******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CUX1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:128186792-12818681 1.0000 20 chr14:90108109-90108129 1.0000 20 chr3:196264358-196264378 1.0000 20 chr4:37898032-37898052 1.0000 20 chr17:65565357-65565377 1.0000 20 chr10:112262393-11226241 1.0000 20 chr2:214014213-214014233 1.0000 20 chr15:59069505-59069525 1.0000 20 chr13:41091866-41091886 1.0000 20 chr1:28454258-28454278 1.0000 20 chr5:80452778-80452798 1.0000 20 chr19:14724353-14724373 1.0000 20 chr17:1133398-1133418 1.0000 20 chr3:71060936-71060956 1.0000 20 chr7:130632779-130632799 1.0000 20 chr22:18493901-18493921 1.0000 20 chr20:47506106-47506126 1.0000 20 chr2:196552251-196552271 1.0000 20 chrX:40812698-40812718 1.0000 20 chr7:69163328-69163348 1.0000 20 chr15:83731705-83731725 1.0000 20 chr21:16056631-16056651 1.0000 20 chr2:26017552-26017572 1.0000 20 chr1:9860369-9860389 1.0000 20 chr8:128228117-128228137 1.0000 20 chr21:43705904-43705924 1.0000 20 chr19:47458160-47458180 1.0000 20 chr3:171867142-171867162 1.0000 20 chr6:106594909-106594929 1.0000 20 chr5:156642435-156642455 1.0000 20 chr11:29355579-29355599 1.0000 20 chr1:171954211-171954231 1.0000 20 chr11:128605915-12860593 1.0000 20 chr10:1020320-1020340 1.0000 20 chr10:107603706-10760372 1.0000 20 chr14:53614147-53614167 1.0000 20 chr1:90066489-90066509 1.0000 20 chr6:27840678-27840698 1.0000 20 chr8:19471965-19471985 1.0000 20 chr1:160399606-160399626 1.0000 20 chr16:76611192-76611212 1.0000 20 chr20:7212221-7212241 1.0000 20 chr18:4004538-4004558 1.0000 20 chr2:144322241-144322261 1.0000 20 chr1:236116327-236116347 1.0000 20 chr3:7247484-7247504 1.0000 20 chr4:38821989-38822009 1.0000 20 chr6:1578718-1578738 1.0000 20 chr14:71354016-71354036 1.0000 20 chr3:178387805-178387825 1.0000 20 chr4:164585126-164585146 1.0000 20 chr6:123031253-123031273 1.0000 20 chr9:5515107-5515127 1.0000 20 chr3:195913830-195913850 1.0000 20 chr14:22978631-22978651 1.0000 20 chr12:54151012-54151032 1.0000 20 chr10:126429677-12642969 1.0000 20 chr13:46197896-46197916 1.0000 20 chr6:53719680-53719700 1.0000 20 chr2:99964820-99964840 1.0000 20 chr1:119861302-119861322 1.0000 20 chr17:62134180-62134200 1.0000 20 chr1:6949116-6949136 1.0000 20 chr19:35909115-35909135 1.0000 20 chr6:24779881-24779901 1.0000 20 chr17:78883653-78883673 1.0000 20 chr16:25025731-25025751 1.0000 20 chr20:8001238-8001258 1.0000 20 chr18:72485265-72485285 1.0000 20 chr8:8555031-8555051 1.0000 20 chr8:10981797-10981817 1.0000 20 chr5:158301544-158301564 1.0000 20 chr2:242330327-242330347 1.0000 20 chr8:62581853-62581873 1.0000 20 chr9:133689881-133689901 1.0000 20 chr10:119416174-11941619 1.0000 20 chr3:106055999-106056019 1.0000 20 chr8:130560203-130560223 1.0000 20 chr8:87528224-87528244 1.0000 20 chr9:2466407-2466427 1.0000 20 chr17:32705949-32705969 1.0000 20 chr4:156681287-156681307 1.0000 20 chr2:81756167-81756187 1.0000 20 chr7:154983780-154983800 1.0000 20 chr8:59301454-59301474 1.0000 20 chr2:144226054-144226074 1.0000 20 chr12:96965453-96965473 1.0000 20 chr3:139889703-139889723 1.0000 20 chr9:114707536-114707556 1.0000 20 chr15:80311914-80311934 1.0000 20 chr10:52216661-52216681 1.0000 20 chr15:59981851-59981871 1.0000 20 chr1:17421311-17421331 1.0000 20 chr5:55565531-55565551 1.0000 20 chr3:111846623-111846643 1.0000 20 chr22:25966070-25966090 1.0000 20 chr7:26136809-26136829 1.0000 20 chr16:57015429-57015449 1.0000 20 chr3:16558648-16558668 1.0000 20 chr4:129834481-129834501 1.0000 20 chr6:34640582-34640602 1.0000 20 chr17:41595145-41595165 1.0000 20 chr7:93717223-93717243 1.0000 20 chr20:49163562-49163582 1.0000 20 chr13:61821946-61821966 1.0000 20 chr6:316641-316661 1.0000 20 chr8:134697817-134697837 1.0000 20 chr2:58262734-58262754 1.0000 20 chr13:78775713-78775733 1.0000 20 chr16:10406700-10406720 1.0000 20 chr7:120509985-120510005 1.0000 20 chr3:171515330-171515350 1.0000 20 chr1:150738234-150738254 1.0000 20 chr18:33947077-33947097 1.0000 20 chr9:88861877-88861897 1.0000 20 chr1:156478036-156478056 1.0000 20 chr5:132010938-132010958 1.0000 20 chr5:35302862-35302882 1.0000 20 chr2:187752222-187752242 1.0000 20 chr3:45729702-45729722 1.0000 20 chr2:208197291-208197311 1.0000 20 chr1:211870888-211870908 1.0000 20 chr10:98463378-98463398 1.0000 20 chr3:52058001-52058021 1.0000 20 chr2:182331582-182331602 1.0000 20 chr2:102641553-102641573 1.0000 20 chr21:43813472-43813492 1.0000 20 chr8:52563366-52563386 1.0000 20 chr11:123388404-12338842 