******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/E2F8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:36235815-36235835 1.0000 20 chr3:130465628-130465648 1.0000 20 chr7:23514197-23514217 1.0000 20 chr9:140022182-140022202 1.0000 20 chr11:9595098-9595118 1.0000 20 chr2:219432922-219432942 1.0000 20 chr6:37137542-37137562 1.0000 20 chr13:48877844-48877864 1.0000 20 chr22:38966079-38966099 1.0000 20 chr17:37558970-37558990 1.0000 20 chr1:155246971-155246991 1.0000 20 chrX:153707475-153707495 1.0000 20 chr6:90539489-90539509 1.0000 20 chr17:60501160-60501180 1.0000 20 chr9:94860409-94860429 1.0000 20 chr2:203103374-203103394 1.0000 20 chr2:174219411-174219431 1.0000 20 chr2:136288143-136288163 1.0000 20 chr8:128748413-128748433 1.0000 20 chr1:24307110-24307130 1.0000 20 chr11:74303628-74303648 1.0000 20 chr3:48595651-48595671 1.0000 20 chr7:100728627-100728647 1.0000 20 chr1:212209090-212209110 1.0000 20 chr13:34117077-34117097 1.0000 20 chr7:99156188-99156208 1.0000 20 chr2:58468570-58468590 1.0000 20 chr17:21002582-21002602 1.0000 20 chr3:186524194-186524214 1.0000 20 chr2:48010356-48010376 1.0000 20 chr2:166810703-166810723 1.0000 20 chr6:31632915-31632935 1.0000 20 chr12:4378647-4378667 1.0000 20 chr20:5743269-5743289 1.0000 20 chr3:127609664-127609684 1.0000 20 chr17:40333449-40333469 1.0000 20 chr12:122124979-12212499 1.0000 20 chr15:44119239-44119259 1.0000 20 chr6:57182464-57182484 1.0000 20 chr17:30263759-30263779 1.0000 20 chr6:6584269-6584289 1.0000 20 chr12:31226945-31226965 1.0000 20 chr20:5100007-5100027 1.0000 20 chr12:56843031-56843051 1.0000 20 chr1:243265187-243265207 1.0000 20 chr22:42342834-42342854 1.0000 20 chr11:75863344-75863364 1.0000 20 chr10:74386084-74386104 1.0000 20 chr16:67281618-67281638 1.0000 20 chrX:48659829-48659849 1.0000 20 chr19:47292108-47292128 1.0000 20 chr1:46050550-46050570 1.0000 20 chr15:40987360-40987380 1.0000 20 chr1:151253861-151253881 1.0000 20 chr9:140485195-140485215 1.0000 20 chr7:100136436-100136456 1.0000 20 chr7:128116715-128116735 1.0000 20 chr11:17297845-17297865 1.0000 20 chr17:76183162-76183182 1.0000 20 chr10:115614152-11561417 1.0000 20 chr5:68485388-68485408 1.0000 20 chr17:58677172-58677192 1.0000 20 chr1:155197553-155197573 1.0000 20 chr6:159420862-159420882 1.0000 20 chr16:29984701-29984721 1.0000 20 chr11:58874713-58874733 1.0000 20 chr12:109535857-10953587 1.0000 20 chrX:55187340-55187360 1.0000 20 chr14:68286472-68286492 1.0000 20 chr19:16222057-16222077 1.0000 20 chr11:28129758-28129778 1.0000 20 chr3:132379028-132379048 1.0000 20 chr1:226595175-226595195 1.0000 20 chr12:123011775-12301179 1.0000 20 chr16:30103965-30103985 1.0000 20 chr17:42264303-42264323 1.0000 20 chr16:85722570-85722590 1.0000 20 chr7:26241034-26241054 1.0000 20 chr1:714075-714095 1.0000 20 chr16:74330482-74330502 1.0000 20 chr18:77166048-77166068 1.0000 20 chr22:35796003-35796023 1.0000 20 chr17:40729717-40729737 1.0000 20 chr4:113558033-113558053 1.0000 20 chr1:26232264-26232284 1.0000 20 chr2:172779012-172779032 1.0000 20 chr1:170501454-170501474 1.0000 20 chr12:57146010-57146030 1.0000 20 chr7:21985728-21985748 1.0000 20 chr2:177800446-177800466 1.0000 20 chr14:74551656-74551676 1.0000 20 chr1:23857745-23857765 1.0000 20 chr17:57232231-57232251 1.0000 20 chr17:46048668-46048688 1.0000 20 chr2:132250604-132250624 1.0000 20 chr12:56521804-56521824 1.0000 20 chr8:95907841-95907861 1.0000 20 chr6:37467607-37467627 1.0000 20 chr1:91966551-91966571 1.0000 20 chr15:64673680-64673700 1.0000 20 chr16:84760489-84760509 1.0000 20 chr11:111472708-11147272 1.0000 20 chr9:125675600-125675620 1.0000 20 chr6:97731041-97731061 1.0000 20 chr17:29058408-29058428 1.0000 20 chr19:35168136-35168156 1.0000 20 chr19:50490581-50490601 1.0000 20 chr10:69523967-69523987 1.0000 20 chr9:21802532-21802552 1.0000 20 chr7:30544432-30544452 1.0000 20 chr17:7232839-7232859 1.0000 20 chr2:47630205-47630225 1.0000 20 chr2:136634094-136634114 1.0000 20 chr16:75466934-75466954 1.0000 20 chr10:15001885-15001905 1.0000 20 chr15:91473439-91473459 1.0000 20 chr1:155112997-155113017 1.0000 20 chr1:1590519-1590539 1.0000 20 chr7:148581712-148581732 1.0000 20 chr13:114103646-11410366 1.0000 20 chr19:10305300-10305320 1.0000 20 chr2:216979745-216979765 1.0000 