******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/EP300.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr8:91480049-91480069 1.0000 20 chr7:43348992-43349012 1.0000 20 chr2:137140046-137140066 1.0000 20 chrX:31247247-31247267 1.0000 20 chr4:160858951-160858971 1.0000 20 chr5:142382127-142382147 1.0000 20 chr2:64440203-64440223 1.0000 20 chr9:132891456-132891476 1.0000 20 chr10:97518613-97518633 1.0000 20 chr6:20837623-20837643 1.0000 20 chr5:142975089-142975109 1.0000 20 chr4:75579661-75579681 1.0000 20 chr9:140641345-140641365 1.0000 20 chr8:134513072-134513092 1.0000 20 chr2:191535450-191535470 1.0000 20 chr12:50581107-50581127 1.0000 20 chr8:29381338-29381358 1.0000 20 chr6:129076251-129076271 1.0000 20 chr6:138914584-138914604 1.0000 20 chr1:230259114-230259134 1.0000 20 chr18:4392069-4392089 1.0000 20 chr1:28218173-28218193 1.0000 20 chr1:234380442-234380462 1.0000 20 chr3:47267294-47267314 1.0000 20 chrX:78213389-78213409 1.0000 20 chr1:55754131-55754151 1.0000 20 chr2:136893945-136893965 1.0000 20 chr13:100028599-10002861 1.0000 20 chr18:67553498-67553518 1.0000 20 chr17:26385098-26385118 1.0000 20 chr11:109827904-10982792 1.0000 20 chr5:75878255-75878275 1.0000 20 chr15:53072584-53072604 1.0000 20 chr5:132010965-132010985 1.0000 20 chr1:118197466-118197486 1.0000 20 chr6:126120072-126120092 1.0000 20 chr3:116060983-116061003 1.0000 20 chr17:12334790-12334810 1.0000 20 chr7:1102014-1102034 1.0000 20 chr9:140657075-140657095 1.0000 20 chr21:39621351-39621371 1.0000 20 chr11:40205072-40205092 1.0000 20 chr2:46307328-46307348 1.0000 20 chr5:159886344-159886364 1.0000 20 chr9:74398234-74398254 1.0000 20 chr11:120796860-12079688 1.0000 20 chr1:82064425-82064445 1.0000 20 chr11:14786902-14786922 1.0000 20 chr10:20292885-20292905 1.0000 20 chr8:81235242-81235262 1.0000 20 chr12:66449871-66449891 1.0000 20 chr2:146967697-146967717 1.0000 20 chr18:9062297-9062317 1.0000 20 chr2:167583829-167583849 1.0000 20 chr9:140639435-140639455 1.0000 20 chr1:221330904-221330924 1.0000 20 chr20:49133332-49133352 1.0000 20 chr10:3916099-3916119 1.0000 20 chr11:79194023-79194043 1.0000 20 chr10:35484756-35484776 1.0000 20 chr21:43653250-43653270 1.0000 20 chr11:65239728-65239748 1.0000 20 chr8:37489290-37489310 1.0000 20 chr21:16135626-16135646 1.0000 20 chr21:39593728-39593748 1.0000 20 chr7:7291560-7291580 1.0000 20 chr14:23259620-23259640 1.0000 20 chr4:36082992-36083012 1.0000 20 chr6:45677710-45677730 1.0000 20 chr1:192508251-192508271 1.0000 20 chr2:46201317-46201337 1.0000 20 chr1:173300496-173300516 1.0000 20 chrX:9965808-9965828 1.0000 20 chr14:62547979-62547999 1.0000 20 chr4:55181906-55181926 1.0000 20 chr10:6534310-6534330 1.0000 20 chr6:159291025-159291045 1.0000 20 chr1:150584170-150584190 1.0000 20 chr7:25157581-25157601 1.0000 20 chr11:126570917-12657093 1.0000 20 chr2:136983738-136983758 1.0000 20 chr15:64540292-64540312 1.0000 20 chrX:1641281-1641301 1.0000 20 chr7:95344786-95344806 1.0000 20 chr2:111977127-111977147 1.0000 20 chr11:60078255-60078275 1.0000 20 chr14:40443441-40443461 1.0000 20 chr6:40687521-40687541 1.0000 20 chr2:39604884-39604904 1.0000 20 chr11:115944835-11594485 1.0000 20 chr13:82067448-82067468 1.0000 20 chr6:45678399-45678419 1.0000 20 chr4:146100775-146100795 1.0000 20 chr12:105035886-10503590 1.0000 20 chr2:79204888-79204908 1.0000 20 chr8:118452286-118452306 1.0000 20 chr12:80693886-80693906 1.0000 20 chr7:154629522-154629542 1.0000 20 chr6:149376862-149376882 1.0000 20 chr12:90156464-90156484 1.0000 20 chr11:42862201-42862221 1.0000 20 chrX:48796139-48796159 1.0000 20 chr5:156947028-156947048 1.0000 20 chr10:3894879-3894899 1.0000 20 chr14:71865842-71865862 1.0000 20 chr5:123370853-123370873 1.0000 20 chr18:4277431-4277451 1.0000 20 chr10:63747898-63747918 1.0000 20 chrX:115126388-115126408 1.0000 20 chr4:145468999-145469019 1.0000 20 chr8:80557975-80557995 1.0000 20 chr3:4892657-4892677 1.0000 20 chr4:114758813-114758833 1.0000 20 chr2:136996542-136996562 1.0000 20 chr5:158511266-158511286 1.0000 20 chrX:128920410-128920430 1.0000 20 chr10:95475345-95475365 1.0000 20 chr5:81470074-81470094 1.0000 20 chr12:129314542-12931456 1.0000 20 