******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/DPF2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:52930078-52930098 1.0000 20 chr6:43276526-43276546 1.0000 20 chr7:949524-949544 1.0000 20 chr17:78169989-78170009 1.0000 20 chr16:4364432-4364452 1.0000 20 chr2:31359718-31359738 1.0000 20 chr7:1397122-1397142 1.0000 20 chr17:26220467-26220487 1.0000 20 chr6:109330818-109330838 1.0000 20 chr19:344958-344978 1.0000 20 chr22:25890988-25891008 1.0000 20 chr19:2489559-2489579 1.0000 20 chr19:4060252-4060272 1.0000 20 chrX:1611066-1611086 1.0000 20 chr21:45206705-45206725 1.0000 20 chr14:93106201-93106221 1.0000 20 chr17:25905838-25905858 1.0000 20 chr5:79950687-79950707 1.0000 20 chr2:37085930-37085950 1.0000 20 chr9:117244256-117244276 1.0000 20 chr16:25269829-25269849 1.0000 20 chr17:79024075-79024095 1.0000 20 chr11:3113125-3113145 1.0000 20 chr16:89253275-89253295 1.0000 20 chr1:117151698-117151718 1.0000 20 chr6:3384038-3384058 1.0000 20 chr1:24648643-24648663 1.0000 20 chr7:5571568-5571588 1.0000 20 chr2:20063260-20063280 1.0000 20 chr1:19812617-19812637 1.0000 20 chr18:45457435-45457455 1.0000 20 chr3:32619502-32619522 1.0000 20 chr19:10380168-10380188 1.0000 20 chrX:119170126-119170146 1.0000 20 chr13:20532743-20532763 1.0000 20 chr21:45206904-45206924 1.0000 20 chr19:1482675-1482695 1.0000 20 chr1:10270510-10270530 1.0000 20 chr11:70049120-70049140 1.0000 20 chr1:155057897-155057917 1.0000 20 chr16:84538279-84538299 1.0000 20 chr19:39420908-39420928 1.0000 20 chr9:34989575-34989595 1.0000 20 chr21:44394750-44394770 1.0000 20 chr22:37258890-37258910 1.0000 20 chr17:44302793-44302813 1.0000 20 chr1:167691140-167691160 1.0000 20 chr22:21921834-21921854 1.0000 20 chr19:13906055-13906075 1.0000 20 chr15:52311155-52311175 1.0000 20 chr16:29673074-29673094 1.0000 20 chr11:535664-535684 1.0000 20 chr8:124085424-124085444 1.0000 20 chr5:153883082-153883102 1.0000 20 chr11:85930765-85930785 1.0000 20 chr20:31125187-31125207 1.0000 20 chr8:145159279-145159299 1.0000 20 chr17:36105326-36105346 1.0000 20 chr13:20437886-20437906 1.0000 20 chr16:89252554-89252574 1.0000 20 chr19:33864529-33864549 1.0000 20 chr12:53473268-53473288 1.0000 20 chr10:102790962-10279098 1.0000 20 chr3:100211347-100211367 1.0000 20 chr4:40658562-40658582 1.0000 20 chr19:45873915-45873935 1.0000 20 chr1:54872143-54872163 1.0000 20 chr11:55425707-55425727 1.0000 20 chr8:144450935-144450955 1.0000 20 chr1:1136959-1136979 1.0000 20 chr7:100027738-100027758 1.0000 20 chr5:55444352-55444372 1.0000 20 chr18:71959330-71959350 1.0000 20 chr15:70392090-70392110 1.0000 20 chr10:104261983-10426200 1.0000 20 chr20:17662958-17662978 1.0000 20 chr22:20004486-20004506 1.0000 20 chr8:86158099-86158119 1.0000 20 chr11:111250190-11125021 1.0000 20 chr16:48222587-48222607 1.0000 20 chr2:25194625-25194645 1.0000 20 chr19:19496459-19496479 1.0000 20 chr6:126120066-126120086 1.0000 20 chr19:7894914-7894934 1.0000 20 chr2:73298503-73298523 1.0000 20 chr19:18315094-18315114 1.0000 20 chr9:137326307-137326327 1.0000 20 chr16:85061330-85061350 1.0000 20 chr4:3076299-3076319 1.0000 20 chr16:22385990-22386010 1.0000 20 chr11:71673781-71673801 1.0000 20 chr16:89253476-89253496 1.0000 20 chr5:149461578-149461598 1.0000 20 chr6:140163156-140163176 1.0000 20 chr18:48405426-48405446 1.0000 20 chr1:32719158-32719178 1.0000 20 chr4:124247-124267 1.0000 20 chr9:139780814-139780834 1.0000 20 chr11:107550079-10755009 1.0000 20 chr19:1040021-1040041 1.0000 20 chr12:66449710-66449730 1.0000 20 chr3:52091038-52091058 1.0000 20 chr7:133977978-133977998 1.0000 20 chr19:10987505-10987525 1.0000 20 chr4:14127187-14127207 1.0000 20 chr10:49893011-49893031 1.0000 20 chr4:6271468-6271488 1.0000 20 chr19:36193347-36193367 1.0000 20 chr15:45002890-45002910 1.0000 20 chr2:220094360-220094380 1.0000 20 chr1:121200708-121200728 