20 chr14:64854832-64854852 1.0000 20 chr17:56084980-56085000 1.0000 20 chr19:48867558-48867578 1.0000 20 chr12:98910372-98910392 1.0000 20 chr2:216866671-216866691 1.0000 20 chr12:31479258-31479278 1.0000 20 chr15:44117083-44117103 1.0000 20 chr17:59940879-59940899 1.0000 20 chr8:48873266-48873286 1.0000 20 chrX:85302422-85302442 1.0000 20 chr17:37844371-37844391 1.0000 20 chr5:137549157-137549177 1.0000 20 chr1:1655832-1655852 1.0000 20 chrX:102942104-102942124 1.0000 20 chr15:66649056-66649076 1.0000 20 chr19:48707336-48707356 1.0000 20 chr3:10028557-10028577 1.0000 20 chr15:48624354-48624374 1.0000 20 chr19:19314079-19314099 1.0000 20 chr2:203130384-203130404 1.0000 20 chr7:6865960-6865980 1.0000 20 chr7:73668708-73668728 1.0000 20 chr3:121264825-121264845 1.0000 20 chr16:20817847-20817867 1.0000 20 chr11:45939453-45939473 1.0000 20 chr19:15375057-15375077 1.0000 20 chr1:206753453-206753473 1.0000 20 chr17:38444118-38444138 1.0000 20 chr19:5978371-5978391 1.0000 20 chr19:36103589-36103609 1.0000 20 chr5:140079986-140080006 1.0000 20 chr4:39979801-39979821 1.0000 20 chr2:136743533-136743553 1.0000 20 chr6:28220053-28220073 1.0000 20 chr8:30891408-30891428 1.0000 20 chr19:46282692-46282712 1.0000 20 chr8:125654152-125654172 1.0000 20 chr21:38630663-38630683 1.0000 20 chr22:27068787-27068807 1.0000 20 chr15:89164343-89164363 1.0000 20 chr16:31085696-31085716 1.0000 20 chr9:130700155-130700175 1.0000 20 chr4:41937153-41937173 1.0000 20 chr11:125495854-12549587 1.0000 20 chr10:12110616-12110636 1.0000 20 chr3:48229938-48229958 1.0000 20 chr3:127317242-127317262 1.0000 20 chr7:7680571-7680591 1.0000 20 chr3:50265034-50265054 1.0000 20 chr2:219524312-219524332 1.0000 20 chr3:133380835-133380855 1.0000 20 chr4:120375789-120375809 1.0000 20 chr2:25016351-25016371 1.0000 20 chr10:70715841-70715861 1.0000 20 chr19:49164386-49164406 1.0000 20 chr19:13262807-13262827 1.0000 20 chr15:41166554-41166574 1.0000 20 chr4:39367950-39367970 1.0000 20 chr3:101280633-101280653 1.0000 20 chr11:71639584-71639604 1.0000 20 chrX:153775828-153775848 1.0000 20 chr12:123011974-12301199 1.0000 20 chr6:89855505-89855525 1.0000 20 chr1:172366507-172366527 1.0000 20 chr17:75321378-75321398 1.0000 20 chr19:50887652-50887672 1.0000 20 chr5:93954330-93954350 1.0000 20 chr7:99097897-99097917 1.0000 20 chr12:69753922-69753942 1.0000 20 chr18:72265021-72265041 1.0000 20 chr8:33370680-33370700 1.0000 20 chr8:141522213-141522233 1.0000 20 chr11:47236596-47236616 1.0000 20 chr3:185655938-185655958 1.0000 20 chr5:180237347-180237367 1.0000 20 chr19:50862214-50862234 1.0000 20 chr22:47010131-47010151 1.0000 20 chr14:23388111-23388131 1.0000 20 chr3:129118425-129118445 1.0000 20 chr9:91933880-91933900 1.0000 20 chr6:17706185-17706205 1.0000 20 chr13:34392210-34392230 1.0000 20 chr7:100025818-100025838 1.0000 20 chr14:51706607-51706627 1.0000 20 chr15:40397256-40397276 1.0000 20 chr3:15469070-15469090 1.0000 20 chr17:26989089-26989109 1.0000 20 chr5:1783512-1783532 1.0000 20 chr15:57998773-57998793 1.0000 20 chr6:4021735-4021755 1.0000 20 chr17:41277460-41277480 1.0000 20 chr18:2571477-2571497 1.0000 20 chr19:56111492-56111512 1.0000 20 chr19:47777094-47777114 1.0000 20 chr22:39919076-39919096 1.0000 20 chr7:120590674-120590694 1.0000 20 chr7:99699100-99699120 1.0000 20 chr15:44092924-44092944 1.0000 20 chr4:24585202-24585222 1.0000 20 chr13:73356088-73356108 1.0000 20 chr22:19467283-19467303 1.0000 20 chr8:124408897-124408917 1.0000 20 chr11:19262605-19262625 1.0000 20 chr1:36851747-36851767 1.0000 20 chr2:242823406-242823426 1.0000 20 chr1:27191713-27191733 1.0000 20 chr2:230787559-230787579 1.0000 20 chr6:31126217-31126237 1.0000 20 chr9:123342653-123342673 1.0000 20 chr1:111506835-111506855 1.0000 20 chrX:15693387-15693407 1.0000 20 chr3:53926016-53926036 1.0000 20 chr7:45808652-45808672 1.0000 20 chr7:99613142-99613162 1.0000 20 chr5:40756176-40756196 1.0000 20 chr6:160210811-160210831 1.0000 20 chr14:35761616-35761636 1.0000 20 chr22:31556086-31556106 1.0000 20 chr6:27113925-27113945 1.0000 20 chr7:86781596-86781616 1.0000 20 chr12:67664167-67664187 1.0000 20 chr6:20402050-20402070 1.0000 20 chr1:154155724-154155744 1.0000 20 chr16:72699068-72699088 1.0000 20 chr9:104296078-104296098 1.0000 20 