1.0000 20 chr9:129946691-129946711 1.0000 20 chr6:227957-227977 1.0000 20 chr12:9514807-9514827 1.0000 20 chr7:28369867-28369887 1.0000 20 chr14:61906310-61906330 1.0000 20 chr13:29004366-29004386 1.0000 20 chr3:4799007-4799027 1.0000 20 chr5:88133894-88133914 1.0000 20 chr5:58887257-58887277 1.0000 20 chr6:97243620-97243640 1.0000 20 chr14:100535960-10053598 1.0000 20 chr3:149135213-149135233 1.0000 20 chr12:129302137-12930215 1.0000 20 chr9:5448615-5448635 1.0000 20 chr18:4257210-4257230 1.0000 20 chr3:44073314-44073334 1.0000 20 chr6:11467747-11467767 1.0000 20 chr1:108492621-108492641 1.0000 20 chr7:50332177-50332197 1.0000 20 chr11:111475345-11147536 1.0000 20 chr2:27255564-27255584 1.0000 20 chr2:175473329-175473349 1.0000 20 chr5:148799561-148799581 1.0000 20 chrX:19881781-19881801 1.0000 20 chr4:177334525-177334545 1.0000 20 chr8:70730734-70730754 1.0000 20 chr4:103467990-103468010 1.0000 20 chr7:130796130-130796150 1.0000 20 chr8:57075656-57075676 1.0000 20 chr17:76744408-76744428 1.0000 20 chr5:150458266-150458286 1.0000 20 chr3:111835052-111835072 1.0000 20 chr11:128169324-12816934 1.0000 20 chr17:75103126-75103146 1.0000 20 chr3:141738713-141738733 1.0000 20 chr20:11200126-11200146 1.0000 20 chr2:96822932-96822952 1.0000 20 chr1:8703801-8703821 1.0000 20 chr3:22162737-22162757 1.0000 20 chr3:190143011-190143031 1.0000 20 chr9:37402799-37402819 1.0000 20 chr16:89041278-89041298 1.0000 20 chr5:153664197-153664217 1.0000 20 chr19:7398807-7398827 1.0000 20 chrX:47493414-47493434 1.0000 20 chr4:4633094-4633114 1.0000 20 chr2:139025337-139025357 1.0000 20 chr21:42734478-42734498 1.0000 20 chr10:71867345-71867365 1.0000 20 chr21:37891347-37891367 1.0000 20 chr2:171084275-171084295 1.0000 20 chr11:69025833-69025853 1.0000 20 chr15:22936021-22936041 1.0000 20 chr6:33138106-33138126 1.0000 20 chr6:12354924-12354944 1.0000 20 chr1:59271601-59271621 1.0000 20 chr6:43306201-43306221 1.0000 20 chr8:70725810-70725830 1.0000 20 chr16:13646753-13646773 1.0000 20 chr1:238223442-238223462 1.0000 20 chr17:16311541-16311561 1.0000 20 chr12:113527434-11352745 1.0000 20 chr1:87527748-87527768 1.0000 20 chr21:32699421-32699441 1.0000 20 chr13:32470819-32470839 1.0000 20 chr14:33999699-33999719 1.0000 20 chr2:43614270-43614290 1.0000 20 chr22:28440963-28440983 1.0000 20 chrX:11783036-11783056 1.0000 20 chr2:8143207-8143227 1.0000 20 chr16:48642635-48642655 1.0000 20 chr1:52439370-52439390 1.0000 20 chr4:154419770-154419790 1.0000 20 chr22:22522285-22522305 1.0000 20 chr5:58055614-58055634 1.0000 20 chrX:46552871-46552891 1.0000 20 chr10:84674542-84674562 1.0000 20 chr11:45939765-45939785 1.0000 20 chr8:6604163-6604183 1.0000 20 chr7:70192178-70192198 1.0000 20 chr11:11473289-11473309 1.0000 20 chr5:40485460-40485480 1.0000 20 chr18:39768135-39768155 1.0000 20 chr11:57556055-57556075 1.0000 20 chr2:30440548-30440568 1.0000 20 chr7:148684187-148684207 1.0000 20 chr11:123263681-12326370 1.0000 20 chr19:18768665-18768685 1.0000 20 chr6:149081060-149081080 1.0000 20 chr3:16465615-16465635 1.0000 20 chr5:10401185-10401205 1.0000 20 chr11:85998628-85998648 1.0000 20 chr4:116871357-116871377 1.0000 20 chr7:95083944-95083964 1.0000 20 chr11:35187588-35187608 1.0000 20 chr6:88887892-88887912 1.0000 20 chr5:7794629-7794649 1.0000 20 chr14:71173958-71173978 1.0000 20 chr1:172360010-172360030 1.0000 20 chr11:46504842-46504862 1.0000 20 chr3:168795380-168795400 1.0000 20 chr4:151642460-151642480 1.0000 20 chr2:136742569-136742589 1.0000 20 chr22:31101736-31101756 1.0000 20 chr17:55910909-55910929 1.0000 20 chr4:180049529-180049549 1.0000 20 chr8:6578488-6578508 1.0000 20 chr8:103001054-103001074 1.0000 20 chr21:37885928-37885948 1.0000 20 chr10:112084750-11208477 1.0000 20 chr10:90694822-90694842 1.0000 20 chr19:18281887-18281907 1.0000 20 chr12:44825741-44825761 1.0000 20 chr22:39514059-39514079 1.0000 20 chr2:191584030-191584050 1.0000 20 chr12:46568253-46568273 1.0000 20 chr5:169098413-169098433 1.0000 20 chr1:242952282-242952302 1.0000 20 chr11:110668244-11066826 1.0000 20 chr18:29236753-29236773 1.0000 20 chr5:157987443-157987463 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_CUX1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CUX1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.2 G 0.213 T 0.295 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.2 G 0.213 T 0.295 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCCCTGGG MEME-1 width = 8 sites = 19 llr = 152 E-value = 1.