1.0000 20 chr3:17440856-17440876 1.0000 20 chr17:74667881-74667901 1.0000 20 chr1:184943270-184943290 1.0000 20 chr9:129677066-129677086 1.0000 20 chr1:87082769-87082789 1.0000 20 chr4:184580380-184580400 1.0000 20 chr2:44395583-44395603 1.0000 20 chr17:37911016-37911036 1.0000 20 chr5:35518380-35518400 1.0000 20 chr12:111040055-11104007 1.0000 20 chr6:44040953-44040973 1.0000 20 chr4:52709092-52709112 1.0000 20 chr11:117699482-11769950 1.0000 20 chr15:89631533-89631553 1.0000 20 chr4:145469059-145469079 1.0000 20 chr12:104991429-10499144 1.0000 20 chr1:77402582-77402602 1.0000 20 chr2:200094081-200094101 1.0000 20 chr4:160858960-160858980 1.0000 20 chr10:5932085-5932105 1.0000 20 chr9:82246075-82246095 1.0000 20 chr8:12623085-12623105 1.0000 20 chr19:4968801-4968821 1.0000 20 chr19:6280024-6280044 1.0000 20 chr6:5724349-5724369 1.0000 20 chr22:20008504-20008524 1.0000 20 chr8:95739459-95739479 1.0000 20 chr7:100184181-100184201 1.0000 20 chr12:48136121-48136141 1.0000 20 chr1:150601673-150601693 1.0000 20 chr1:144908478-144908498 1.0000 20 chr3:100360563-100360583 1.0000 20 chr14:73925453-73925473 1.0000 20 chr11:44581129-44581149 1.0000 20 chr19:1041088-1041108 1.0000 20 chr6:58313035-58313055 1.0000 20 chr2:29468565-29468585 1.0000 20 chr2:216782892-216782912 1.0000 20 chr2:194533565-194533585 1.0000 20 chr4:186130652-186130672 1.0000 20 chr18:48680532-48680552 1.0000 20 chr5:150460634-150460654 1.0000 20 chr19:7766530-7766550 1.0000 20 chr11:120796857-12079687 1.0000 20 chr1:101775436-101775456 1.0000 20 chr5:139119933-139119953 1.0000 20 chr19:47551942-47551962 1.0000 20 chr9:126031077-126031097 1.0000 20 chr3:88108243-88108263 1.0000 20 chr12:124969438-12496945 1.0000 20 chr19:15490355-15490375 1.0000 20 chr9:109935366-109935386 1.0000 20 chr15:43785412-43785432 1.0000 20 chr2:76677500-76677520 1.0000 20 chr2:146967711-146967731 1.0000 20 chr20:48770565-48770585 1.0000 20 chr8:134582217-134582237 1.0000 20 chr3:195163901-195163921 1.0000 20 chr6:32146126-32146146 1.0000 20 chr9:136810760-136810780 1.0000 20 chr20:3869886-3869906 1.0000 20 chr20:30311524-30311544 1.0000 20 chr14:65007139-65007159 1.0000 20 chr4:331451-331471 1.0000 20 chr5:150005699-150005719 1.0000 20 chr19:14063094-14063114 1.0000 20 chr11:63399127-63399147 1.0000 20 chr19:39340703-39340723 1.0000 20 chr1:58570877-58570897 1.0000 20 chr19:19174572-19174592 1.0000 20 chr5:158348620-158348640 1.0000 20 chr20:34360213-34360233 1.0000 20 chr17:25680796-25680816 1.0000 20 chr17:18086697-18086717 1.0000 20 chr15:96777943-96777963 1.0000 20 chr17:26368602-26368622 1.0000 20 chr8:123800387-123800407 1.0000 20 chr2:198669287-198669307 1.0000 20 chr20:61609386-61609406 1.0000 20 chr6:62996209-62996229 1.0000 20 chr16:1728176-1728196 1.0000 20 chr12:121108665-12110868 1.0000 20 chr14:62219425-62219445 1.0000 20 chr2:232646061-232646081 1.0000 20 chr2:136288897-136288917 1.0000 20 chr4:110912097-110912117 1.0000 20 chr17:15734658-15734678 1.0000 20 chr19:35632567-35632587 1.0000 20 chr14:23341050-23341070 1.0000 20 chr13:29293177-29293197 1.0000 20 chr19:12662436-12662456 1.0000 20 chr15:99395698-99395718 1.0000 20 chrX:128920390-128920410 1.0000 20 chr19:33166140-33166160 1.0000 20 chr6:112194716-112194736 1.0000 20 chr13:53495524-53495544 1.0000 20 chr11:75864421-75864441 1.0000 20 chr8:8096343-8096363 1.0000 20 chr22:39152026-39152046 1.0000 20 chr3:9885728-9885748 1.0000 20 chr19:4472130-4472150 1.0000 20 chr6:84480832-84480852 1.0000 20 chr16:11783340-11783360 1.0000 20 chr1:200849596-200849616 1.0000 20 chr22:33695723-33695743 1.0000 20 chr14:89882550-89882570 1.0000 20 chr16:89831463-89831483 1.0000 20 chr19:55851068-55851088 1.0000 20 chr13:107188092-10718811 1.0000 20 chr14:76139972-76139992 1.0000 20 chr17:46125539-46125559 1.0000 20 chr12:78210131-78210151 1.0000 20 chr22:23412314-23412334 