chr17:3977611-3977631 1.0000 20 chr8:100845410-100845430 1.0000 20 chr15:101507459-10150747 1.0000 20 chr7:22487563-22487583 1.0000 20 chr4:23335771-23335791 1.0000 20 chr7:104584923-104584943 1.0000 20 chr22:46171534-46171554 1.0000 20 chr10:69530502-69530522 1.0000 20 chr2:242755037-242755057 1.0000 20 chr6:130838735-130838755 1.0000 20 chr11:83324654-83324674 1.0000 20 chr2:242036586-242036606 1.0000 20 chr10:18688287-18688307 1.0000 20 chr16:56951095-56951115 1.0000 20 chr5:124244918-124244938 1.0000 20 chr10:109774782-10977480 1.0000 20 chr11:93451572-93451592 1.0000 20 chr15:34415271-34415291 1.0000 20 chr20:61609490-61609510 1.0000 20 chr4:96463114-96463134 1.0000 20 chr4:14167361-14167381 1.0000 20 chr9:132769880-132769900 1.0000 20 chr1:88616191-88616211 1.0000 20 chr4:74601105-74601125 1.0000 20 chr19:16560222-16560242 1.0000 20 chr6:132819869-132819889 1.0000 20 chr22:42427400-42427420 1.0000 20 chr5:73194972-73194992 1.0000 20 chr6:40116814-40116834 1.0000 20 chrX:23751013-23751033 1.0000 20 chr1:90146792-90146812 1.0000 20 chr9:94474495-94474515 1.0000 20 chr8:137242360-137242380 1.0000 20 chr3:5340329-5340349 1.0000 20 chr1:162331677-162331697 1.0000 20 chr1:66816013-66816033 1.0000 20 chr14:88461554-88461574 1.0000 20 chr4:38820222-38820242 1.0000 20 chr8:29378494-29378514 1.0000 20 chr11:15991654-15991674 1.0000 20 chr11:115867050-11586707 1.0000 20 chr4:80980056-80980076 1.0000 20 chr14:50549985-50550005 1.0000 20 chr12:90321074-90321094 1.0000 20 chr10:15183311-15183331 1.0000 20 chr8:146103565-146103585 1.0000 20 chr12:106467140-10646716 1.0000 20 chr1:192574332-192574352 1.0000 20 chr12:22562691-22562711 1.0000 20 chr11:95931176-95931196 1.0000 20 chr2:226141062-226141082 1.0000 20 chr17:76702505-76702525 1.0000 20 chr4:53508243-53508263 1.0000 20 chr3:32480625-32480645 1.0000 20 chr9:37144974-37144994 1.0000 20 chr6:154927720-154927740 1.0000 20 chr12:125404807-12540482 1.0000 20 chr18:52916996-52917016 1.0000 20 chr12:125405961-12540598 1.0000 20 chr3:187520875-187520895 1.0000 20 chr11:94202807-94202827 1.0000 20 chr6:74181782-74181802 1.0000 20 chr12:20047898-20047918 1.0000 20 chr8:123502110-123502130 1.0000 20 chr8:114467370-114467390 1.0000 20 chr18:20887051-20887071 1.0000 20 chr10:14784919-14784939 1.0000 20 chr3:105442217-105442237 1.0000 20 chr1:156458511-156458531 1.0000 20 chr11:82681023-82681043 1.0000 20 chr4:175459398-175459418 1.0000 20 chr10:73132896-73132916 1.0000 20 chr8:119294331-119294351 1.0000 20 chr7:43354173-43354193 1.0000 20 chr3:117198128-117198148 1.0000 20 chr2:64954330-64954350 1.0000 20 chr3:160384141-160384161 1.0000 20 chr6:108919638-108919658 1.0000 20 chr18:13611169-13611189 1.0000 20 chr2:196370590-196370610 1.0000 20 chr1:11046038-11046058 1.0000 20 chr1:63276729-63276749 1.0000 20 chr16:56945849-56945869 1.0000 20 chr12:24858868-24858888 1.0000 20 chr7:20369154-20369174 1.0000 20 chr12:103856639-10385665 1.0000 20 chr4:186231145-186231165 1.0000 20 chr10:63760168-63760188 1.0000 20 chr11:7533890-7533910 1.0000 20 chr5:106630050-106630070 1.0000 20 chr10:6309386-6309406 1.0000 20 chr11:117685687-11768570 1.0000 20 chr3:58020972-58020992 1.0000 20 chr5:158348611-158348631 1.0000 20 chr8:103896594-103896614 1.0000 20 chr1:150586181-150586201 1.0000 20 chr19:41769114-41769134 1.0000 20 chr5:55708972-55708992 1.0000 20 chr17:36134750-36134770 1.0000 20 chr6:150944223-150944243 1.0000 20 chr21:43955281-43955301 1.0000 20 chr4:42635750-42635770 1.0000 20 chr11:30364373-30364393 1.0000 20 chr13:111123703-11112372 1.0000 20 chr2:215602185-215602205 1.0000 20 chr10:74094885-74094905 1.0000 20 chr17:48469014-48469034 1.0000 20 chr2:76677514-76677534 1.0000 20 chr2:181199438-181199458 1.0000 20 chr4:159730877-159730897 1.0000 20 chr2:10550630-10550650 1.0000 20 chr10:112155726-11215574 1.0000 20 chr5:178971622-178971642 1.0000 20 chr7:17545857-17545877 1.0000 20 chr8:29413035-29413055 1.0000 20 chr4:47512682-47512702 1.0000 20 chr8:65607751-65607771 1.0000 20 chr12:25261104-25261124 1.0000 20 chr10:119416447-11941646 1.0000 20 chrX:118816437-118816457 1.0000 20 chr10:23012422-23012442 1.0000 20 chr4:139888663-139888683 1.0000 20 chr11:132227811-13222783 1.0000 20 chr11:131763223-13176324 1.0000 20 chr13:59527971-59527991 1.0000 20 chr3:14730972-14730992 1.0000 20 chr10:6183339-6183359 1.0000 20 chr18:13567126-13567146 1.0000 20 chr10:54725923-54725943 1.0000 20 chr10:18689415-18689435 1.0000 20 chr10:5623764-5623784 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_EP300/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/EP300.