chr12:21654533-21654553 1.0000 20 chr9:137030009-137030029 1.0000 20 chr17:56405859-56405879 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_E2F8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/E2F8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.196 C 0.294 G 0.295 T 0.216 Background letter frequencies (from file dataset with add-one prior applied): A 0.196 C 0.294 G 0.295 T 0.216 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTCCCG MEME-1 width = 8 sites = 25 llr = 215 E-value = 2.1e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTCCCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::2:a991 probability G 2::::1:9 matrix T 8a8a::1: bits 2.4 2.1 * 1.9 * ** 1.6 * ** Relative 1.4 **** * Entropy 1.2 ******** (12.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCCCG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCCCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:48873266-48873286 4 1.63e-05 CAG TTTTCCCG CGAAAACGC chr12:56521804-56521824 12 1.63e-05 CCTTTCTTCC TTTTCCCG C chr16:85722570-85722590 13 1.63e-05 GCGGCCGCCG TTTTCCCG chr7:128116715-128116735 11 1.63e-05 CCGCCACCCT TTTTCCCG CC chr6:57182464-57182484 11 1.63e-05 ACCGTTTGTG TTTTCCCG AG chr17:40333449-40333469 2 1.63e-05 G TTTTCCCG CGCGGCGTCC chr3:127609664-127609684 3 1.63e-05 at ttttcccg ccaaaccact chr17:60501160-60501180 10 1.63e-05 CGCCACCCT TTTTCCCG CCC chr17:37558970-37558990 5 1.63e-05 GGCG TTTTCCCG ATGGAAAC chr5:1783512-1783532 3 3.85e-05 CC TTCTCCCG CCATTACAGC chr4:39367950-39367970 3 3.85e-05 AC TTCTCCCG CGAAGTGCAA chr6:37467607-37467627 10 3.85e-05 ACGCCCAGA TTCTCCCG CTT chr4:113558033-113558053 5 3.85e-05 GAAT TTCTCCCG CGAAACAA chr12:123011775-12301179 11 3.85e-05 GGGTTTAGTG TTCTCCCG CC chr10:70715841-70715861 2 5.05e-05 C TTTTCCTG TGCTTCCTGC chr3:127317242-127317262 13 8.92e-05 CGTGAACCAC TTTTCGCG chr11:74303628-74303648 5 8.92e-05 AGAC GTTTCCCG CCGGCGGG chr12:123011974-12301199 8 1.05e-04 CCTGTTG TTTTCCCC TTGAC chr10:74386084-74386104 5 1.05e-04 GTTT TTTTCCCC TCCACAAG chr20:5743269-5743289 13 1.20e-04 GGCACTTGTC ATTTCCCG chr7:73668708-73668728 5 1.89e-04 TCCA TTCTCGCG CCTCCTCT chr12:21654533-21654553 7 2.11e-04 GTAAAA TCTTCCCG CCAGCC chr6:27113925-27113945 10 2.40e-04 TTAACACAA GTTTCCTG CAC chr6:6584269-6584289 6 2.40e-04 GCATG GTTTCCTG ACTTCTA chr16:31085696-31085716 2 2.84e-04 A GTTTCGCG GGGAAGCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCCCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:48873266-48873286 1.6e-05 3_[+1]_9 chr12:56521804-56521824 1.6e-05 11_[+1]_1 chr16:85722570-85722590 1.6e-05 12_[+1] chr7:128116715-128116735 1.6e-05 10_[+1]_2 chr6:57182464-57182484 1.6e-05 10_[+1]_2 chr17:40333449-40333469 1.6e-05 1_[+1]_11 chr3:127609664-127609684 1.6e-05 2_[+1]_10 chr17:60501160-60501180 1.6e-05 9_[+1]_3 chr17:37558970-37558990 1.6e-05 4_[+1]_8 chr5:1783512-1783532 3.9e-05 2_[+1]_10 chr4:39367950-39367970 3.9e-05 2_[+1]_10 chr6:37467607-37467627 3.9e-05 9_[+1]_3 chr4:113558033-113558053 3.9e-05 4_[+1]_8 chr12:123011775-12301179 3.9e-05 10_[+1]_2 chr10:70715841-70715861 5.1e-05 1_[+1]_11 chr3:127317242-127317262 8.9e-05 12_[+1] chr11:74303628-74303648 8.9e-05 4_[+1]_8 chr12:123011974-12301199 0.00011 7_[+1]_5 chr10:74386084-74386104 0.00011 4_[+1]_8 chr20:5743269-5743289 0.00012 12_[+1] chr7:73668708-73668728 0.00019 4_[+1]_8 chr12:21654533-21654553 0.00021 6_[+1]_6 chr6:27113925-27113945 0.00024 9_[+1]_3 chr6:6584269-6584289 0.00024 5_[+1]_7 chr16:31085696-31085716 0.00028 1_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCCCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTCCCG width=8 seqs=25 chr8:48873266-48873286 ( 4) TTTTCCCG 1 chr12:56521804-56521824 ( 12) TTTTCCCG 1 chr16:85722570-85722590 ( 13) TTTTCCCG 1 chr7:128116715-128116735 ( 11) TTTTCCCG 1 chr6:57182464-57182484 ( 11) TTTTCCCG 1 chr17:40333449-40333469 ( 2) TTTTCCCG 1 chr3:127609664-127609684 ( 3) TTTTCCCG 1 chr17:60501160-60501180 ( 10) TTTTCCCG 1 chr17:37558970-37558990 ( 5) TTTTCCCG 1 chr5:1783512-1783532 ( 3) TTCTCCCG 1 chr4:39367950-39367970 ( 3) TTCTCCCG 1 chr6:37467607-37467627 ( 10) TTCTCCCG 1 chr4:113558033-113558053 ( 5) TTCTCCCG 1 chr12:123011775-12301179 ( 11) TTCTCCCG 1 chr10:70715841-70715861 ( 2) TTTTCCTG 1 chr3:127317242-127317262 ( 13) TTTTCGCG 1 chr11:74303628-74303648 ( 5) GTTTCCCG 1 chr12:123011974-12301199 ( 8) TTTTCCCC 1 chr10:74386084-74386104 ( 5) TTTTCCCC 1 chr20:5743269-5743289 ( 13) ATTTCCCG 1 chr7:73668708-73668728 ( 5) TTCTCGCG 1 chr12:21654533-21654553 ( 7) TCTTCCCG 1 chr6:27113925-27113945 ( 10) GTTTCCTG 1 chr6:6584269-6584289 ( 6) GTTTCCTG 1 chr16:31085696-31085716 ( 2) GTTTCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCCCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.15019 E= 2.1e-016 -229 -1129 -88 189 -1129 -287 -1129 215 -1129 -29 -1129 182 -1129 -1129 -1129 221 -1129 177 -1129 -1129 -1129 158 -129 -1129 -1129 158 -1129 -85 -1129 -188 164 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCCCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.1e-016 0.040000 0.000000 0.160000 0.800000 0.000000 0.040000 0.000000 0.960000 0.000000 0.240000 0.000000 0.760000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.880000 0.120000 0.000000 0.000000 0.880000 0.000000 0.120000 0.000000 0.080000 0.920000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCCCG MEME-1 regular expression -------------------------------------------------------------------------------- TT[TC]TCCCG -------------------------------------------------------------------------------- Time 3.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGAAAA MEME-2 width = 8 sites = 12 llr = 117 E-value = 8.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::aa99 pos.-specific C 8:2:::1: probability G 3a8a:::: matrix T :::::::1 bits 2.4 ** 2.1 ** 1.9 **** 1.6 * ***** Relative 1.4 * ***** Entropy 1.2 ******* (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGGAAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:40756176-40756196 4 1.11e-05 GCG CGGGAAAA TGAGGCTGC chr13:73356088-73356108 6 1.11e-05 TCTCG CGGGAAAA TGCCGAG chr11:125495854-12549587 2 1.11e-05 G CGGGAAAA GCGCTGCATT chr5:68485388-68485408 9 1.11e-05 TTTAGTGG CGGGAAAA GCGA chr2:166810703-166810723 3 1.11e-05 CG CGGGAAAA AGCGGTCAAC chr8:128748413-128748433 1 1.11e-05 . CGGGAAAA AGAACGGAGG chr19:50887652-50887672 5 2.23e-05 TAGA GGGGAAAA AGGGAGTT chrX:48659829-48659849 1 2.23e-05 . GGGGAAAA GGTAAGATGC chr20:5100007-5100027 13 3.34e-05 GTGACTTTGG CGCGAAAA chr6:20402050-20402070 8 4.57e-05 AAGCCGG CGGGAAAT CCGAG chr16:74330482-74330502 1 5.68e-05 . GGCGAAAA GCCTCTGCAG chr1:26232264-26232284 12 7.35e-05 GGGCAGGCCC CGGGAACA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:40756176-40756196 1.1e-05 3_[+2]_9 chr13:73356088-73356108 1.1e-05 5_[+2]_7 chr11:125495854-12549587 1.1e-05 1_[+2]_11 chr5:68485388-68485408 1.1e-05 8_[+2]_4 chr2:166810703-166810723 1.1e-05 2_[+2]_10 chr8:128748413-128748433 1.1e-05 [+2]_12 chr19:50887652-50887672 2.2e-05 4_[+2]_8 chrX:48659829-48659849 2.2e-05 [+2]_12 chr20:5100007-5100027 3.3e-05 12_[+2] chr6:20402050-20402070 4.6e-05 7_[+2]_5 chr16:74330482-74330502 5.7e-05 [+2]_12 chr1:26232264-26232284 7.4e-05 11_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGAAAA width=8 seqs=12 chr5:40756176-40756196 ( 4) CGGGAAAA 1 chr13:73356088-73356108 ( 6) CGGGAAAA 1 chr11:125495854-12549587 ( 2) CGGGAAAA 1 chr5:68485388-68485408 ( 9) CGGGAAAA 1 chr2:166810703-166810723 ( 3) CGGGAAAA 1 chr8:128748413-128748433 ( 1) CGGGAAAA 1 chr19:50887652-50887672 ( 5) GGGGAAAA 1 chrX:48659829-48659849 ( 1) GGGGAAAA 1 chr20:5100007-5100027 ( 13) CGCGAAAA 1 chr6:20402050-20402070 ( 8) CGGGAAAT 1 chr16:74330482-74330502 ( 1) GGCGAAAA 1 chr1:26232264-26232284 ( 12) CGGGAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.17831 E= 8.5e-006 -1023 135 -24 -1023 -1023 -1023 176 -1023 -1023 -82 150 -1023 -1023 -1023 176 -1023 235 -1023 -1023 -1023 235 -1023 -1023 -1023 223 -182 -1023 -1023 223 -1023 -1023 -137 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 8.5e-006 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.916667 0.000000 0.000000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGAAAA MEME-2 regular expression -------------------------------------------------------------------------------- [CG]GGGAAAA -------------------------------------------------------------------------------- Time 4.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAVTTT MEME-3 width = 8 sites = 13 llr = 110 E-value = 5.