1.0000 20 chr22:40440292-40440312 1.0000 20 chr5:134735135-134735155 1.0000 20 chr19:13215392-13215412 1.0000 20 chr19:1261007-1261027 1.0000 20 chr19:42773206-42773226 1.0000 20 chr22:41032789-41032809 1.0000 20 chr1:153895609-153895629 1.0000 20 chr1:151254632-151254652 1.0000 20 chr11:120483779-12048379 1.0000 20 chr12:56367649-56367669 1.0000 20 chr12:93323239-93323259 1.0000 20 chr4:157122386-157122406 1.0000 20 chr16:21371675-21371695 1.0000 20 chr15:77312858-77312878 1.0000 20 chr18:54199619-54199639 1.0000 20 chr2:20725143-20725163 1.0000 20 chr11:124942493-12494251 1.0000 20 chr8:95453048-95453068 1.0000 20 chr20:60813430-60813450 1.0000 20 chr20:45035342-45035362 1.0000 20 chr3:90085065-90085085 1.0000 20 chr2:79204871-79204891 1.0000 20 chr15:52394331-52394351 1.0000 20 chr12:112432604-11243262 1.0000 20 chr13:82067460-82067480 1.0000 20 chr1:145477019-145477039 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_DPF2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/DPF2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.212 C 0.282 G 0.29 T 0.217 Background letter frequencies (from file dataset with add-one prior applied): A 0.212 C 0.282 G 0.29 T 0.217 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AACTGAAA MEME-1 width = 8 sites = 10 llr = 95 E-value = 1.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACTGAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 981::aa9 pos.-specific C ::6::::1 probability G 1:2:a::: matrix T :21a:::: bits 2.2 * ** 2.0 * ** 1.8 * ***** 1.6 ** ***** Relative 1.3 ** ***** Entropy 1.1 ** ***** (13.8 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel AACTGAAA consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTGAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:89831463-89831483 10 7.60e-06 AGGAACTGA AACTGAAA CAG chr13:53495524-53495544 7 7.60e-06 AAAGGG AACTGAAA GTCAGA chr6:44040953-44040973 11 7.60e-06 TTGGGGTGGC AACTGAAA AG chr12:78210131-78210151 4 1.54e-05 GTA AAGTGAAA ATGGGAAGT chr17:15734658-15734678 9 1.54e-05 gcacagag aagtgaaa acgt chr3:17440856-17440876 8 2.32e-05 AAAAAGG ATCTGAAA CAGAG chr15:96777943-96777963 8 3.48e-05 TTAACAG AAATGAAA GGATA chr1:77402582-77402602 13 6.33e-05 ATGATACTAA GACTGAAA chr3:52091038-52091058 9 6.33e-05 caaatgag aactgaac gcct chr2:76677500-76677520 9 7.51e-05 AACCGTGA ATTTGAAA GCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTGAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89831463-89831483 7.6e-06 9_[+1]_3 chr13:53495524-53495544 7.6e-06 6_[+1]_6 chr6:44040953-44040973 7.6e-06 10_[+1]_2 chr12:78210131-78210151 1.5e-05 3_[+1]_9 chr17:15734658-15734678 1.5e-05 8_[+1]_4 chr3:17440856-17440876 2.3e-05 7_[+1]_5 chr15:96777943-96777963 3.5e-05 7_[+1]_5 chr1:77402582-77402602 6.3e-05 12_[+1] chr3:52091038-52091058 6.3e-05 8_[+1]_4 chr2:76677500-76677520 7.5e-05 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTGAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACTGAAA width=8 seqs=10 chr16:89831463-89831483 ( 10) AACTGAAA 1 chr13:53495524-53495544 ( 7) AACTGAAA 1 chr6:44040953-44040973 ( 11) AACTGAAA 1 chr12:78210131-78210151 ( 4) AAGTGAAA 1 chr17:15734658-15734678 ( 9) AAGTGAAA 1 chr3:17440856-17440876 ( 8) ATCTGAAA 1 chr15:96777943-96777963 ( 8) AAATGAAA 1 chr1:77402582-77402602 ( 13) GACTGAAA 1 chr3:52091038-52091058 ( 9) AACTGAAC 1 chr2:76677500-76677520 ( 9) ATTTGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTGAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 1.0e-001 209 -997 -153 -997 192 -997 -997 -12 -108 109 -53 -111 -997 -997 -997 221 -997 -997 179 -997 224 -997 -997 -997 224 -997 -997 -997 209 -149 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTGAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.0e-001 0.900000 0.000000 0.100000 0.000000 0.800000 0.000000 0.000000 0.200000 0.100000 0.600000 0.200000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACTGAAA MEME-1 regular expression -------------------------------------------------------------------------------- A[AT][CG]TGAAA -------------------------------------------------------------------------------- Time 1.84 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTACTAT MEME-2 width = 8 sites = 5 llr = 55 E-value = 2.