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.217 G 0.212 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.217 G 0.212 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCASTTCC MEME-1 width = 8 sites = 22 llr = 181 E-value = 4.4e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCASTTCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :a:41:88 probability G :::4:::: matrix T a::29a22 bits 2.2 * 2.0 * 1.8 * * 1.6 *** * Relative 1.3 *** **** Entropy 1.1 *** **** (11.9 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCACTTCC consensus G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASTTCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:54725923-54725943 7 1.45e-05 ttctct tcagttcc cttttc chr10:23012422-23012442 10 1.45e-05 TCACCACTC TCAGTTCC TGA chr1:63276729-63276749 11 1.45e-05 TTCATTTGTT TCAGTTCC CT chr8:146103565-146103585 9 1.45e-05 CAGTAATC TCAGTTCC TCTT chr8:80557975-80557995 10 1.45e-05 GTTTCTATT TCAGTTCC TCA chr18:9062297-9062317 1 1.45e-05 . TCAGTTCC TACTGGTCTG chr12:90321074-90321094 10 2.94e-05 TAGATTGTT TCACTTCC TCT chr11:93451572-93451592 1 2.94e-05 . TCACTTCC CCTTTTTAGG chr21:16135626-16135646 13 2.94e-05 GTTTCTACTT TCACTTCC chr10:3894879-3894899 12 4.91e-05 TAAAGCTGAC TCATTTCC T chr11:132227811-13222783 10 8.76e-05 GTGTCACAT TCAGTTTC GAG chr1:118197466-118197486 5 8.76e-05 TGGG TCAGTTTC ACTATTTA chr10:63760168-63760188 5 1.27e-04 GGGC TCACTTTC ACAAGCCC chr12:66449871-66449891 2 1.38e-04 C TCAGCTCC CAACATATTT chrX:1641281-1641301 5 1.49e-04 ttcc tcacctcC CACACACG chr6:74181782-74181802 9 2.01e-04 TCCAAGTT TCATTTCT ACAT chr4:74601105-74601125 9 2.01e-04 CAGTTCAG TCATTTCT AACA chr7:154629522-154629542 4 2.01e-04 TGC TCATTTCT TTCCTTTCC chr2:79204888-79204908 13 2.35e-04 CACCGATGGC CCACTTCC chr13:59527971-59527991 3 2.71e-04 tt tcccttcc tcttccccag chr8:29413035-29413055 5 2.98e-04 GGCG TCACTTTT CTGACGCA chr1:90146792-90146812 9 2.98e-04 TGTGGCTG TCACTTTT TCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASTTCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:54725923-54725943 1.5e-05 6_[+1]_6 chr10:23012422-23012442 1.5e-05 9_[+1]_3 chr1:63276729-63276749 1.5e-05 10_[+1]_2 chr8:146103565-146103585 1.5e-05 8_[+1]_4 chr8:80557975-80557995 1.5e-05 9_[+1]_3 chr18:9062297-9062317 1.5e-05 [+1]_12 chr12:90321074-90321094 2.9e-05 9_[+1]_3 chr11:93451572-93451592 2.9e-05 [+1]_12 chr21:16135626-16135646 2.9e-05 12_[+1] chr10:3894879-3894899 4.9e-05 11_[+1]_1 chr11:132227811-13222783 8.8e-05 9_[+1]_3 chr1:118197466-118197486 8.8e-05 4_[+1]_8 chr10:63760168-63760188 0.00013 4_[+1]_8 chr12:66449871-66449891 0.00014 1_[+1]_11 chrX:1641281-1641301 0.00015 4_[+1]_8 chr6:74181782-74181802 0.0002 8_[+1]_4 chr4:74601105-74601125 0.0002 8_[+1]_4 chr7:154629522-154629542 0.0002 3_[+1]_9 chr2:79204888-79204908 0.00023 12_[+1] chr13:59527971-59527991 0.00027 2_[+1]_10 chr8:29413035-29413055 0.0003 4_[+1]_8 chr1:90146792-90146812 0.0003 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASTTCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCASTTCC width=8 seqs=22 chr10:54725923-54725943 ( 7) TCAGTTCC 1 chr10:23012422-23012442 ( 10) TCAGTTCC 1 chr1:63276729-63276749 ( 11) TCAGTTCC 1 chr8:146103565-146103585 ( 9) TCAGTTCC 1 chr8:80557975-80557995 ( 10) TCAGTTCC 1 chr18:9062297-9062317 ( 1) TCAGTTCC 1 chr12:90321074-90321094 ( 10) TCACTTCC 1 chr11:93451572-93451592 ( 1) TCACTTCC 1 chr21:16135626-16135646 ( 13) TCACTTCC 1 chr10:3894879-3894899 ( 12) TCATTTCC 1 chr11:132227811-13222783 ( 10) TCAGTTTC 1 chr1:118197466-118197486 ( 5) TCAGTTTC 1 chr10:63760168-63760188 ( 5) TCACTTTC 1 chr12:66449871-66449891 ( 2) TCAGCTCC 1 chrX:1641281-1641301 ( 5) TCACCTCC 1 chr6:74181782-74181802 ( 9) TCATTTCT 1 chr4:74601105-74601125 ( 9) TCATTTCT 1 