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCCTGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::3:2: pos.-specific C 4899:::: probability G 3::1:a6a matrix T 221:7:2: bits 2.3 * * 2.1 * * 1.9 ** * * 1.6 *** * * Relative 1.4 *** * * Entropy 1.2 *** * * (11.6 bits) 0.9 ***** * 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CCCCTGGG consensus G A A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCTGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:17421311-17421331 5 9.42e-06 TGTC GCCCTGGG GCTGCTGG chrX:11783036-11783056 4 1.39e-05 AGT CCCCAGGG CCTACTTCA chr3:52058001-52058021 1 1.39e-05 . CCCCAGGG AGGGGATGCT chr12:46568253-46568273 9 3.80e-05 GTGAGTGT CCCCTGAG AGCA chr15:22936021-22936041 12 3.80e-05 GGGAAGTGAG CCCCTGTG T chr19:18281887-18281907 3 5.81e-05 AA GCCCTGTG GGGttttttg chr8:103001054-103001074 9 5.81e-05 CAAGAAGA GCCCTGTG GGTT chr13:32470819-32470839 1 6.48e-05 . CTCCTGGG AGCTAAAAAC chr5:148799561-148799581 11 8.88e-05 GCTCAAAACT CCCCAGAG CG chr10:1020320-1020340 10 8.88e-05 ACCGCAACT TCCCAGGG AGC chr21:37885928-37885948 5 1.03e-04 ATGC CCTCTGGG GACAAGAA chr1:172360010-172360030 9 1.03e-04 TGGTGCCT GTCCTGGG GAAT chr5:150458266-150458286 9 1.03e-04 ggaaagat gtcctggg caga chr19:7398807-7398827 11 1.08e-04 TGAATCGTCT GCCGTGGG AA chr5:58887257-58887277 13 1.46e-04 TCATTGATTT TCCCTGAG chr13:61821946-61821966 2 1.46e-04 g tccctgtg ggaaatgtgg chr2:182331582-182331602 10 1.78e-04 AATGCACGT ACCCTGAG GAG chr2:96822932-96822952 4 2.25e-04 AGC CCTCAGGG ACTTGCTGT chr5:10401185-10401205 8 3.56e-04 GAGGCAT ACCGTGGG AAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCTGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:17421311-17421331 9.4e-06 4_[+1]_8 chrX:11783036-11783056 1.4e-05 3_[+1]_9 chr3:52058001-52058021 1.4e-05 [+1]_12 chr12:46568253-46568273 3.8e-05 8_[+1]_4 chr15:22936021-22936041 3.8e-05 11_[+1]_1 chr19:18281887-18281907 5.8e-05 2_[+1]_10 chr8:103001054-103001074 5.8e-05 8_[+1]_4 chr13:32470819-32470839 6.5e-05 [+1]_12 chr5:148799561-148799581 8.9e-05 10_[+1]_2 chr10:1020320-1020340 8.9e-05 9_[+1]_3 chr21:37885928-37885948 0.0001 4_[+1]_8 chr1:172360010-172360030 0.0001 8_[+1]_4 chr5:150458266-150458286 0.0001 8_[+1]_4 chr19:7398807-7398827 0.00011 10_[+1]_2 chr5:58887257-58887277 0.00015 12_[+1] chr13:61821946-61821966 0.00015 1_[+1]_11 chr2:182331582-182331602 0.00018 9_[+1]_3 chr2:96822932-96822952 0.00023 3_[+1]_9 chr5:10401185-10401205 0.00036 7_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCTGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCCTGGG width=8 seqs=19 chr1:17421311-17421331 ( 5) GCCCTGGG 1 chrX:11783036-11783056 ( 4) CCCCAGGG 1 chr3:52058001-52058021 ( 1) CCCCAGGG 1 chr12:46568253-46568273 ( 9) CCCCTGAG 1 chr15:22936021-22936041 ( 12) CCCCTGTG 1 chr19:18281887-18281907 ( 3) GCCCTGTG 1 chr8:103001054-103001074 ( 9) GCCCTGTG 1 chr13:32470819-32470839 ( 1) CTCCTGGG 1 chr5:148799561-148799581 ( 11) CCCCAGAG 1 chr10:1020320-1020340 ( 10) TCCCAGGG 1 chr21:37885928-37885948 ( 5) CCTCTGGG 1 chr1:172360010-172360030 ( 9) GTCCTGGG 1 chr5:150458266-150458286 ( 9) GTCCTGGG 1 chr19:7398807-7398827 ( 11) GCCGTGGG 1 chr5:58887257-58887277 ( 13) TCCCTGAG 1 chr13:61821946-61821966 ( 2) TCCCTGTG 1 chr2:182331582-182331602 ( 10) ACCCTGAG 1 chr2:96822932-96822952 ( 4) CCTCAGGG 1 chr5:10401185-10401205 ( 8) ACCGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCTGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.23087 E= 1.8e-003 -147 107 57 -90 -1089 207 -1089 -90 -1089 216 -1089 -149 -1089 216 -102 -1089 -15 -1089 -1089 132 -1089 -1089 223 -1089 -47 -1089 144 -49 -1089 -1089 223 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCTGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.8e-003 0.105263 0.421053 0.315789 0.157895 0.000000 0.842105 0.000000 0.157895 0.000000 0.894737 0.000000 0.105263 0.000000 0.894737 0.105263 0.000000 0.263158 0.000000 0.000000 0.736842 0.000000 0.000000 1.000000 0.000000 0.210526 0.000000 0.578947 0.210526 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCTGGG MEME-1 regular expression -------------------------------------------------------------------------------- [CG]CCC[TA]G[GAT]G -------------------------------------------------------------------------------- Time 1.87 secs. ******************************************************************************** ******************************************************************************** MOTIF TKATYRAT MEME-2 width = 8 sites = 32 llr = 219 E-value = 5.