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTACTAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a::a: pos.-specific C aa::8::: probability G :::::::: matrix T ::a:2a:a bits 2.2 ** *** 2.0 ** *** 1.8 **** *** 1.6 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTACTAT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTACTAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:121108665-12110868 13 1.03e-05 ttattgagct cctactat chr8:123800387-123800407 13 1.03e-05 AAAGtaagca cctactat chr22:37258890-37258910 6 1.03e-05 gagca cctactat gtgccag chr2:31359718-31359738 2 1.03e-05 a cctactat gcacctggca chr3:32619502-32619522 13 1.82e-05 TGGGCTGCTT CCTATTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTACTAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:121108665-12110868 1e-05 12_[+2] chr8:123800387-123800407 1e-05 12_[+2] chr22:37258890-37258910 1e-05 5_[+2]_7 chr2:31359718-31359738 1e-05 1_[+2]_11 chr3:32619502-32619522 1.8e-05 12_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTACTAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTACTAT width=8 seqs=5 chr12:121108665-12110868 ( 13) CCTACTAT 1 chr8:123800387-123800407 ( 13) CCTACTAT 1 chr22:37258890-37258910 ( 6) CCTACTAT 1 chr2:31359718-31359738 ( 2) CCTACTAT 1 chr3:32619502-32619522 ( 13) CCTATTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTACTAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 2.3e+001 -897 182 -897 -897 -897 182 -897 -897 -897 -897 -897 220 224 -897 -897 -897 -897 150 -897 -11 -897 -897 -897 220 224 -897 -897 -897 -897 -897 -897 220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTACTAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.3e+001 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTACTAT MEME-2 regular expression -------------------------------------------------------------------------------- CCTA[CT]TAT -------------------------------------------------------------------------------- Time 2.58 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACAGTA MEME-3 width = 8 sites = 9 llr = 80 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACAGTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:81a::a pos.-specific C :a:6::1: probability G 2::1:a:: matrix T ::22::9: bits 2.2 * * 2.0 * * 1.8 * ** * 1.6 ** **** Relative 1.3 *** **** Entropy 1.1 *** **** (12.9 bits) 0.9 *** **** 0.7 *** **** 0.4 *** **** 0.2 ******** 0.0 -------- Multilevel ACACAGTA consensus G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:79204871-79204891 5 1.01e-05 CTCA ACACAGTA AATTAACC chr16:89252554-89252574 12 1.01e-05 cttAcccagc acacagta g chr12:48136121-48136141 10 1.79e-05 gtgcctggc acatagta ggg chr19:39420908-39420928 13 1.79e-05 CATTCTTGGC ACATAGTA chr16:89253275-89253295 5 4.97e-05 CAGC GCACAGTA Ggtgctct chr7:1397122-1397142 8 4.97e-05 CTTTAGT GCACAGTA GGTAA chr2:29468565-29468585 10 9.18e-05 ATGCCCTGC ACACAGCA GGG chr1:117151698-117151718 1 9.96e-05 . ACTAAGTA CTCACGCCTG chr15:45002890-45002910 9 1.35e-04 ttcggttt actgagta ccta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:79204871-79204891 1e-05 4_[+3]_8 chr16:89252554-89252574 1e-05 11_[+3]_1 chr12:48136121-48136141 1.8e-05 9_[+3]_3 chr19:39420908-39420928 1.8e-05 12_[+3] chr16:89253275-89253295 5e-05 4_[+3]_8 chr7:1397122-1397142 5e-05 7_[+3]_5 chr2:29468565-29468585 9.2e-05 9_[+3]_3 chr1:117151698-117151718 0.0001 [+3]_12 chr15:45002890-45002910 0.00013 8_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACAGTA width=8 seqs=9 chr2:79204871-79204891 ( 5) ACACAGTA 1 chr16:89252554-89252574 ( 12) ACACAGTA 1 chr12:48136121-48136141 ( 10) ACATAGTA 1 chr19:39420908-39420928 ( 13) ACATAGTA 1 chr16:89253275-89253295 ( 5) GCACAGTA 1 chr7:1397122-1397142 ( 8) GCACAGTA 1 chr2:29468565-29468585 ( 10) ACACAGCA 1 chr1:117151698-117151718 ( 1) ACTAAGTA 1 chr15:45002890-45002910 ( 9) ACTGAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.89918 E= 1.1e+002 188 -982 -38 -982 -982 183 -982 -982 188 -982 -982 4 -93 98 -138 4 224 -982 -982 -982 -982 -982 179 -982 -982 -134 -982 204 224 -982 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+002 0.777778 0.000000 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.000000 0.000000 0.222222 0.111111 0.555556 0.111111 0.222222 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGTA MEME-3 regular expression -------------------------------------------------------------------------------- [AG]C[AT][CT]AGTA -------------------------------------------------------------------------------- Time 6.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTCMSTC MEME-4 width = 8 sites = 10 llr = 88 E-value = 4.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCMSTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::4::: pos.-specific C :3:a54:a probability G :7:::6:: matrix T a:a:1:a: bits 2.2 * * * 2.0 * * * 1.8 * ** ** 1.6 * ** ** Relative 1.3 * ** ** Entropy 1.1 * ** ** (12.7 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTCCGTC consensus C AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCMSTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:23412314-23412334 5 3.38e-05 CCCC TGTCCGTC CCCATTGG chr22:39152026-39152046 1 3.38e-05 . TGTCAGTC AACGCTGACA chr22:20004486-20004506 9 3.38e-05 CTCCGGGA TGTCAGTC CCGG chr15:70392090-70392110 6 3.38e-05 GGCCC TGTCAGTC CGCGGCC chr1:10270510-10270530 7 3.38e-05 AGCCCG TGTCCGTC GCGGGC chr4:186130652-186130672 10 6.66e-05 CCTCCCGGC TGTCACTC AGC chr12:56367649-56367669 5 1.31e-04 GGTT TCTCCCTC GCTATTGG chr8:8096343-8096363 3 1.31e-04 TT TCTCCCTC CTCACTGAGT chr2:198669287-198669307 11 1.31e-04 TCAAAACAAG TCTCCCTC CC chr20:45035342-45035362 12 1.46e-04 TTAGGTTGCT TGTCTGTC A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCMSTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:23412314-23412334 3.4e-05 4_[+4]_8 chr22:39152026-39152046 3.4e-05 [+4]_12 chr22:20004486-20004506 3.4e-05 8_[+4]_4 chr15:70392090-70392110 3.4e-05 5_[+4]_7 chr1:10270510-10270530 3.4e-05 6_[+4]_6 chr4:186130652-186130672 6.7e-05 9_[+4]_3 chr12:56367649-56367669 0.00013 4_[+4]_8 chr8:8096343-8096363 0.00013 2_[+4]_10 chr2:198669287-198669307 0.00013 10_[+4]_2 chr20:45035342-45035362 0.00015 11_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCMSTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCMSTC width=8 seqs=10 chr22:23412314-23412334 ( 5) TGTCCGTC 1 chr22:39152026-39152046 ( 1) TGTCAGTC 1 chr22:20004486-20004506 ( 9) TGTCAGTC 1 chr15:70392090-70392110 ( 6) TGTCAGTC 1 chr1:10270510-10270530 ( 7) TGTCCGTC 1 chr4:186130652-186130672 ( 10) TGTCACTC 1 chr12:56367649-56367669 ( 5) TCTCCCTC 1 chr8:8096343-8096363 ( 3) TCTCCCTC 1 chr2:198669287-198669307 ( 11) TCTCCCTC 1 chr20:45035342-45035362 ( 12) TGTCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCMSTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 4.4e+002 -997 -997 -997 221 -997 9 127 -997 -997 -997 -997 221 -997 183 -997 -997 92 83 -997 -111 -997 50 105 -997 -997 -997 -997 221 -997 183 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCMSTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.4e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.500000 0.000000 0.100000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCMSTC MEME-4 regular expression -------------------------------------------------------------------------------- T[GC]TC[CA][GC]TC -------------------------------------------------------------------------------- Time 8.