chr7:154629522-154629542 ( 4) TCATTTCT 1 chr2:79204888-79204908 ( 13) CCACTTCC 1 chr13:59527971-59527991 ( 3) TCCCTTCC 1 chr8:29413035-29413055 ( 5) TCACTTTT 1 chr1:90146792-90146812 ( 9) TCACTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASTTCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.22846 E= 4.4e-008 -1110 -225 -1110 173 -1110 221 -1110 -1110 175 -225 -1110 -1110 -1110 92 95 -66 -1110 -125 -1110 166 -1110 -1110 -1110 180 -1110 183 -1110 -34 -1110 183 -1110 -34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASTTCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.4e-008 0.000000 0.045455 0.000000 0.954545 0.000000 1.000000 0.000000 0.000000 0.954545 0.045455 0.000000 0.000000 0.000000 0.409091 0.409091 0.181818 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.772727 0.000000 0.227273 0.000000 0.772727 0.000000 0.227273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCASTTCC MEME-1 regular expression -------------------------------------------------------------------------------- TCA[CG]TT[CT][CT] -------------------------------------------------------------------------------- Time 2.20 secs. ******************************************************************************** ******************************************************************************** MOTIF RGGAACTG MEME-2 width = 8 sites = 10 llr = 95 E-value = 5.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGAACTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5::aa::: pos.-specific C ::2::7:: probability G 5a8::3:a matrix T ::::::a: bits 2.2 * * 2.0 * * 1.8 * ** ** 1.6 **** ** Relative 1.3 ******* Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAACTG consensus G C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAACTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:162331677-162331697 13 1.01e-05 CTTCACAATG GGGAACTG chr7:7291560-7291580 9 1.01e-05 CACAAAAG GGGAACTG AAAG chr4:159730877-159730897 12 2.37e-05 CACACTGAAA AGGAACTG A chr11:95931176-95931196 12 2.37e-05 CCAGGTCAAG AGGAACTG A chr12:105035886-10503590 7 2.37e-05 caaatg aggaactg ggtagg chr7:95344786-95344806 1 2.37e-05 . aggaactg aaactcacac chr6:40116814-40116834 5 3.37e-05 AATG GGGAAGTG AGAATCTG chr12:24858868-24858888 11 4.69e-05 cagatgtttg aggaagtg at chr13:100028599-10002861 10 5.73e-05 GTGACGAAA GGCAACTG ATG chr1:28218173-28218193 4 8.14e-05 CAT GGCAAGTG TGTCAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAACTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:162331677-162331697 1e-05 12_[+2] chr7:7291560-7291580 1e-05 8_[+2]_4 chr4:159730877-159730897 2.4e-05 11_[+2]_1 chr11:95931176-95931196 2.4e-05 11_[+2]_1 chr12:105035886-10503590 2.4e-05 6_[+2]_6 chr7:95344786-95344806 2.4e-05 [+2]_12 chr6:40116814-40116834 3.4e-05 4_[+2]_8 chr12:24858868-24858888 4.7e-05 10_[+2]_2 chr13:100028599-10002861 5.7e-05 9_[+2]_3 chr1:28218173-28218193 8.1e-05 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAACTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGAACTG width=8 seqs=10 chr1:162331677-162331697 ( 13) GGGAACTG 1 chr7:7291560-7291580 ( 9) GGGAACTG 1 chr4:159730877-159730897 ( 12) AGGAACTG 1 chr11:95931176-95931196 ( 12) AGGAACTG 1 chr12:105035886-10503590 ( 7) AGGAACTG 1 chr7:95344786-95344806 ( 1) AGGAACTG 1 chr6:40116814-40116834 ( 5) GGGAAGTG 1 chr12:24858868-24858888 ( 11) AGGAAGTG 1 chr13:100028599-10002861 ( 10) GGCAACTG 1 chr1:28218173-28218193 ( 4) GGCAAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAACTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.2854 E= 5.5e-002 82 -997 123 -997 -997 -997 223 -997 -997 -12 191 -997 182 -997 -997 -997 182 -997 -997 -997 -997 169 50 -997 -997 -997 -997 180 -997 -997 223 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAACTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.5e-002 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAACTG MEME-2 regular expression -------------------------------------------------------------------------------- [AG]G[GC]AA[CG]TG -------------------------------------------------------------------------------- Time 3.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TGRGGTTT MEME-3 width = 8 sites = 10 llr = 91 E-value = 1.