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAVTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::aa42:: pos.-specific C ::::222: probability G 9a::2::: matrix T 1:::258a bits 2.4 ** 2.1 ** * 1.9 ** * 1.6 *** * Relative 1.4 **** ** Entropy 1.2 **** ** (12.2 bits) 0.9 **** ** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel GGAAATTT consensus CAC sequence GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAVTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:48624354-48624374 1 6.60e-06 . GGAAATTT CGGTTTTGGC chr3:129118425-129118445 1 1.26e-05 . GGAAAATT TATCTTACCT chr4:24585202-24585222 2 3.24e-05 C GGAAGTTT GCTAGTATCT chr6:31632915-31632935 4 3.24e-05 GCT GGAACTTT TTCAATAGT chr19:49164386-49164406 2 3.97e-05 T GGAATTTT CTAGAAATCT chr12:67664167-67664187 1 4.87e-05 . GGAAACTT CGCTCATAGG chr2:203130384-203130404 1 7.57e-05 . GGAACATT CTGGAAGTGA chr22:31556086-31556106 1 1.09e-04 . GGAACCTT AGAGCTTCAG chr16:31085696-31085716 11 1.09e-04 AGTTTCGCGG GGAAGCTT TT chr7:100136436-100136456 3 1.24e-04 TT TGAAATTT GCCGGGAATT chr14:51706607-51706627 10 1.32e-04 CATTTAATT GGAAAACT GCT chr6:28220053-28220073 3 1.59e-04 CA GGAAGTCT CGATGGGAAC chr15:40987360-40987380 10 1.69e-04 GGTTTGGCG GGAATTCT GAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAVTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:48624354-48624374 6.6e-06 [+3]_12 chr3:129118425-129118445 1.3e-05 [+3]_12 chr4:24585202-24585222 3.2e-05 1_[+3]_11 chr6:31632915-31632935 3.2e-05 3_[+3]_9 chr19:49164386-49164406 4e-05 1_[+3]_11 chr12:67664167-67664187 4.9e-05 [+3]_12 chr2:203130384-203130404 7.6e-05 [+3]_12 chr22:31556086-31556106 0.00011 [+3]_12 chr16:31085696-31085716 0.00011 10_[+3]_2 chr7:100136436-100136456 0.00012 2_[+3]_10 chr14:51706607-51706627 0.00013 9_[+3]_3 chr6:28220053-28220073 0.00016 2_[+3]_10 chr15:40987360-40987380 0.00017 9_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAVTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAVTTT width=8 seqs=13 chr15:48624354-48624374 ( 1) GGAAATTT 1 chr3:129118425-129118445 ( 1) GGAAAATT 1 chr4:24585202-24585222 ( 2) GGAAGTTT 1 chr6:31632915-31632935 ( 4) GGAACTTT 1 chr19:49164386-49164406 ( 2) GGAATTTT 1 chr12:67664167-67664187 ( 1) GGAAACTT 1 chr2:203130384-203130404 ( 1) GGAACATT 1 chr22:31556086-31556106 ( 1) GGAACCTT 1 chr16:31085696-31085716 ( 11) GGAAGCTT 1 chr7:100136436-100136456 ( 3) TGAAATTT 1 chr14:51706607-51706627 ( 10) GGAAAACT 1 chr6:28220053-28220073 ( 3) GGAAGTCT 1 chr15:40987360-40987380 ( 10) GGAATTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAVTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.12759 E= 5.9e+000 -1035 -1035 165 -149 -1035 -1035 176 -1035 235 -1035 -1035 -1035 235 -1035 -1035 -1035 97 -35 -35 -49 24 -35 -1035 132 -1035 -35 -1035 183 -1035 -1035 -1035 221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAVTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.9e+000 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.384615 0.230769 0.230769 0.153846 0.230769 0.230769 0.000000 0.538462 0.000000 0.230769 0.000000 0.769231 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAVTTT MEME-3 regular expression -------------------------------------------------------------------------------- GGAA[ACG][TAC][TC]T -------------------------------------------------------------------------------- Time 5.04 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAAAACA MEME-4 width = 8 sites = 5 llr = 51 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAAAACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 84aaaa:8 pos.-specific C 2:::::8: probability G :6:::::: matrix T ::::::22 bits 2.4 **** 2.1 **** 1.9 **** 1.6 **** * Relative 1.4 * **** * Entropy 1.2 * ****** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAACA consensus CA TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:85302422-85302442 5 8.18e-06 ACAG AAAAAACA GAAACAAG chr9:125675600-125675620 1 8.18e-06 . AGAAAACA CATCCGGTGC chr6:17706185-17706205 11 1.42e-05 AATCCCCGCC AAAAAATA AA chr7:120590674-120590694 9 2.32e-05 GAGGAGGA AGAAAACT ACAT chr7:99097897-99097917 1 3.55e-05 . CGAAAACA TCCCGTGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:85302422-85302442 8.2e-06 4_[+4]_8 chr9:125675600-125675620 8.2e-06 [+4]_12 chr6:17706185-17706205 1.4e-05 10_[+4]_2 