9_[+3]_3 chr2:85896810-85896830 8.1e-05 9_[+3]_3 chr1:40505094-40505114 0.00011 [+3]_12 chr7:31728177-31728197 0.00011 9_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGTAAA width=8 seqs=10 chr20:3776516-3776536 ( 12) TCTGTAAA 1 chr2:119745642-119745662 ( 3) TCTGTAAA 1 chr19:10655226-10655246 ( 10) TCTGTAAA 1 chr17:77895415-77895435 ( 10) TCTGTAAA 1 chr16:85481035-85481055 ( 8) TCTGAAAA 1 chr12:111020405-11102042 ( 13) TCTCTAAA 1 chr1:27936268-27936288 ( 10) TTTGTAAA 1 chr2:85896810-85896830 ( 10) TGTGTAAA 1 chr1:40505094-40505114 ( 1) TTTGAAAA 1 chr7:31728177-31728197 ( 10) TCTCAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.77211 E= 8.7e+001 -997 -997 -997 197 -997 154 -134 -35 -997 -997 -997 197 -997 -27 166 -997 25 -997 -997 146 199 -997 -997 -997 199 -997 -997 -997 199 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 8.7e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.700000 0.100000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.300000 0.000000 0.000000 0.700000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGTAAA MEME-3 regular expression -------------------------------------------------------------------------------- T[CT]T[GC][TA]AAA -------------------------------------------------------------------------------- Time 4.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CACYCCCT MEME-4 width = 8 sites = 5 llr = 50 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACYCCCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :8:::::: pos.-specific C a:a6aaa: probability G :2:::::: matrix T :::4:::a bits 2.1 * * **** 1.8 * * **** 1.6 * * **** 1.4 * * **** Relative 1.2 *** **** Entropy 1.0 ******** (14.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACCCCCT consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACYCCCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:56696322-56696342 1 1.25e-05 . CACCCCCT AGTGGCAAAG chr11:63913712-63913732 13 1.25e-05 GCAGCCACAG CACCCCCT chr6:41681590-41681610 3 2.58e-05 CA CACTCCCT GAAGGTCATA chr20:4800034-4800054 3 2.58e-05 TA CACTCCCT TTGTACTTGA chr12:103096489-10309650 7 3.83e-05 CATACC CGCCCCCT GGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACYCCCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:56696322-56696342 1.3e-05 [+4]_12 chr11:63913712-63913732 1.3e-05 12_[+4] chr6:41681590-41681610 2.6e-05 2_[+4]_10 chr20:4800034-4800054 2.6e-05 2_[+4]_10 chr12:103096489-10309650 3.8e-05 6_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACYCCCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACYCCCT width=8 seqs=5 chr12:56696322-56696342 ( 1) CACCCCCT 1 chr11:63913712-63913732 ( 13) CACCCCCT 1 chr6:41681590-41681610 ( 3) CACTCCCT 1 chr20:4800034-4800054 ( 3) CACTCCCT 1 chr12:103096489-10309650 ( 7) CGCCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACYCCCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.2866 E= 1.7e+003 -897 205 -897 -897 167 -897 -34 -897 -897 205 -897 -897 -897 132 -897 65 -897 205 -897 -897 -897 205 -897 -897 -897 205 -897 -897 -897 -897 -897 197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACYCCCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+003 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACYCCCT MEME-4 regular expression -------------------------------------------------------------------------------- C[AG]C[CT]CCCT -------------------------------------------------------------------------------- Time 5.