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGRGGTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C ::::22:: probability G :a5a8::: matrix T a:2::8aa bits 2.2 * * 2.0 * * 1.8 ** * ** 1.6 ** ** ** Relative 1.3 ** ** ** Entropy 1.1 ** ***** (13.1 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGGGTTT consensus A CC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRGGTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:178971622-178971642 6 1.37e-05 TCTCT TGGGGTTT ACAACAG chr14:40443441-40443461 12 1.37e-05 CCTGAGTGAC TGGGGTTT G chr3:160384141-160384161 7 3.21e-05 cgtaat tgaggttt gacctt chr5:75878255-75878275 12 3.21e-05 agtcacacac tgaggttt t chr5:55708972-55708992 8 4.24e-05 GTGAGGC TGGGGCTT CTCTG chr17:36134750-36134770 8 6.10e-05 GGGAAGT TGTGGTTT CAGCA chr7:20369154-20369174 5 6.10e-05 ATGT TGTGGTTT ATTAACCA chr12:22562691-22562711 12 7.50e-05 AACAGTGATC TGGGCTTT G chr11:120796860-12079688 7 7.50e-05 CCTCTC TGGGCTTT GCCACA chr8:137242360-137242380 4 8.89e-05 TGT TGAGGCTT GAGGTCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRGGTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:178971622-178971642 1.4e-05 5_[+3]_7 chr14:40443441-40443461 1.4e-05 11_[+3]_1 chr3:160384141-160384161 3.2e-05 6_[+3]_6 chr5:75878255-75878275 3.2e-05 11_[+3]_1 chr5:55708972-55708992 4.2e-05 7_[+3]_5 chr17:36134750-36134770 6.1e-05 7_[+3]_5 chr7:20369154-20369174 6.1e-05 4_[+3]_8 chr12:22562691-22562711 7.5e-05 11_[+3]_1 chr11:120796860-12079688 7.5e-05 6_[+3]_6 chr8:137242360-137242380 8.9e-05 3_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRGGTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGRGGTTT width=8 seqs=10 chr5:178971622-178971642 ( 6) TGGGGTTT 1 chr14:40443441-40443461 ( 12) TGGGGTTT 1 chr3:160384141-160384161 ( 7) TGAGGTTT 1 chr5:75878255-75878275 ( 12) TGAGGTTT 1 chr5:55708972-55708992 ( 8) TGGGGCTT 1 chr17:36134750-36134770 ( 8) TGTGGTTT 1 chr7:20369154-20369174 ( 5) TGTGGTTT 1 chr12:22562691-22562711 ( 12) TGGGCTTT 1 chr11:120796860-12079688 ( 7) TGGGCTTT 1 chr8:137242360-137242380 ( 4) TGAGGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRGGTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 1.0e+001 -997 -997 -997 180 -997 -997 223 -997 8 -997 123 -52 -997 -997 223 -997 -997 -12 191 -997 -997 -12 -997 148 -997 -997 -997 180 -997 -997 -997 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRGGTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.0e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.300000 0.000000 0.500000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGRGGTTT MEME-3 regular expression -------------------------------------------------------------------------------- TG[GAT]G[GC][TC]TT -------------------------------------------------------------------------------- Time 4.36 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGAGRY MEME-4 width = 8 sites = 5 llr = 50 E-value = 8.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGAGRY MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:::a:4: pos.-specific C :::::::6 probability G :a:a:a6: matrix T ::a::::4 bits 2.2 * * * 2.0 * * * 1.8 ****** 1.6 ****** Relative 1.3 ****** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGAGGC consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGRY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:69530502-69530522 13 1.01e-05 ATTGTTGTGT AGTGAGGC chr11:42862201-42862221 9 1.01e-05 GTGAAACA AGTGAGGC ATCT chr6:159291025-159291045 13 1.01e-05 GTTGGTTTCC AGTGAGGC chr19:16560222-16560242 13 5.51e-05 ttaaaaccac agtgagat chr8:91480049-91480069 6 5.51e-05 AACCA AGTGAGAT TGCACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGRY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:69530502-69530522 1e-05 12_[+4] chr11:42862201-42862221 1e-05 8_[+4]_4 chr6:159291025-159291045 1e-05 12_[+4] chr19:16560222-16560242 5.5e-05 12_[+4] chr8:91480049-91480069 5.5e-05 5_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGRY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGAGRY width=8 seqs=5 chr10:69530502-69530522 ( 13) AGTGAGGC 1 chr11:42862201-42862221 ( 9) AGTGAGGC 1 chr6:159291025-159291045 ( 13) AGTGAGGC 