chr7:120590674-120590694 2.3e-05 8_[+4]_4 chr7:99097897-99097917 3.5e-05 [+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAAAACA width=8 seqs=5 chrX:85302422-85302442 ( 5) AAAAAACA 1 chr9:125675600-125675620 ( 1) AGAAAACA 1 chr6:17706185-17706205 ( 11) AAAAAATA 1 chr7:120590674-120590694 ( 9) AGAAAACT 1 chr7:99097897-99097917 ( 1) CGAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.2866 E= 1.6e+003 203 -55 -897 -897 103 -897 102 -897 235 -897 -897 -897 235 -897 -897 -897 235 -897 -897 -897 235 -897 -897 -897 -897 144 -897 -11 203 -897 -897 -11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.6e+003 0.800000 0.200000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.000000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-4 regular expression -------------------------------------------------------------------------------- [AC][GA]AAAA[CT][AT] -------------------------------------------------------------------------------- Time 5.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAGTGR MEME-5 width = 8 sites = 6 llr = 58 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAGTGR MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::aa2::7 pos.-specific C ::::::2: probability G aa::8:83 matrix T :::::a:: bits 2.4 ** 2.1 ** * 1.9 ** * 1.6 **** * Relative 1.4 **** * Entropy 1.2 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGTGA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:203130384-203130404 11 1.23e-05 GGAACATTCT GGAAGTGA CG chr8:95907841-95907861 2 1.23e-05 G GGAAGTGA CCGTCCAGGG chr13:48877844-48877864 7 1.23e-05 GCGGGC GGAAGTGA CGTTTT chr7:26241034-26241054 5 3.09e-05 GCGA GGAAGTGG GCGGAGTC chr2:58468570-58468590 12 3.90e-05 TTCCGCGGGC GGAAATGA A chr22:27068787-27068807 9 8.21e-05 AGTACACA GGAAGTCG GCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:203130384-203130404 1.2e-05 10_[+5]_2 chr8:95907841-95907861 1.2e-05 1_[+5]_11 chr13:48877844-48877864 1.2e-05 6_[+5]_6 chr7:26241034-26241054 3.1e-05 4_[+5]_8 chr2:58468570-58468590 3.9e-05 11_[+5]_1 chr22:27068787-27068807 8.2e-05 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAGTGR width=8 seqs=6 chr2:203130384-203130404 ( 11) GGAAGTGA 1 chr8:95907841-95907861 ( 2) GGAAGTGA 1 chr13:48877844-48877864 ( 7) GGAAGTGA 1 chr7:26241034-26241054 ( 5) GGAAGTGG 1 chr2:58468570-58468590 ( 12) GGAAATGA 1 chr22:27068787-27068807 ( 9) GGAAGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.52677 E= 4.0e+003 -923 -923 176 -923 -923 -923 176 -923 235 -923 -923 -923 235 -923 -923 -923 -23 -923 150 -923 -923 -923 -923 221 -923 -82 150 -923 177 -923 18 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.666667 0.000000 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGR MEME-5 regular expression -------------------------------------------------------------------------------- GGAAGTG[AG] -------------------------------------------------------------------------------- Time 7.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:36235815-36235835 9.47e-01 20 chr3:130465628-130465648 1.29e-01 20 chr7:23514197-23514217 7.88e-01 20 chr9:140022182-140022202 8.62e-01 20 chr11:9595098-9595118 5.72e-01 20 chr2:219432922-219432942 2.75e-01 20 chr6:37137542-37137562 6.68e-01 20 chr13:48877844-48877864 1.96e-03 6_[+5(1.23e-05)]_6 chr22:38966079-38966099 4.57e-01 20 chr17:37558970-37558990 1.06e-02 4_[+1(1.63e-05)]_8 chr1:155246971-155246991 7.46e-01 20 chrX:153707475-153707495 2.14e-02 20 chr6:90539489-90539509 2.27e-01 20 chr17:60501160-60501180 3.67e-02 9_[+1(1.63e-05)]_3 chr9:94860409-94860429 9.69e-01 20 chr2:203103374-203103394 3.25e-01 20 chr2:174219411-174219431 8.95e-01 20 chr2:136288143-136288163 8.50e-01 20 chr8:128748413-128748433 2.01e-04 [+2(1.11e-05)]_12 chr1:24307110-24307130 1.01e-01 20 chr11:74303628-74303648 3.80e-02 4_[+1(8.92e-05)]_8 chr3:48595651-48595671 3.95e-01 20 chr7:100728627-100728647 8.76e-01 20 chr1:212209090-212209110 6.54e-01 20 chr13:34117077-34117097 6.99e-01 20 chr7:99156188-99156208 4.51e-01 20 chr2:58468570-58468590 8.16e-05 11_[+5(3.90e-05)]_1 chr17:21002582-21002602 7.34e-01 20 chr3:186524194-186524214 7.82e-02 20 chr2:48010356-48010376 8.89e-01 20 chr2:166810703-166810723 3.82e-04 2_[+2(1.11e-05)]_10 chr6:31632915-31632935 2.65e-03 3_[+3(3.24e-05)]_9 chr12:4378647-4378667 