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TCATTTMA MEME-5 width = 8 sites = 3 llr = 34 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCATTTMA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:::3a pos.-specific C :a::::7: probability G :::::::: matrix T a::aaa:: bits 2.2 * **** * 2.0 * **** * 1.8 ****** * 1.6 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCATTTCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATTTMA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:121200708-121200728 6 7.93e-06 ATAGC TCATTTCA AACTACG chr19:7894914-7894934 12 7.93e-06 ACCGCTTCCC TCATTTCA A chr14:76139972-76139992 9 1.39e-05 acatgagc tcatttaa tgtc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATTTMA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:121200708-121200728 7.9e-06 5_[+5]_7 chr19:7894914-7894934 7.9e-06 11_[+5]_1 chr14:76139972-76139992 1.4e-05 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATTTMA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCATTTMA width=8 seqs=3 chr1:121200708-121200728 ( 6) TCATTTCA 1 chr19:7894914-7894934 ( 12) TCATTTCA 1 chr14:76139972-76139992 ( 9) TCATTTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATTTMA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 5.4e+003 -823 -823 -823 220 -823 182 -823 -823 224 -823 -823 -823 -823 -823 -823 220 -823 -823 -823 220 -823 -823 -823 220 65 124 -823 -823 224 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATTTMA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.4e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCATTTMA MEME-5 regular expression -------------------------------------------------------------------------------- TCATTT[CA]A -------------------------------------------------------------------------------- Time 11.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:52930078-52930098 9.42e-01 20 chr6:43276526-43276546 7.39e-01 20 chr7:949524-949544 5.73e-01 20 chr17:78169989-78170009 8.94e-01 20 chr16:4364432-4364452 3.02e-01 20 chr2:31359718-31359738 2.52e-03 1_[+2(1.03e-05)]_11 chr7:1397122-1397142 8.67e-03 7_[+3(4.97e-05)]_5 chr17:26220467-26220487 5.32e-01 20 chr6:109330818-109330838 9.65e-01 20 chr19:344958-344978 9.98e-01 20 chr22:25890988-25891008 8.84e-01 20 chr19:2489559-2489579 7.16e-01 20 chr19:4060252-4060272 8.26e-01 20 chrX:1611066-1611086 5.59e-01 20 chr21:45206705-45206725 2.84e-01 20 chr14:93106201-93106221 5.08e-01 20 chr17:25905838-25905858 6.50e-02 20 chr5:79950687-79950707 9.15e-01 20 chr2:37085930-37085950 2.89e-01 20 chr9:117244256-117244276 3.60e-01 20 chr16:25269829-25269849 2.86e-02 20 chr17:79024075-79024095 8.77e-01 20 chr11:3113125-3113145 9.88e-01 20 chr16:89253275-89253295 6.37e-02 4_[+3(4.97e-05)]_8 chr1:117151698-117151718 3.96e-02 [+3(9.96e-05)]_12 chr6:3384038-3384058 9.22e-01 20 chr1:24648643-24648663 4.64e-01 20 chr7:5571568-5571588 7.98e-01 20 chr2:20063260-20063280 9.84e-01 20 chr1:19812617-19812637 4.45e-01 20 chr18:45457435-45457455 1.00e+00 20 chr3:32619502-32619522 5.44e-03 12_[+2(1.82e-05)] chr19:10380168-10380188 2.64e-01 20 chrX:119170126-119170146 3.38e-02 20 chr13:20532743-20532763 7.88e-01 20 chr21:45206904-45206924 6.60e-01 20 chr19:1482675-1482695 3.29e-01 20 chr1:10270510-10270530 8.91e-02 6_[+4(3.38e-05)]_6 chr11:70049120-70049140 7.06e-01 20 chr1:155057897-155057917 2.35e-01 20 chr16:84538279-84538299 3.90e-01 20 chr19:39420908-39420928 1.80e-02 12_[+3(1.79e-05)] chr9:34989575-34989595 8.69e-01 20 chr21:44394750-44394770 8.67e-01 20 chr22:37258890-37258910 2.48e-03 5_[+2(1.03e-05)]_7 chr17:44302793-44302813 1.26e-01 20 chr1:167691140-167691160 3.26e-01 20 chr22:21921834-21921854 3.72e-01 20 chr19:13906055-13906075 8.11e-01 20 chr15:52311155-52311175 