1 chr19:16560222-16560242 ( 13) AGTGAGAT 1 chr8:91480049-91480069 ( 6) AGTGAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGRY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 8.2e+003 181 -897 -897 -897 -897 -897 223 -897 -897 -897 -897 180 -897 -897 223 -897 181 -897 -897 -897 -897 -897 223 -897 49 -897 150 -897 -897 147 -897 48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGRY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.2e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.600000 0.000000 0.400000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGRY MEME-4 regular expression -------------------------------------------------------------------------------- AGTGAG[GA][CT] -------------------------------------------------------------------------------- Time 5.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TSAGAATG MEME-5 width = 8 sites = 4 llr = 41 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSAGAATG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:aa:: pos.-specific C :5:::::: probability G :5:a:::a matrix T a:::::a: bits 2.2 * * 2.0 * * 1.8 * ****** 1.6 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCAGAATG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAGAATG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156458511-156458531 6 3.64e-05 GGGTT TCAGAATG ATGCTAT chr4:38820222-38820242 11 3.64e-05 cccattcacc tgagaatg ct chr2:146967697-146967717 5 3.64e-05 agag tgagaatg aaaaggag chr2:46307328-46307348 6 3.64e-05 AGTTC TCAGAATG ACTTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAGAATG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156458511-156458531 3.6e-05 5_[+5]_7 chr4:38820222-38820242 3.6e-05 10_[+5]_2 chr2:146967697-146967717 3.6e-05 4_[+5]_8 chr2:46307328-46307348 3.6e-05 5_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAGAATG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSAGAATG width=8 seqs=4 chr1:156458511-156458531 ( 6) TCAGAATG 1 chr4:38820222-38820242 ( 11) TGAGAATG 1 chr2:146967697-146967717 ( 5) TGAGAATG 1 chr2:46307328-46307348 ( 6) TCAGAATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAGAATG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.81503 E= 1.5e+004 -865 -865 -865 180 -865 120 123 -865 181 -865 -865 -865 -865 -865 223 -865 181 -865 -865 -865 181 -865 -865 -865 -865 -865 -865 180 -865 -865 223 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAGAATG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAGAATG MEME-5 regular expression -------------------------------------------------------------------------------- T[CG]AGAATG -------------------------------------------------------------------------------- Time 6.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:91480049-91480069 5.40e-05 5_[+4(5.51e-05)]_7 chr7:43348992-43349012 5.67e-01 20 chr2:137140046-137140066 1.33e-01 20 chrX:31247247-31247267 7.75e-01 20 chr4:160858951-160858971 1.44e-01 20 chr5:142382127-142382147 3.31e-01 20 chr2:64440203-64440223 4.28e-01 20 chr9:132891456-132891476 2.60e-01 20 chr10:97518613-97518633 6.13e-01 20 chr6:20837623-20837643 5.51e-01 20 chr5:142975089-142975109 6.03e-01 20 chr4:75579661-75579681 1.98e-01 20 chr9:140641345-140641365 4.02e-01 20 chr8:134513072-134513092 1.15e-01 20 chr2:191535450-191535470 4.66e-02 20 chr12:50581107-50581127 4.24e-01 20 chr8:29381338-29381358 8.10e-01 20 chr6:129076251-129076271 9.58e-01 20 chr6:138914584-138914604 7.36e-02 20 chr1:230259114-230259134 3.20e-01 20 chr18:4392069-4392089 5.95e-02 20 chr1:28218173-28218193 8.68e-03 3_[+2(8.14e-05)]_9 chr1:234380442-234380462 2.63e-01 20 chr3:47267294-47267314 3.08e-01 20 chrX:78213389-78213409 9.38e-01 20 chr1:55754131-55754151 7.37e-01 20 chr2:136893945-136893965 1.14e-01 20 chr13:100028599-10002861 3.99e-02 9_[+2(5.73e-05)]_3 chr18:67553498-67553518 3.78e-01 20 chr17:26385098-26385118 4.79e-01 20 chr11:109827904-10982792 8.70e-01 20 chr5:75878255-75878275 8.94e-04 11_[+3(3.21e-05)]_1 chr15:53072584-53072604 4.78e-01 20 chr5:132010965-132010985 9.00e-01 20 chr1:118197466-118197486 2.54e-02 4_[+1(8.76e-05)]_8 chr6:126120072-126120092 6.85e-01 20 chr3:116060983-116061003 6.92e-01 20 