7.56e-01 20 chr20:5743269-5743289 1.60e-02 20 chr3:127609664-127609684 1.74e-03 2_[+1(1.63e-05)]_10 chr17:40333449-40333469 3.45e-02 1_[+1(1.63e-05)]_11 chr12:122124979-12212499 1.18e-01 20 chr15:44119239-44119259 9.44e-01 20 chr6:57182464-57182484 3.98e-02 10_[+1(1.63e-05)]_2 chr17:30263759-30263779 5.93e-01 20 chr6:6584269-6584289 7.89e-02 20 chr12:31226945-31226965 4.27e-01 20 chr20:5100007-5100027 8.90e-03 12_[+2(3.34e-05)] chr12:56843031-56843051 2.06e-01 20 chr1:243265187-243265207 2.27e-01 20 chr22:42342834-42342854 9.71e-01 20 chr11:75863344-75863364 8.85e-01 20 chr10:74386084-74386104 1.15e-01 20 chr16:67281618-67281638 4.09e-01 20 chrX:48659829-48659849 2.10e-04 [+2(2.23e-05)]_12 chr19:47292108-47292128 9.12e-01 20 chr1:46050550-46050570 7.32e-02 20 chr15:40987360-40987380 1.71e-04 20 chr1:151253861-151253881 3.55e-02 20 chr9:140485195-140485215 9.19e-01 20 chr7:100136436-100136456 2.19e-04 20 chr7:128116715-128116735 3.67e-02 10_[+1(1.63e-05)]_2 chr11:17297845-17297865 8.31e-01 20 chr17:76183162-76183182 6.64e-01 20 chr10:115614152-11561417 9.57e-01 20 chr5:68485388-68485408 8.77e-04 8_[+2(1.11e-05)]_4 chr17:58677172-58677192 9.93e-01 20 chr1:155197553-155197573 4.82e-01 20 chr6:159420862-159420882 9.82e-01 20 chr16:29984701-29984721 9.97e-01 20 chr11:58874713-58874733 1.49e-01 20 chr12:109535857-10953587 9.99e-01 20 chrX:55187340-55187360 7.97e-01 20 chr14:68286472-68286492 9.69e-01 20 chr19:16222057-16222077 1.18e-01 20 chr11:28129758-28129778 5.03e-01 20 chr3:132379028-132379048 7.81e-01 20 chr1:226595175-226595195 3.21e-01 20 chr12:123011775-12301179 8.86e-02 10_[+1(3.85e-05)]_2 chr16:30103965-30103985 6.91e-02 20 chr17:42264303-42264323 7.96e-01 20 chr16:85722570-85722590 4.01e-02 12_[+1(1.63e-05)] chr7:26241034-26241054 6.13e-03 4_[+5(3.09e-05)]_8 chr1:714075-714095 1.59e-01 20 chr16:74330482-74330502 7.16e-03 [+2(5.68e-05)]_12 chr18:77166048-77166068 9.70e-01 20 chr22:35796003-35796023 1.71e-01 20 chr17:40729717-40729737 2.05e-01 20 chr4:113558033-113558053 2.20e-04 4_[+1(3.85e-05)]_8 chr1:26232264-26232284 2.44e-02 11_[+2(7.35e-05)]_1 chr2:172779012-172779032 2.86e-02 20 chr1:170501454-170501474 8.62e-01 20 chr12:57146010-57146030 1.60e-01 20 chr7:21985728-21985748 8.44e-01 20 chr2:177800446-177800466 4.71e-01 20 chr14:74551656-74551676 5.22e-01 20 chr1:23857745-23857765 7.45e-01 20 chr17:57232231-57232251 1.89e-02 20 chr17:46048668-46048688 5.41e-01 20 chr2:132250604-132250624 8.52e-01 20 chr12:56521804-56521824 7.19e-02 11_[+1(1.63e-05)]_1 chr8:95907841-95907861 1.39e-02 1_[+5(1.23e-05)]_11 chr6:37467607-37467627 5.46e-02 9_[+1(3.85e-05)]_3 chr1:91966551-91966571 1.35e-01 20 chr15:64673680-64673700 9.26e-01 20 chr16:84760489-84760509 6.73e-01 20 chr11:111472708-11147272 8.89e-01 20 chr9:125675600-125675620 3.11e-03 [+4(8.18e-06)]_12 chr6:97731041-97731061 9.00e-03 20 chr17:29058408-29058428 8.35e-01 20 chr19:35168136-35168156 2.25e-01 20 chr19:50490581-50490601 7.13e-01 20 chr10:69523967-69523987 9.48e-01 20 chr9:21802532-21802552 1.37e-01 20 chr7:30544432-30544452 3.50e-01 20 chr17:7232839-7232859 7.29e-01 20 chr2:47630205-47630225 7.54e-01 20 chr2:136634094-136634114 2.71e-01 20 chr16:75466934-75466954 7.27e-01 20 chr10:15001885-15001905 2.62e-01 20 chr15:91473439-91473459 6.83e-01 20 chr1:155112997-155113017 2.47e-01 20 chr1:1590519-1590539 5.21e-01 20 chr7:148581712-148581732 9.38e-01 20 chr13:114103646-11410366 2.69e-01 20 chr19:10305300-10305320 4.20e-01 20 chr2:216979745-216979765 3.90e-01 20 chr14:64854832-64854852 3.80e-01 20 chr17:56084980-56085000 9.99e-01 20 chr19:48867558-48867578 7.40e-01 20 chr12:98910372-98910392 7.33e-01 20 chr2:216866671-216866691 6.19e-01 20 chr12:31479258-31479278 8.91e-02 20 chr15:44117083-44117103 8.93e-01 20 chr17:59940879-59940899 4.92e-01 20 chr8:48873266-48873286 7.13e-07 3_[+1(1.63e-05)]_9 chrX:85302422-85302442 2.54e-03 4_[+4(8.18e-06)]_8 chr17:37844371-37844391 6.04e-01 20 chr5:137549157-137549177 1.50e-01 20 chr1:1655832-1655852 9.97e-01 20 chrX:102942104-102942124 2.76e-02 20 chr15:66649056-66649076 2.54e-01 20 chr19:48707336-48707356 9.99e-01 20 chr3:10028557-10028577 9.75e-01 20 chr15:48624354-48624374 1.27e-04 [+3(6.60e-06)]_12 chr19:19314079-19314099 1.46e-02 20 chr2:203130384-203130404 