1.95e-01 20 chr16:29673074-29673094 4.81e-01 20 chr11:535664-535684 2.28e-01 20 chr8:124085424-124085444 1.10e-01 20 chr5:153883082-153883102 9.32e-01 20 chr11:85930765-85930785 1.35e-01 20 chr20:31125187-31125207 8.76e-01 20 chr8:145159279-145159299 6.21e-01 20 chr17:36105326-36105346 9.98e-01 20 chr13:20437886-20437906 7.07e-01 20 chr16:89252554-89252574 2.18e-02 11_[+3(1.01e-05)]_1 chr19:33864529-33864549 8.30e-01 20 chr12:53473268-53473288 8.32e-01 20 chr10:102790962-10279098 9.51e-01 20 chr3:100211347-100211367 9.92e-01 20 chr4:40658562-40658582 6.85e-01 20 chr19:45873915-45873935 1.14e-01 20 chr1:54872143-54872163 9.60e-01 20 chr11:55425707-55425727 1.58e-01 20 chr8:144450935-144450955 3.91e-01 20 chr1:1136959-1136979 2.63e-01 20 chr7:100027738-100027758 9.72e-01 20 chr5:55444352-55444372 7.58e-01 20 chr18:71959330-71959350 9.00e-01 20 chr15:70392090-70392110 1.63e-02 5_[+4(3.38e-05)]_7 chr10:104261983-10426200 8.86e-01 20 chr20:17662958-17662978 7.99e-01 20 chr22:20004486-20004506 1.83e-02 8_[+4(3.38e-05)]_4 chr8:86158099-86158119 6.55e-01 20 chr11:111250190-11125021 7.05e-01 20 chr16:48222587-48222607 2.13e-02 20 chr2:25194625-25194645 6.14e-01 20 chr19:19496459-19496479 3.33e-01 20 chr6:126120066-126120086 3.75e-01 20 chr19:7894914-7894934 1.02e-03 11_[+5(7.93e-06)]_1 chr2:73298503-73298523 9.65e-01 20 chr19:18315094-18315114 1.49e-01 20 chr9:137326307-137326327 4.03e-01 20 chr16:85061330-85061350 9.60e-01 20 chr4:3076299-3076319 9.07e-01 20 chr16:22385990-22386010 9.97e-01 20 chr11:71673781-71673801 1.90e-01 20 chr16:89253476-89253496 7.59e-02 20 chr5:149461578-149461598 7.75e-01 20 chr6:140163156-140163176 4.68e-01 20 chr18:48405426-48405446 7.76e-01 20 chr1:32719158-32719178 7.74e-01 20 chr4:124247-124267 5.52e-01 20 chr9:139780814-139780834 9.98e-01 20 chr11:107550079-10755009 6.35e-02 20 chr19:1040021-1040041 6.37e-01 20 chr12:66449710-66449730 7.34e-02 20 chr3:52091038-52091058 4.06e-02 8_[+1(6.33e-05)]_4 chr7:133977978-133977998 7.71e-02 20 chr19:10987505-10987525 1.27e-02 20 chr4:14127187-14127207 1.13e-03 8_[+5(2.81e-05)]_4 chr10:49893011-49893031 6.37e-01 20 chr4:6271468-6271488 8.98e-01 20 chr19:36193347-36193367 9.87e-01 20 chr15:45002890-45002910 1.81e-02 20 chr2:220094360-220094380 5.46e-01 20 chr1:121200708-121200728 9.45e-05 5_[+5(7.93e-06)]_7 chr3:17440856-17440876 8.29e-03 7_[+1(2.32e-05)]_5 chr17:74667881-74667901 7.76e-01 20 chr1:184943270-184943290 9.43e-01 20 chr9:129677066-129677086 8.42e-01 20 chr1:87082769-87082789 4.97e-01 20 chr4:184580380-184580400 9.45e-01 20 chr2:44395583-44395603 9.19e-01 20 chr17:37911016-37911036 8.85e-01 20 chr5:35518380-35518400 9.28e-01 20 chr12:111040055-11104007 7.26e-01 20 chr6:44040953-44040973 8.81e-03 10_[+1(7.60e-06)]_2 chr4:52709092-52709112 9.01e-01 20 chr11:117699482-11769950 4.71e-01 20 chr15:89631533-89631553 3.75e-01 20 chr4:145469059-145469079 2.60e-01 20 chr12:104991429-10499144 5.20e-01 20 chr1:77402582-77402602 6.20e-03 12_[+1(6.33e-05)] chr2:200094081-200094101 6.41e-01 20 chr4:160858960-160858980 4.90e-01 20 chr10:5932085-5932105 9.73e-01 20 chr9:82246075-82246095 7.42e-01 20 chr8:12623085-12623105 4.26e-01 20 chr19:4968801-4968821 9.16e-01 20 chr19:6280024-6280044 1.53e-01 20 chr6:5724349-5724369 1.90e-01 20 chr22:20008504-20008524 9.22e-01 20 chr8:95739459-95739479 5.25e-01 20 chr7:100184181-100184201 7.50e-01 20 chr12:48136121-48136141 3.15e-03 9_[+3(1.79e-05)]_3 chr1:150601673-150601693 1.31e-01 20 chr1:144908478-144908498 2.16e-02 20 chr3:100360563-100360583 9.04e-01 20 chr14:73925453-73925473 8.12e-01 20 chr11:44581129-44581149 7.26e-01 20 chr19:1041088-1041108 2.43e-01 20 chr6:58313035-58313055 4.56e-01 20 chr2:29468565-29468585 6.92e-02 9_[+3(9.18e-05)]_3 chr2:216782892-216782912 2.47e-01 20 chr2:194533565-194533585 4.59e-01 20 chr4:186130652-186130672 2.81e-02 