chr17:12334790-12334810 3.19e-01 20 chr7:1102014-1102034 8.88e-01 20 chr9:140657075-140657095 7.35e-02 20 chr21:39621351-39621371 7.90e-01 20 chr11:40205072-40205092 1.94e-01 20 chr2:46307328-46307348 2.74e-02 5_[+5(3.64e-05)]_7 chr5:159886344-159886364 1.07e-01 20 chr9:74398234-74398254 2.51e-01 20 chr11:120796860-12079688 4.71e-02 6_[+3(7.50e-05)]_6 chr1:82064425-82064445 2.76e-01 20 chr11:14786902-14786922 7.93e-01 20 chr10:20292885-20292905 8.82e-01 20 chr8:81235242-81235262 5.67e-01 20 chr12:66449871-66449891 1.83e-01 20 chr2:146967697-146967717 8.51e-04 4_[+5(3.64e-05)]_8 chr18:9062297-9062317 6.77e-03 [+1(1.45e-05)]_12 chr2:167583829-167583849 1.92e-02 20 chr9:140639435-140639455 3.09e-01 20 chr1:221330904-221330924 1.88e-01 20 chr20:49133332-49133352 7.08e-01 20 chr10:3916099-3916119 1.67e-01 20 chr11:79194023-79194043 2.20e-01 20 chr10:35484756-35484776 1.70e-01 20 chr21:43653250-43653270 2.11e-01 20 chr11:65239728-65239748 3.07e-01 20 chr8:37489290-37489310 3.41e-02 20 chr21:16135626-16135646 4.52e-02 12_[+1(2.94e-05)] chr21:39593728-39593748 1.78e-01 20 chr7:7291560-7291580 1.09e-02 8_[+2(1.01e-05)]_4 chr14:23259620-23259640 1.75e-01 20 chr4:36082992-36083012 2.82e-01 20 chr6:45677710-45677730 5.44e-01 20 chr1:192508251-192508271 8.02e-01 20 chr2:46201317-46201337 1.99e-01 20 chr1:173300496-173300516 2.28e-01 20 chrX:9965808-9965828 3.28e-01 20 chr14:62547979-62547999 4.59e-01 20 chr4:55181906-55181926 6.54e-01 20 chr10:6534310-6534330 1.18e-01 20 chr6:159291025-159291045 3.91e-03 12_[+4(1.01e-05)] chr1:150584170-150584190 4.21e-01 20 chr7:25157581-25157601 2.10e-02 20 chr11:126570917-12657093 6.39e-01 20 chr2:136983738-136983758 4.48e-01 20 chr15:64540292-64540312 2.41e-01 20 chrX:1641281-1641301 2.45e-01 20 chr7:95344786-95344806 9.99e-03 [+2(2.37e-05)]_12 chr2:111977127-111977147 7.64e-02 20 chr11:60078255-60078275 3.14e-01 20 chr14:40443441-40443461 6.06e-04 11_[+3(1.37e-05)]_1 chr6:40687521-40687541 1.97e-01 20 chr2:39604884-39604904 7.92e-01 20 chr11:115944835-11594485 6.95e-03 20 chr13:82067448-82067468 9.47e-01 20 chr6:45678399-45678419 8.61e-01 20 chr4:146100775-146100795 3.83e-01 20 chr12:105035886-10503590 1.89e-03 6_[+2(2.37e-05)]_6 chr2:79204888-79204908 1.47e-01 20 chr8:118452286-118452306 5.74e-01 20 chr12:80693886-80693906 9.31e-02 20 chr7:154629522-154629542 1.43e-01 20 chr6:149376862-149376882 8.77e-01 20 chr12:90156464-90156484 5.63e-02 20 chr11:42862201-42862221 2.43e-04 8_[+4(1.01e-05)]_4 chrX:48796139-48796159 1.82e-01 20 chr5:156947028-156947048 3.04e-01 20 chr10:3894879-3894899 6.20e-02 11_[+1(4.91e-05)]_1 chr14:71865842-71865862 6.21e-01 20 chr5:123370853-123370873 7.75e-01 20 chr18:4277431-4277451 8.79e-01 20 chr10:63747898-63747918 1.85e-01 20 chrX:115126388-115126408 2.69e-01 20 chr4:145468999-145469019 4.34e-01 20 chr8:80557975-80557995 4.26e-02 9_[+1(1.45e-05)]_3 chr3:4892657-4892677 9.83e-01 20 chr4:114758813-114758833 8.92e-01 20 chr2:136996542-136996562 1.83e-01 20 chr5:158511266-158511286 4.49e-01 20 chrX:128920410-128920430 1.04e-01 20 chr10:95475345-95475365 5.39e-01 20 chr5:81470074-81470094 9.91e-01 20 chr12:129314542-12931456 6.24e-01 20 chr17:3977611-3977631 4.72e-01 20 chr8:100845410-100845430 6.89e-01 20 chr15:101507459-10150747 9.83e-01 20 chr7:22487563-22487583 9.23e-01 20 chr4:23335771-23335791 5.54e-01 20 chr7:104584923-104584943 4.91e-01 20 chr22:46171534-46171554 1.61e-02 20 chr10:69530502-69530522 1.95e-03 12_[+4(1.01e-05)] chr2:242755037-242755057 6.54e-01 20 chr6:130838735-130838755 3.22e-02 20 chr11:83324654-83324674 2.68e-01 20 chr2:242036586-242036606 9.95e-01 20 chr10:18688287-18688307 4.20e-01 20 chr16:56951095-56951115 5.71e-01 20 chr5:124244918-124244938 7.74e-01 20 chr10:109774782-10977480 3.46e-01 20 chr11:93451572-93451592 6.64e-02 [+1(2.94e-05)]_12 chr15:34415271-34415291 7.62e-01 20 chr20:61609490-61609510 2.02e-01 20 chr4:96463114-96463134 1.81e-01 20 chr4:14167361-14167381 2.34e-01 20 chr9:132769880-132769900 7.63e-01 20 chr1:88616191-88616211 4.35e-01 20 chr4:74601105-74601125 1.24e-01 20 chr19:16560222-16560242 6.22e-02 12_[+4(5.51e-05)] chr6:132819869-132819889 1.39e-02 20 chr22:42427400-42427420 7.16e-01 