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKATYRAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11a::4a: pos.-specific C :1::5::: probability G 34:::6:: matrix T 73:a5::a bits 2.3 2.1 1.9 * ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.2 ** *** (9.9 bits) 0.9 ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel TGATTGAT consensus GT CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKATYRAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:119861302-119861322 7 1.99e-05 ttacct tgatcgat cttgtc chr3:178387805-178387825 3 4.92e-05 AT TGATTGAT TTGCGAGAAA chr21:43705904-43705924 12 4.92e-05 attggttgat tgattgat t chr17:1133398-1133418 13 4.92e-05 attgattgac tgattgat chr15:83731705-83731725 9 9.10e-05 tggcaggg ttatcgat agct chr21:32699421-32699441 11 1.18e-04 AAAAGGGAAG TGATCAAT GG chr20:11200126-11200146 7 1.18e-04 TGGACC TGATCAAT ACATAT chr5:158301544-158301564 11 1.18e-04 ACATACAAAC TGATCAAT AG chr18:4004538-4004558 5 1.18e-04 TCAC TGATCAAT AATGTGAA chr22:31101736-31101756 12 1.80e-04 GTCATATTGT TTATTGAT C chr1:87527748-87527768 13 1.80e-04 tcttctttga ttattgat chr6:123031253-123031273 6 1.80e-04 TTGAT TTATTGAT TGTATTA chr6:106594909-106594929 8 1.80e-04 GTTCCTC TTATTGAT CTCCA chr4:180049529-180049549 7 3.44e-04 aaataa tcattgat gccaag chr11:123263681-12326370 11 3.44e-04 ttcagttcag tcattgat aa chr5:58887257-58887277 3 3.44e-04 CT TCATTGAT TTTCCCTGAG chr6:34640582-34640602 13 3.44e-04 ggaaattaaa ggatcaat chr7:130632779-130632799 11 3.44e-04 CAATAGAGAA GGATCAAT AA chr4:151642460-151642480 10 4.00e-04 AAGTACTTT GTATTGAT CAA chr17:76744408-76744428 1 4.00e-04 . GTATTGAT CATCCTGCTG chr3:7247484-7247504 8 4.00e-04 gaaatGT GTATTGAT AATAT chrX:40812698-40812718 3 4.00e-04 AG GTATTGAT TAAGCCTGAA chr10:112262393-11226241 4 4.00e-04 AGA GTATTGAT TAACTATGG chrX:46552871-46552891 4 5.38e-04 ggt taattgat tttcgataa chr6:43306201-43306221 8 5.84e-04 CTTCCTG TCATCAAT TTATT chr2:139025337-139025357 6 7.54e-04 CATGT TAATCAAT TTCTGAA chr19:47458160-47458180 10 7.54e-04 GTTTGGGCT TAATCAAT AAT chr11:111475345-11147536 4 9.51e-04 GTG AGATCAAT GCATTCATT chr8:128228117-128228137 5 9.51e-04 AATG AGATCAAT TTAAAGTG chr1:28454258-28454278 10 9.51e-04 caagatagg agatcaat aga chr11:128186792-12818681 5 1.09e-03 ttaa gaatcaat attattga chr2:175473329-175473349 10 1.40e-03 AAACCCATG TGAATGAT AGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKATYRAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:119861302-119861322 2e-05 6_[+2]_6 chr3:178387805-178387825 4.9e-05 2_[+2]_10 chr21:43705904-43705924 4.9e-05 11_[+2]_1 chr17:1133398-1133418 4.9e-05 12_[+2] chr15:83731705-83731725 9.1e-05 8_[+2]_4 chr21:32699421-32699441 0.00012 10_[+2]_2 chr20:11200126-11200146 0.00012 6_[+2]_6 chr5:158301544-158301564 0.00012 10_[+2]_2 chr18:4004538-4004558 0.00012 4_[+2]_8 chr22:31101736-31101756 0.00018 11_[+2]_1 chr1:87527748-87527768 0.00018 12_[+2] chr6:123031253-123031273 0.00018 5_[+2]_7 chr6:106594909-106594929 0.00018 7_[+2]_5 chr4:180049529-180049549 0.00034 6_[+2]_6 chr11:123263681-12326370 0.00034 10_[+2]_2 chr5:58887257-58887277 0.00034 2_[+2]_10 chr6:34640582-34640602 0.00034 12_[+2] chr7:130632779-130632799 0.00034 10_[+2]_2 chr4:151642460-151642480 0.0004 9_[+2]_3 chr17:76744408-76744428 0.0004 [+2]_12 chr3:7247484-7247504 0.0004 7_[+2]_5 chrX:40812698-40812718 0.0004 2_[+2]_10 chr10:112262393-11226241 0.0004 3_[+2]_9 chrX:46552871-46552891 0.00054 3_[+2]_9 chr6:43306201-43306221 0.00058 7_[+2]_5 chr2:139025337-139025357 0.00075 5_[+2]_7 chr19:47458160-47458180 0.00075 9_[+2]_3 chr11:111475345-11147536 0.00095 3_[+2]_9 chr8:128228117-128228137 0.00095 4_[+2]_8 chr1:28454258-28454278 0.00095 9_[+2]_3 chr11:128186792-12818681 0.0011 4_[+2]_8 chr2:175473329-175473349 0.0014 9_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKATYRAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKATYRAT width=8 seqs=32 chr1:119861302-119861322 ( 7) TGATCGAT 1 chr3:178387805-178387825 ( 3) TGATTGAT 1 chr21:43705904-43705924 ( 12) TGATTGAT 1 chr17:1133398-1133418 ( 13) TGATTGAT 1 chr15:83731705-83731725 ( 9) TTATCGAT 1 chr21:32699421-32699441 ( 11) TGATCAAT 1 chr20:11200126-11200146 ( 7) TGATCAAT 1 chr5:158301544-158301564 ( 11) TGATCAAT 1 chr18:4004538-4004558 ( 5) TGATCAAT 1 chr22:31101736-31101756 ( 12) TTATTGAT 1 chr1:87527748-87527768 ( 13) TTATTGAT 1 chr6:123031253-123031273 ( 6) TTATTGAT 1 chr6:106594909-106594929 ( 8) TTATTGAT 1 chr4:180049529-180049549 ( 7) TCATTGAT 1 chr11:123263681-12326370 ( 