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCATTTT MEME-5 width = 8 sites = 4 llr = 45 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCATTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C aaa::::: probability G :::::::: matrix T ::::aaaa bits 2.1 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCATTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:134543949-134543969 8 1.47e-05 CTCCCCT CCCATTTT CACAG chr12:93735366-93735386 4 1.47e-05 ggc cccatttt atagatgag chr3:53290343-53290363 5 1.47e-05 GAAT cccatttt agagatgg chr16:29986640-29986660 1 1.47e-05 . cccatttt acagttgaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:134543949-134543969 1.5e-05 7_[+5]_5 chr12:93735366-93735386 1.5e-05 3_[+5]_9 chr3:53290343-53290363 1.5e-05 4_[+5]_8 chr16:29986640-29986660 1.5e-05 [+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCATTTT width=8 seqs=4 chr9:134543949-134543969 ( 8) CCCATTTT 1 chr12:93735366-93735386 ( 4) CCCATTTT 1 chr3:53290343-53290363 ( 5) CCCATTTT 1 chr16:29986640-29986660 ( 1) CCCATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 2.7e+003 -865 205 -865 -865 -865 205 -865 -865 -865 205 -865 -865 199 -865 -865 -865 -865 -865 -865 197 -865 -865 -865 197 -865 -865 -865 197 -865 -865 -865 197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.7e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATTTT MEME-5 regular expression -------------------------------------------------------------------------------- CCCATTTT -------------------------------------------------------------------------------- Time 5.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:26801810-26801830 6.12e-01 20 chr1:76760343-76760363 1.98e-01 20 chr12:6561809-6561829 9.43e-01 20 chr1:102900171-102900191 5.70e-03 6_[+2(1.51e-05)]_6 chr16:29986640-29986660 1.36e-02 [+5(1.47e-05)]_12 chr21:44727104-44727124 1.72e-01 20 chr1:32879686-32879706 8.77e-03 5_[+1(6.01e-05)]_7 chr15:52513282-52513302 1.28e-02 1_[+2(4.53e-05)]_11 chr9:130547134-130547154 3.84e-01 20 chr8:78310681-78310701 5.11e-01 20 chr18:43246648-43246668 2.29e-01 20 chr11:77153930-77153950 1.84e-04 11_[+1(1.54e-05)]_1 chr12:104917289-10491730 3.11e-02 20 chr11:6689051-6689071 4.44e-01 20 chr7:31728177-31728197 5.77e-02 20 chr2:118228045-118228065 2.74e-03 9_[+1(1.54e-05)]_3 chr11:63913712-63913732 2.89e-02 12_[+4(1.25e-05)] chr20:46387574-46387594 8.89e-01 20 chr5:172337932-172337952 5.66e-01 20 chr17:43096156-43096176 7.79e-01 20 chr7:41173891-41173911 2.37e-01 20 chr13:93495982-93496002 9.43e-03 4_[+1(6.01e-05)]_8 chr3:159620541-159620561 2.01e-02 20 chr19:952944-952964 1.22e-02 6_[+1(1.54e-05)]_6 chr2:184213530-184213550 2.34e-01 20 chr19:6458564-6458584 6.73e-03 10_[+2(1.51e-05)]_2 chr8:54926701-54926721 4.30e-03 4_[+2(1.51e-05)]_8 chr20:7746040-7746060 1.48e-02 8_[+1(1.54e-05)]_4 chr9:98716374-98716394 8.90e-01 20 chr14:77424615-77424635 5.71e-01 20 