20 chr5:73194972-73194992 2.95e-01 20 chr6:40116814-40116834 3.70e-05 4_[+2(3.37e-05)]_8 chrX:23751013-23751033 5.12e-01 20 chr1:90146792-90146812 1.42e-02 20 chr9:94474495-94474515 7.54e-01 20 chr8:137242360-137242380 5.16e-03 3_[+3(8.89e-05)]_9 chr3:5340329-5340349 1.17e-01 20 chr1:162331677-162331697 2.81e-04 12_[+2(1.01e-05)] chr1:66816013-66816033 5.99e-01 20 chr14:88461554-88461574 6.08e-01 20 chr4:38820222-38820242 1.13e-02 10_[+5(3.64e-05)]_2 chr8:29378494-29378514 2.40e-01 20 chr11:15991654-15991674 2.87e-01 20 chr11:115867050-11586707 2.57e-01 20 chr4:80980056-80980076 8.77e-01 20 chr14:50549985-50550005 2.68e-01 20 chr12:90321074-90321094 6.63e-02 9_[+1(2.94e-05)]_3 chr10:15183311-15183331 8.83e-01 20 chr8:146103565-146103585 2.88e-02 8_[+1(1.45e-05)]_4 chr12:106467140-10646716 4.27e-01 20 chr1:192574332-192574352 9.63e-01 20 chr12:22562691-22562711 2.68e-03 11_[+3(7.50e-05)]_1 chr11:95931176-95931196 1.47e-02 11_[+2(2.37e-05)]_1 chr2:226141062-226141082 6.75e-01 20 chr17:76702505-76702525 3.01e-01 20 chr4:53508243-53508263 6.85e-01 20 chr3:32480625-32480645 2.33e-01 20 chr9:37144974-37144994 1.62e-01 20 chr6:154927720-154927740 8.70e-01 20 chr12:125404807-12540482 4.30e-01 20 chr18:52916996-52917016 7.88e-01 20 chr12:125405961-12540598 4.88e-01 20 chr3:187520875-187520895 7.70e-01 20 chr11:94202807-94202827 1.61e-01 20 chr6:74181782-74181802 1.20e-01 20 chr12:20047898-20047918 1.56e-01 20 chr8:123502110-123502130 1.14e-01 20 chr8:114467370-114467390 3.16e-02 20 chr18:20887051-20887071 5.06e-01 20 chr10:14784919-14784939 9.85e-01 20 chr3:105442217-105442237 3.45e-01 20 chr1:156458511-156458531 4.46e-03 5_[+5(3.64e-05)]_7 chr11:82681023-82681043 8.05e-02 20 chr4:175459398-175459418 1.99e-01 20 chr10:73132896-73132916 1.16e-01 20 chr8:119294331-119294351 1.70e-01 20 chr7:43354173-43354193 8.40e-02 20 chr3:117198128-117198148 9.96e-01 20 chr2:64954330-64954350 7.69e-01 20 chr3:160384141-160384161 5.25e-04 6_[+3(3.21e-05)]_6 chr6:108919638-108919658 4.69e-01 20 chr18:13611169-13611189 5.59e-01 20 chr2:196370590-196370610 4.74e-02 20 chr1:11046038-11046058 9.35e-01 20 chr1:63276729-63276749 4.22e-02 10_[+1(1.45e-05)]_2 chr16:56945849-56945869 2.65e-03 20 chr12:24858868-24858888 1.58e-03 10_[+2(4.69e-05)]_2 chr7:20369154-20369174 5.29e-02 4_[+3(6.10e-05)]_8 chr12:103856639-10385665 7.26e-01 20 chr4:186231145-186231165 3.15e-01 20 chr10:63760168-63760188 1.29e-01 20 chr11:7533890-7533910 8.14e-01 20 chr5:106630050-106630070 3.35e-01 20 chr10:6309386-6309406 3.57e-02 20 chr11:117685687-11768570 5.16e-01 20 chr3:58020972-58020992 1.00e+00 20 chr5:158348611-158348631 9.38e-02 20 chr8:103896594-103896614 8.37e-01 20 chr1:150586181-150586201 6.49e-01 20 chr19:41769114-41769134 2.77e-01 20 chr5:55708972-55708992 3.05e-03 7_[+3(4.24e-05)]_5 chr17:36134750-36134770 3.91e-03 7_[+3(6.10e-05)]_5 chr6:150944223-150944243 4.61e-01 20 chr21:43955281-43955301 9.70e-01 20 chr4:42635750-42635770 4.66e-01 20 chr11:30364373-30364393 6.05e-01 20 chr13:111123703-11112372 1.68e-01 20 chr2:215602185-215602205 4.52e-01 20 chr10:74094885-74094905 1.38e-01 20 chr17:48469014-48469034 6.33e-01 20 chr2:76677514-76677534 3.08e-01 20 chr2:181199438-181199458 8.51e-02 20 chr4:159730877-159730897 1.15e-02 11_[+2(2.37e-05)]_1 chr2:10550630-10550650 1.25e-01 20 chr10:112155726-11215574 9.13e-01 20 chr5:178971622-178971642 1.57e-02 5_[+3(1.37e-05)]_7 chr7:17545857-17545877 2.95e-01 20 chr8:29413035-29413055 1.11e-01 20 chr4:47512682-47512702 2.90e-01 20 chr8:65607751-65607771 2.97e-01 20 chr12:25261104-25261124 3.63e-01 20 chr10:119416447-11941646 2.66e-01 20 chrX:118816437-118816457 6.52e-01 20 chr10:23012422-23012442 2.53e-02 9_[+1(1.45e-05)]_3 chr4:139888663-139888683 8.33e-01 20 chr11:132227811-13222783 3.71e-02 9_[+1(8.76e-05)]_3 chr11:131763223-13176324 6.41e-01 20 chr13:59527971-59527991 1.85e-01 20 chr3:14730972-14730992 8.12e-02 4_[+5(8.48e-05)]_8 chr10:6183339-6183359 6.88e-01 20 chr18:13567126-13567146 3.95e-01 20 chr10:54725923-54725943 4.43e-02 6_[+1(1.45e-05)]_6 chr10:18689415-18689435 1.63e-02 20 chr10:5623764-5623784 8.88e-02 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************