11) TCATTGAT 1 chr5:58887257-58887277 ( 3) TCATTGAT 1 chr6:34640582-34640602 ( 13) GGATCAAT 1 chr7:130632779-130632799 ( 11) GGATCAAT 1 chr4:151642460-151642480 ( 10) GTATTGAT 1 chr17:76744408-76744428 ( 1) GTATTGAT 1 chr3:7247484-7247504 ( 8) GTATTGAT 1 chrX:40812698-40812718 ( 3) GTATTGAT 1 chr10:112262393-11226241 ( 4) GTATTGAT 1 chrX:46552871-46552891 ( 4) TAATTGAT 1 chr6:43306201-43306221 ( 8) TCATCAAT 1 chr2:139025337-139025357 ( 6) TAATCAAT 1 chr19:47458160-47458180 ( 10) TAATCAAT 1 chr11:111475345-11147536 ( 4) AGATCAAT 1 chr8:128228117-128228137 ( 5) AGATCAAT 1 chr1:28454258-28454278 ( 10) AGATCAAT 1 chr11:128186792-12818681 ( 5) GAATCAAT 1 chr2:175473329-175473349 ( 10) TGAATGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKATYRAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.65195 E= 5.8e-003 -164 -1164 23 115 -122 -68 104 8 178 -1164 -1164 -1164 -322 -1164 -1164 172 -1164 123 -1164 85 48 -1164 148 -1164 178 -1164 -1164 -1164 -1164 -1164 -1164 176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKATYRAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 5.8e-003 0.093750 0.000000 0.250000 0.656250 0.125000 0.125000 0.437500 0.312500 1.000000 0.000000 0.000000 0.000000 0.031250 0.000000 0.000000 0.968750 0.000000 0.468750 0.000000 0.531250 0.406250 0.000000 0.593750 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKATYRAT MEME-2 regular expression -------------------------------------------------------------------------------- [TG][GT]AT[TC][GA]AT -------------------------------------------------------------------------------- Time 4.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCTCCA MEME-3 width = 8 sites = 2 llr = 23 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCTCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :aaa:aa: probability G :::::::: matrix T a:::a::: bits 2.3 *** ** 2.1 *** ** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCCCTCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:70192178-70192198 6 8.13e-06 ACAAT TCCCTCCA GGCCAGC chr10:126429677-12642969 12 8.13e-06 TTAAAGAGAG TCCCTCCA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:70192178-70192198 8.1e-06 5_[+3]_7 chr10:126429677-12642969 8.1e-06 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCTCCA width=8 seqs=2 chr7:70192178-70192198 ( 6) TCCCTCCA 1 chr10:126429677-12642969 ( 12) TCCCTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.1e+003 -765 -765 -765 176 -765 232 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 -765 -765 176 -765 232 -765 -765 -765 232 -765 -765 177 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.1e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTCCA MEME-3 regular expression -------------------------------------------------------------------------------- TCCCTCCA -------------------------------------------------------------------------------- Time 7.29 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRAASWG MEME-4 width = 8 sites = 19 llr = 140 E-value = 3.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRAASWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 8:497:6: pos.-specific C :::1:6:2 probability G 2a6::4:8 matrix T ::::3:4: bits 2.3 * 2.1 * 1.9 * 1.6 * * Relative 1.4 * * * * Entropy 1.2 **** * * (10.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGAACAG consensus G A TGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAASWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:26136809-26136829 3 1.41e-05 TC AGGAACAG AGAAGTCATC chr2:27255564-27255584 8 6.25e-05 GAAAAAC AGAAACAG TTCTA chr9:5448615-5448635 8 6.25e-05 GAAGGGT AGAAACAG GTGGG chr6:316641-316661 7 6.25e-05 AAAAAA AGAAACAG AACTCT chr18:4257210-4257230 4 1.02e-04 ATA AGGAAGTG AGAGAAATA chr18:72485265-72485285 13 1.02e-04 AGTATGAAAG AGGAAGTG chr19:35909115-35909135 8 1.02e-04 GATTTGT GGGAACAG ACTTT chr5:7794629-7794649 9 1.23e-04 CCTGAGCA AGAAAGAG AGGC chr9:114707536-114707556 8 1.42e-04 ATCTGGG AGAAACTG ATCAA chr16:89041278-89041298 10 1.68e-04 CTGGGGTAC AGGATGAG AAG chr6:1578718-1578738 9 1.68e-04 ATAAATTG AGGATGAG GCAT chr2:136742569-136742589 11 2.60e-04 CTAAAGCATT AGGAACAC GA chr15:22936021-22936041 2 2.97e-04 G GGGAAGTG AGCCCCTGTG chr1:211870888-211870908 13 3.94e-04 cctgctcatc agaatctg chr20:7212221-7212241 10 3.94e-04 AGTCTAAAG GGAAACTG AAG chr17:75103126-75103146 6 5.30e-04 CATCA AGGATCAC TTAAGTA chr4:103467990-103468010 10 5.30e-04 agcctaggg ggaatcag aag chr16:76611192-76611212 1 5.30e-04 . AGGAAGTC ATCTCAGTAT chr11:128605915-12860593 