chr16:10859844-10859864 1.85e-01 20 chr11:115867328-11586734 6.32e-01 20 chr6:165463056-165463076 4.73e-01 20 chr12:2261552-2261572 2.39e-02 6_[+1(4.47e-05)]_6 chr5:142814051-142814071 3.34e-01 20 chr13:52376370-52376390 2.00e-01 20 chr19:4078321-4078341 1.19e-03 8_[+1(1.54e-05)]_4 chr1:223723275-223723295 2.96e-01 20 chr7:101331553-101331573 7.41e-01 20 chr3:167806318-167806338 2.23e-03 3_[+2(1.51e-05)]_9 chr9:95857612-95857632 3.00e-01 20 chr19:52846984-52847004 9.57e-01 20 chr2:42064279-42064299 3.16e-02 6_[+2(1.51e-05)]_6 chr21:47979736-47979756 2.16e-01 20 chr4:146856976-146856996 8.12e-02 11_[+2(3.03e-05)]_1 chr13:42066599-42066619 2.64e-01 20 chr14:54917429-54917449 2.25e-01 20 chr6:11830491-11830511 2.86e-02 3_[+1(1.54e-05)]_9 chr14:61805334-61805354 1.20e-01 20 chr10:125087257-12508727 2.60e-01 20 chr7:92439690-92439710 5.88e-01 20 chr16:11464686-11464706 7.99e-01 20 chr7:27236013-27236033 6.95e-01 20 chr1:117612013-117612033 8.25e-02 11_[+1(6.01e-05)]_1 chrX:1655036-1655056 2.73e-01 20 chr15:93444743-93444763 6.67e-01 20 chr10:94027296-94027316 3.18e-01 20 chr15:70044035-70044055 3.02e-01 20 chr12:92937420-92937440 2.48e-01 20 chr18:4252108-4252128 2.06e-02 3_[+1(3.00e-05)]_9 chr9:95748652-95748672 6.01e-03 20 chr6:85060363-85060383 7.12e-01 20 chr20:328651-328671 6.61e-01 20 chr17:46725001-46725021 2.92e-01 20 chr8:37992039-37992059 5.43e-01 20 chr1:93459820-93459840 7.36e-01 20 chr9:76892568-76892588 9.77e-01 20 chr2:16938592-16938612 1.43e-02 2_[+1(3.00e-05)]_10 chr19:30195996-30196016 6.63e-01 20 chr10:99092848-99092868 8.80e-01 20 chr17:77895415-77895435 1.79e-03 9_[+3(1.60e-05)]_3 chr1:155036992-155037012 9.86e-01 20 chr21:43835817-43835837 6.46e-03 12_[+2(1.51e-05)] chr12:31905101-31905121 9.90e-01 20 chr18:4264483-4264503 4.87e-02 20 chr17:74402598-74402618 7.79e-01 20 chr6:42694485-42694505 3.93e-01 20 chr12:103096489-10309650 1.15e-02 6_[+4(3.83e-05)]_6 chr13:113457007-11345702 8.42e-03 5_[+1(1.54e-05)]_7 chr14:93998173-93998193 1.91e-02 3_[+1(1.54e-05)]_9 chr6:44306461-44306481 4.35e-01 20 chr3:45610493-45610513 1.50e-01 20 chr1:8824053-8824073 5.46e-01 20 chr2:45696521-45696541 2.75e-01 20 chr19:30302264-30302284 9.03e-01 20 chr19:2620889-2620909 8.90e-03 5_[+1(1.54e-05)]_7 chr22:47154897-47154917 8.23e-01 20 chr18:13629911-13629931 4.95e-02 20 chr3:58193895-58193915 4.22e-02 9_[+1(1.54e-05)]_3 chr6:21167224-21167244 3.11e-01 20 chr17:26870935-26870955 8.15e-01 20 chr7:33526407-33526427 1.44e-01 20 chr14:35099476-35099496 6.61e-01 20 chr12:56696322-56696342 7.92e-04 [+4(1.25e-05)]_12 chr1:53758475-53758495 1.03e-02 4_[+2(3.03e-05)]_8 chr2:184079209-184079229 3.31e-02 1_[+1(1.54e-05)]_11 chr14:35801034-35801054 6.84e-02 20 chr10:60828503-60828523 6.22e-01 20 chr15:59596517-59596537 3.22e-02 9_[+2(1.51e-05)]_3 chrX:6666752-6666772 1.70e-02 11_[+1(1.54e-05)]_1 chr18:44497977-44497997 5.22e-04 2_[+1(1.54e-05)]_10 chr3:152229870-152229890 3.47e-01 20 chrX:140000770-140000790 8.89e-03 5_[+1(4.47e-05)]_7 chr1:36814991-36815011 9.67e-01 20 chr3:197289023-197289043 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motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************