9_[+4(6.66e-05)]_3 chr18:48680532-48680552 9.41e-01 20 chr5:150460634-150460654 4.66e-01 20 chr19:7766530-7766550 7.59e-01 20 chr11:120796857-12079687 8.28e-01 20 chr1:101775436-101775456 1.32e-01 20 chr5:139119933-139119953 5.28e-01 20 chr19:47551942-47551962 7.96e-01 20 chr9:126031077-126031097 9.49e-01 20 chr3:88108243-88108263 8.18e-01 20 chr12:124969438-12496945 4.53e-01 20 chr19:15490355-15490375 6.00e-01 20 chr9:109935366-109935386 1.95e-01 20 chr15:43785412-43785432 8.92e-01 20 chr2:76677500-76677520 1.06e-02 8_[+1(7.51e-05)]_4 chr2:146967711-146967731 1.81e-01 20 chr20:48770565-48770585 6.98e-01 20 chr8:134582217-134582237 8.82e-01 20 chr3:195163901-195163921 5.78e-01 20 chr6:32146126-32146146 2.02e-01 20 chr9:136810760-136810780 5.04e-02 20 chr20:3869886-3869906 9.58e-03 20 chr20:30311524-30311544 5.39e-01 20 chr14:65007139-65007159 9.66e-01 20 chr4:331451-331471 4.85e-01 20 chr5:150005699-150005719 2.83e-01 20 chr19:14063094-14063114 3.78e-01 20 chr11:63399127-63399147 2.23e-01 20 chr19:39340703-39340723 9.79e-01 20 chr1:58570877-58570897 4.68e-01 20 chr19:19174572-19174592 8.94e-01 20 chr5:158348620-158348640 7.91e-01 20 chr20:34360213-34360233 9.78e-01 20 chr17:25680796-25680816 8.69e-01 20 chr17:18086697-18086717 5.52e-01 20 chr15:96777943-96777963 5.79e-02 7_[+1(3.48e-05)]_5 chr17:26368602-26368622 9.87e-01 20 chr8:123800387-123800407 5.34e-04 12_[+2(1.03e-05)] chr2:198669287-198669307 2.26e-02 20 chr20:61609386-61609406 9.11e-01 20 chr6:62996209-62996229 9.08e-01 20 chr16:1728176-1728196 8.08e-01 20 chr12:121108665-12110868 4.13e-03 12_[+2(1.03e-05)] chr14:62219425-62219445 4.55e-01 20 chr2:232646061-232646081 4.93e-02 20 chr2:136288897-136288917 8.32e-01 20 chr4:110912097-110912117 3.31e-01 20 chr17:15734658-15734678 3.99e-03 8_[+1(1.54e-05)]_4 chr19:35632567-35632587 7.63e-02 20 chr14:23341050-23341070 8.50e-01 20 chr13:29293177-29293197 9.63e-01 20 chr19:12662436-12662456 4.87e-02 20 chr15:99395698-99395718 1.00e+00 20 chrX:128920390-128920410 1.53e-01 20 chr19:33166140-33166160 3.28e-01 20 chr6:112194716-112194736 2.04e-01 20 chr13:53495524-53495544 5.48e-03 6_[+1(7.60e-06)]_6 chr11:75864421-75864441 9.63e-01 20 chr8:8096343-8096363 2.52e-02 20 chr22:39152026-39152046 3.45e-03 [+4(3.38e-05)]_12 chr3:9885728-9885748 7.78e-01 20 chr19:4472130-4472150 9.07e-01 20 chr6:84480832-84480852 1.60e-01 20 chr16:11783340-11783360 1.49e-01 20 chr1:200849596-200849616 8.10e-01 20 chr22:33695723-33695743 1.79e-01 20 chr14:89882550-89882570 9.05e-01 20 chr16:89831463-89831483 1.80e-02 3_[+1(7.60e-06)]_9 chr19:55851068-55851088 2.60e-01 20 chr13:107188092-10718811 8.68e-01 20 chr14:76139972-76139992 3.53e-03 8_[+5(1.39e-05)]_4 chr17:46125539-46125559 5.74e-01 20 chr12:78210131-78210151 1.46e-02 3_[+1(1.54e-05)]_9 chr22:23412314-23412334 4.60e-02 4_[+4(3.38e-05)]_8 chr22:40440292-40440312 1.94e-01 20 chr5:134735135-134735155 4.53e-01 20 chr19:13215392-13215412 9.75e-01 20 chr19:1261007-1261027 4.28e-01 20 chr19:42773206-42773226 9.88e-01 20 chr22:41032789-41032809 8.79e-01 20 chr1:153895609-153895629 6.30e-01 20 chr1:151254632-151254652 6.98e-01 20 chr11:120483779-12048379 9.89e-01 20 chr12:56367649-56367669 6.76e-02 20 chr12:93323239-93323259 4.48e-01 20 chr4:157122386-157122406 6.39e-03 20 chr16:21371675-21371695 3.16e-01 20 chr15:77312858-77312878 8.41e-01 20 chr18:54199619-54199639 2.83e-01 20 chr2:20725143-20725163 1.16e-01 20 chr11:124942493-12494251 5.84e-01 20 chr8:95453048-95453068 8.96e-01 20 chr20:60813430-60813450 1.55e-01 20 chr20:45035342-45035362 5.31e-02 20 chr3:90085065-90085085 5.39e-01 20 chr2:79204871-79204891 2.17e-04 4_[+3(1.01e-05)]_8 chr15:52394331-52394351 9.80e-01 20 chr12:112432604-11243262 2.61e-01 20 chr13:82067460-82067480 8.12e-01 20 chr1:145477019-145477039 9.24e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************