6 5.89e-04 TCTTT AGGCAGAG ATTCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAASWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:26136809-26136829 1.4e-05 2_[+4]_10 chr2:27255564-27255584 6.2e-05 7_[+4]_5 chr9:5448615-5448635 6.2e-05 7_[+4]_5 chr6:316641-316661 6.2e-05 6_[+4]_6 chr18:4257210-4257230 0.0001 3_[+4]_9 chr18:72485265-72485285 0.0001 12_[+4] chr19:35909115-35909135 0.0001 7_[+4]_5 chr5:7794629-7794649 0.00012 8_[+4]_4 chr9:114707536-114707556 0.00014 7_[+4]_5 chr16:89041278-89041298 0.00017 9_[+4]_3 chr6:1578718-1578738 0.00017 8_[+4]_4 chr2:136742569-136742589 0.00026 10_[+4]_2 chr15:22936021-22936041 0.0003 1_[+4]_11 chr1:211870888-211870908 0.00039 12_[+4] chr20:7212221-7212241 0.00039 9_[+4]_3 chr17:75103126-75103146 0.00053 5_[+4]_7 chr4:103467990-103468010 0.00053 9_[+4]_3 chr16:76611192-76611212 0.00053 [+4]_12 chr11:128605915-12860593 0.00059 5_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAASWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRAASWG width=8 seqs=19 chr7:26136809-26136829 ( 3) AGGAACAG 1 chr2:27255564-27255584 ( 8) AGAAACAG 1 chr9:5448615-5448635 ( 8) AGAAACAG 1 chr6:316641-316661 ( 7) AGAAACAG 1 chr18:4257210-4257230 ( 4) AGGAAGTG 1 chr18:72485265-72485285 ( 13) AGGAAGTG 1 chr19:35909115-35909135 ( 8) GGGAACAG 1 chr5:7794629-7794649 ( 9) AGAAAGAG 1 chr9:114707536-114707556 ( 8) AGAAACTG 1 chr16:89041278-89041298 ( 10) AGGATGAG 1 chr6:1578718-1578738 ( 9) AGGATGAG 1 chr2:136742569-136742589 ( 11) AGGAACAC 1 chr15:22936021-22936041 ( 2) GGGAAGTG 1 chr1:211870888-211870908 ( 13) AGAATCTG 1 chr20:7212221-7212241 ( 10) GGAAACTG 1 chr17:75103126-75103146 ( 6) AGGATCAC 1 chr4:103467990-103468010 ( 10) GGAATCAG 1 chr16:76611192-76611212 ( 1) AGGAAGTC 1 chr11:128605915-12860593 ( 6) AGGCAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAASWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.60572 E= 3.3e+003 144 -1089 -2 -1089 -1089 -1089 223 -1089 53 -1089 144 -1089 170 -192 -1089 -1089 134 -1089 -1089 -16 -1089 153 98 -1089 111 -1089 -1089 32 -1089 -34 198 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAASWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 3.3e+003 0.789474 0.000000 0.210526 0.000000 0.000000 0.000000 1.000000 0.000000 0.421053 0.000000 0.578947 0.000000 0.947368 0.052632 0.000000 0.000000 0.736842 0.000000 0.000000 0.263158 0.000000 0.578947 0.421053 0.000000 0.631579 0.000000 0.000000 0.368421 0.000000 0.157895 0.842105 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAASWG MEME-4 regular expression -------------------------------------------------------------------------------- [AG]G[GA]A[AT][CG][AT]G -------------------------------------------------------------------------------- Time 10.15 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCCTG MEME-5 width = 8 sites = 4 llr = 44 E-value = 9.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3a::aa:: probability G 8::a::3a matrix T ::a:::8: bits 2.3 * *** * 2.1 * *** * 1.9 ***** * 1.6 ***** * Relative 1.4 ****** * Entropy 1.2 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCCTG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:30440548-30440568 4 6.73e-06 AGG GCTGCCTG CAAGGCCCA chr6:227957-227977 13 6.73e-06 ataggcggca gctgcctg chr4:156681287-156681307 6 1.16e-05 AACGC GCTGCCGG CGCTCCC chr3:195913830-195913850 7 1.79e-05 AAGCCG CCTGCCTG GGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:30440548-30440568 6.7e-06 3_[+5]_9 chr6:227957-227977 6.7e-06 12_[+5] chr4:156681287-156681307 1.2e-05 5_[+5]_7 chr3:195913830-195913850 1.8e-05 6_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCCTG width=8 seqs=4 chr2:30440548-30440568 ( 4) GCTGCCTG 1 chr6:227957-227977 ( 13) GCTGCCTG 1 chr4:156681287-156681307 ( 6) GCTGCCGG 1 chr3:195913830-195913850 ( 7) CCTGCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 9.8e+002 -865 32 181 -865 -865 232 -865 -865 -865 -865 -865 176 -865 -865 223 -865 -865 232 -865 -865 -865 232 -865 -865 -865 -865 23 134 -865 -865 223 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 9.8e+002 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCCTG MEME-5 regular expression -------------------------------------------------------------------------------- [GC]CTGCC[TG]G -------------------------------------------------------------------------------- Time 13.