1.65e-05 [+3(7.57e-05)]_2_[+5(1.23e-05)]_2 chr7:6865960-6865980 9.25e-01 20 chr7:73668708-73668728 1.81e-01 20 chr3:121264825-121264845 2.93e-02 20 chr16:20817847-20817867 8.90e-01 20 chr11:45939453-45939473 8.51e-01 20 chr19:15375057-15375077 7.72e-01 20 chr1:206753453-206753473 5.42e-01 20 chr17:38444118-38444138 9.62e-01 20 chr19:5978371-5978391 7.41e-01 20 chr19:36103589-36103609 1.12e-01 20 chr5:140079986-140080006 9.75e-01 20 chr4:39979801-39979821 1.31e-01 20 chr2:136743533-136743553 9.11e-01 20 chr6:28220053-28220073 1.79e-03 20 chr8:30891408-30891428 9.99e-01 20 chr19:46282692-46282712 7.89e-01 20 chr8:125654152-125654172 2.43e-01 20 chr21:38630663-38630683 1.18e-01 20 chr22:27068787-27068807 7.84e-04 8_[+5(8.21e-05)]_4 chr15:89164343-89164363 4.82e-01 20 chr16:31085696-31085716 1.97e-04 20 chr9:130700155-130700175 6.44e-01 20 chr4:41937153-41937173 3.65e-02 20 chr11:125495854-12549587 9.67e-04 1_[+2(1.11e-05)]_11 chr10:12110616-12110636 3.47e-01 20 chr3:48229938-48229958 5.45e-01 20 chr3:127317242-127317262 1.71e-02 12_[+1(8.92e-05)] chr7:7680571-7680591 9.77e-01 20 chr3:50265034-50265054 7.12e-01 20 chr2:219524312-219524332 5.40e-01 20 chr3:133380835-133380855 6.71e-01 20 chr4:120375789-120375809 9.48e-01 20 chr2:25016351-25016371 8.00e-01 20 chr10:70715841-70715861 1.02e-01 1_[+1(5.05e-05)]_11 chr19:49164386-49164406 9.41e-05 1_[+3(3.97e-05)]_11 chr19:13262807-13262827 9.80e-01 20 chr15:41166554-41166574 9.52e-01 20 chr4:39367950-39367970 5.89e-04 2_[+1(3.85e-05)]_10 chr3:101280633-101280653 6.36e-01 20 chr11:71639584-71639604 2.90e-01 20 chrX:153775828-153775848 8.53e-02 20 chr12:123011974-12301199 1.31e-01 20 chr6:89855505-89855525 7.69e-01 20 chr1:172366507-172366527 1.74e-01 20 chr17:75321378-75321398 2.53e-01 20 chr19:50887652-50887672 2.21e-03 4_[+2(2.23e-05)]_8 chr5:93954330-93954350 8.50e-01 20 chr7:99097897-99097917 6.46e-04 [+4(3.55e-05)]_12 chr12:69753922-69753942 6.81e-01 20 chr18:72265021-72265041 9.56e-01 20 chr8:33370680-33370700 5.30e-01 20 chr8:141522213-141522233 9.16e-01 20 chr11:47236596-47236616 9.85e-01 20 chr3:185655938-185655958 9.99e-01 20 chr5:180237347-180237367 9.70e-01 20 chr19:50862214-50862234 7.51e-01 20 chr22:47010131-47010151 9.96e-01 20 chr14:23388111-23388131 2.43e-01 20 chr3:129118425-129118445 4.97e-04 [+3(1.26e-05)]_12 chr9:91933880-91933900 5.52e-01 20 chr6:17706185-17706205 3.42e-04 10_[+4(1.42e-05)]_2 chr13:34392210-34392230 1.67e-01 20 chr7:100025818-100025838 8.73e-01 20 chr14:51706607-51706627 3.29e-04 20 chr15:40397256-40397276 3.03e-01 20 chr3:15469070-15469090 1.62e-02 20 chr17:26989089-26989109 5.15e-01 20 chr5:1783512-1783532 4.79e-02 2_[+1(3.85e-05)]_10 chr15:57998773-57998793 6.04e-01 20 chr6:4021735-4021755 2.57e-01 20 chr17:41277460-41277480 7.56e-01 20 chr18:2571477-2571497 8.74e-01 20 chr19:56111492-56111512 9.93e-01 20 chr19:47777094-47777114 1.19e-01 20 chr22:39919076-39919096 3.91e-01 20 chr7:120590674-120590694 1.27e-04 8_[+4(2.32e-05)]_4 chr7:99699100-99699120 5.43e-01 20 chr15:44092924-44092944 8.84e-01 20 chr4:24585202-24585222 1.40e-03 1_[+3(3.24e-05)]_11 chr13:73356088-73356108 3.71e-05 5_[+2(1.11e-05)]_7 chr22:19467283-19467303 1.15e-01 20 chr8:124408897-124408917 9.62e-01 20 chr11:19262605-19262625 9.37e-01 20 chr1:36851747-36851767 8.28e-01 20 chr2:242823406-242823426 9.44e-01 20 chr1:27191713-27191733 3.41e-01 20 chr2:230787559-230787579 8.10e-01 20 chr6:31126217-31126237 9.32e-01 20 chr9:123342653-123342673 9.73e-01 20 chr1:111506835-111506855 4.61e-01 20 chrX:15693387-15693407 3.05e-01 20 chr3:53926016-53926036 7.13e-01 20 chr7:45808652-45808672 5.58e-01 20 chr7:99613142-99613162 9.82e-01 20 chr5:40756176-40756196 6.94e-06 3_[+2(1.11e-05)]_9 chr6:160210811-160210831 1.37e-01 20 chr14:35761616-35761636 9.80e-01 20 chr22:31556086-31556106 1.10e-01 20 chr6:27113925-27113945 2.91e-02 20 chr7:86781596-86781616 2.68e-01 20 chr12:67664167-67664187 5.03e-03 [+3(4.87e-05)]_12 chr6:20402050-20402070 2.41e-04 7_[+2(4.57e-05)]_5 chr1:154155724-154155744 8.86e-01 20 chr16:72699068-72699088 7.89e-01 20 chr9:104296078-104296098 1.43e-01 20 chr12:21654533-21654553 7.84e-03 20 chr9:137030009-137030029 9.12e-01 20 chr17:56405859-56405879 9.44e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************