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:128186792-12818681 1.72e-01 20 chr14:90108109-90108129 2.43e-01 20 chr3:196264358-196264378 7.44e-01 20 chr4:37898032-37898052 3.38e-01 20 chr17:65565357-65565377 3.50e-01 20 chr10:112262393-11226241 3.47e-01 20 chr2:214014213-214014233 1.92e-01 20 chr15:59069505-59069525 9.23e-01 20 chr13:41091866-41091886 1.20e-01 20 chr1:28454258-28454278 3.01e-01 20 chr5:80452778-80452798 9.10e-01 20 chr19:14724353-14724373 4.24e-02 20 chr17:1133398-1133418 1.70e-02 [+2(4.92e-05)]_4_[+2(4.92e-05)] chr3:71060936-71060956 5.99e-01 20 chr7:130632779-130632799 6.46e-02 20 chr22:18493901-18493921 2.79e-01 20 chr20:47506106-47506126 2.60e-01 20 chr2:196552251-196552271 9.59e-01 20 chrX:40812698-40812718 3.09e-02 20 chr7:69163328-69163348 9.15e-01 20 chr15:83731705-83731725 4.96e-02 8_[+2(9.10e-05)]_4 chr21:16056631-16056651 7.59e-01 20 chr2:26017552-26017572 2.52e-01 20 chr1:9860369-9860389 3.79e-01 20 chr8:128228117-128228137 2.97e-01 20 chr21:43705904-43705924 2.70e-02 7_[+2(4.92e-05)]_5 chr19:47458160-47458180 3.25e-01 20 chr3:171867142-171867162 4.31e-02 20 chr6:106594909-106594929 4.62e-02 20 chr5:156642435-156642455 9.64e-01 20 chr11:29355579-29355599 7.23e-01 20 chr1:171954211-171954231 9.37e-01 20 chr11:128605915-12860593 1.12e-01 20 chr10:1020320-1020340 4.83e-02 9_[+1(8.88e-05)]_3 chr10:107603706-10760372 3.49e-01 20 chr14:53614147-53614167 8.83e-01 20 chr1:90066489-90066509 8.21e-01 20 chr6:27840678-27840698 4.66e-01 20 chr8:19471965-19471985 4.30e-01 20 chr1:160399606-160399626 6.11e-01 20 chr16:76611192-76611212 1.18e-01 20 chr20:7212221-7212241 1.96e-01 20 chr18:4004538-4004558 3.12e-02 20 chr2:144322241-144322261 8.83e-01 20 chr1:236116327-236116347 7.80e-01 20 chr3:7247484-7247504 1.45e-01 20 chr4:38821989-38822009 8.56e-01 20 chr6:1578718-1578738 5.35e-02 20 chr14:71354016-71354036 9.24e-01 20 chr3:178387805-178387825 4.14e-02 2_[+2(4.92e-05)]_10 chr4:164585126-164585146 3.13e-01 20 chr6:123031253-123031273 1.31e-01 20 chr9:5515107-5515127 2.98e-01 20 chr3:195913830-195913850 3.17e-03 6_[+5(1.79e-05)]_6 chr14:22978631-22978651 6.27e-01 20 chr12:54151012-54151032 6.32e-02 20 chr10:126429677-12642969 6.11e-03 11_[+3(8.13e-06)]_1 chr13:46197896-46197916 5.20e-01 20 chr6:53719680-53719700 8.53e-01 20 chr2:99964820-99964840 7.25e-01 20 chr1:119861302-119861322 1.76e-02 6_[+2(1.99e-05)]_6 chr17:62134180-62134200 5.92e-01 20 chr1:6949116-6949136 9.16e-01 20 chr19:35909115-35909135 1.21e-02 20 chr6:24779881-24779901 8.02e-01 20 chr17:78883653-78883673 7.25e-01 20 chr16:25025731-25025751 6.17e-01 20 chr20:8001238-8001258 9.84e-01 20 chr18:72485265-72485285 1.38e-01 20 chr8:8555031-8555051 7.05e-01 20 chr8:10981797-10981817 3.86e-01 20 chr5:158301544-158301564 2.39e-02 20 chr2:242330327-242330347 9.50e-01 20 chr8:62581853-62581873 3.40e-01 20 chr9:133689881-133689901 3.25e-01 20 chr10:119416174-11941619 6.35e-01 20 chr3:106055999-106056019 2.22e-01 20 chr8:130560203-130560223 3.58e-01 20 chr8:87528224-87528244 4.35e-01 20 chr9:2466407-2466427 8.34e-01 20 chr17:32705949-32705969 7.98e-01 20 chr4:156681287-156681307 5.46e-03 5_[+5(1.16e-05)]_7 chr2:81756167-81756187 1.34e-01 20 chr7:154983780-154983800 8.54e-01 20 chr8:59301454-59301474 5.64e-01 20 chr2:144226054-144226074 9.97e-01 20 chr12:96965453-96965473 7.67e-01 20 chr3:139889703-139889723 9.18e-02 20 chr9:114707536-114707556 2.61e-02 20 chr15:80311914-80311934 4.59e-01 20 chr10:52216661-52216681 5.30e-01 20 chr15:59981851-59981871 7.42e-01 20 chr1:17421311-17421331 5.22e-04 4_[+1(9.42e-06)]_8 chr5:55565531-55565551 2.97e-01 20 chr3:111846623-111846643 9.12e-01 20 chr22:25966070-25966090 2.31e-01 20 chr7:26136809-26136829 2.99e-02 2_[+4(1.41e-05)]_10 chr16:57015429-57015449 2.75e-01 20 chr3:16558648-16558668 8.84e-01 20 chr4:129834481-129834501 2.81e-01 20 chr6:34640582-34640602 6.37e-02 20 chr17:41595145-41595165 1.97e-01 20 chr7:93717223-93717243 8.56e-02 20 chr20:49163562-49163582 4.35e-01 20 chr13:61821946-61821966 2.40e-03 20 chr6:316641-316661 1.45e-01 6_[+4(6.25e-05)]_6 chr8:134697817-134697837 6.24e-01 20 chr2:58262734-58262754 6.36e-02 20 chr13:78775713-78775733 2.15e-02 20 chr16:10406700-10406720 4.53e-01 20 chr7:120509985-120510005 1.61e-01 20 chr3:171515330-171515350 2.76e-01 20 chr1:150738234-150738254 4.22e-01 20 chr18:33947077-33947097 7.73e-01 20 chr9:88861877-88861897 2.13e-01 20 chr1:156478036-156478056 5.94e-01 20 chr5:132010938-132010958 8.82e-01 20 chr5:35302862-35302882 8.75e-01 20 chr2:187752222-187752242 7.99e-01 20 chr3:45729702-45729722 2.93e-01 20 chr2:208197291-208197311 5.51e-01 20 chr1:211870888-211870908 1.47e-02 20 chr10:98463378-98463398 3.11e-01 20 chr3:52058001-52058021 7.40e-03 [+1(1.39e-05)]_12 chr2:182331582-182331602 5.12e-02 20 chr2:102641553-102641573 5.16e-01 20 chr21:43813472-43813492 2.57e-01 20 chr8:52563366-52563386 4.66e-01 20 chr11:123388404-12338842 3.76e-01 20 chr9:129946691-129946711 7.07e-02 20 chr6:227957-227977 1.48e-02 12_[+5(6.73e-06)] chr12:9514807-9514827 7.89e-01 20 chr7:28369867-28369887 5.31e-01 20 chr14:61906310-61906330 1.47e-02 20 chr13:29004366-29004386 1.35e-01 20 chr3:4799007-4799027 3.42e-01 20 chr5:88133894-88133914 1.07e-01 20 chr5:58887257-58887277 7.12e-04 20 chr6:97243620-97243640 6.64e-01 20 chr14:100535960-10053598 5.02e-02 20 chr3:149135213-149135233 2.86e-01 20 chr12:129302137-12930215 4.08e-01 20 chr9:5448615-5448635 7.29e-02 7_[+4(6.25e-05)]_5 chr18:4257210-4257230 8.02e-02 20 chr3:44073314-44073334 1.84e-01 20 chr6:11467747-11467767 3.67e-01 20 chr1:108492621-108492641 5.64e-02 20 chr7:50332177-50332197 2.87e-02 20 chr11:111475345-11147536 1.48e-01 20 chr2:27255564-27255584 8.27e-02 7_[+4(6.25e-05)]_5 chr2:175473329-175473349 6.02e-02 20 chr5:148799561-148799581 1.48e-02 10_[+1(8.88e-05)]_2 chrX:19881781-19881801 3.38e-02 20 chr4:177334525-177334545 9.32e-01 20 chr8:70730734-70730754 7.51e-01 20 chr4:103467990-103468010 3.52e-02 20 chr7:130796130-130796150 9.59e-01 20 chr8:57075656-57075676 4.88e-01 20 chr17:76744408-76744428 9.45e-03 20 chr5:150458266-150458286 1.21e-02 20 chr3:111835052-111835072 3.11e-01 20 chr11:128169324-12816934 3.41e-01 20 chr17:75103126-75103146 3.22e-02 20 chr3:141738713-141738733 9.55e-01 20 chr20:11200126-11200146 1.48e-02 20 chr2:96822932-96822952 7.89e-03 20 chr1:8703801-8703821 5.40e-01 20 chr3:22162737-22162757 7.29e-01 20 chr3:190143011-190143031 5.42e-01 20 chr9:37402799-37402819 7.90e-01 20 chr16:89041278-89041298 9.12e-02 20 chr5:153664197-153664217 7.78e-01 20 chr19:7398807-7398827 1.88e-02 20 chrX:47493414-47493434 5.40e-01 20 chr4:4633094-4633114 7.51e-01 20 chr2:139025337-139025357 1.84e-01 20 chr21:42734478-42734498 5.93e-01 20 chr10:71867345-71867365 3.68e-01 20 chr21:37891347-37891367 4.02e-01 20 chr2:171084275-171084295 1.25e-02 20 chr11:69025833-69025853 2.63e-01 20 chr15:22936021-22936041 8.36e-04 11_[+1(3.80e-05)]_1 chr6:33138106-33138126 2.03e-01 20 chr6:12354924-12354944 1.45e-01 20 chr1:59271601-59271621 5.57e-01 20 chr6:43306201-43306221 2.78e-02 20 chr8:70725810-70725830 6.88e-01 20 chr16:13646753-13646773 7.67e-01 20 chr1:238223442-238223462 1.00e+00 20 chr17:16311541-16311561 4.23e-01 20 chr12:113527434-11352745 6.47e-02 20 chr1:87527748-87527768 6.71e-02 20 chr21:32699421-32699441 4.34e-03 20 chr13:32470819-32470839 3.25e-02 [+1(6.48e-05)]_12 chr14:33999699-33999719 7.51e-01 20 chr2:43614270-43614290 4.23e-01 20 chr22:28440963-28440983 1.17e-02 20 chrX:11783036-11783056 1.63e-02 3_[+1(1.39e-05)]_9 chr2:8143207-8143227 8.94e-01 20 chr16:48642635-48642655 6.86e-01 20 chr1:52439370-52439390 9.74e-01 20 chr4:154419770-154419790 2.64e-01 20 chr22:22522285-22522305 1.11e-01 20 chr5:58055614-58055634 7.32e-01 20 chrX:46552871-46552891 3.43e-01 20 chr10:84674542-84674562 7.55e-01 20 chr11:45939765-45939785 2.44e-01 20 chr8:6604163-6604183 5.09e-01 20 chr7:70192178-70192198 1.23e-03 5_[+3(8.13e-06)]_7 chr11:11473289-11473309 7.57e-01 20 chr5:40485460-40485480 4.98e-01 20 chr18:39768135-39768155 8.74e-01 20 chr11:57556055-57556075 3.03e-01 20 chr2:30440548-30440568 8.69e-04 3_[+5(6.73e-06)]_9 chr7:148684187-148684207 3.45e-01 20 chr11:123263681-12326370 5.51e-02 20 chr19:18768665-18768685 1.02e-01 20 chr6:149081060-149081080 5.36e-02 20 chr3:16465615-16465635 2.84e-01 20 chr5:10401185-10401205 7.79e-02 20 chr11:85998628-85998648 3.08e-01 20 chr4:116871357-116871377 6.47e-01 20 chr7:95083944-95083964 9.97e-01 20 chr11:35187588-35187608 7.61e-01 20 chr6:88887892-88887912 7.49e-01 20 chr5:7794629-7794649 1.03e-01 20 chr14:71173958-71173978 3.18e-02 20 chr1:172360010-172360030 2.10e-03 20 chr11:46504842-46504862 2.48e-01 20 chr3:168795380-168795400 8.71e-01 20 chr4:151642460-151642480 2.20e-01 20 chr2:136742569-136742589 2.27e-01 20 chr22:31101736-31101756 2.11e-01 20 chr17:55910909-55910929 9.10e-01 20 chr4:180049529-180049549 5.63e-02 20 chr8:6578488-6578508 9.27e-01 20 chr8:103001054-103001074 1.91e-03 8_[+1(5.81e-05)]_4 chr21:37885928-37885948 5.15e-03 20 chr10:112084750-11208477 4.24e-01 20 chr10:90694822-90694842 4.83e-01 20 chr19:18281887-18281907 1.37e-02 2_[+1(5.81e-05)]_10 chr12:44825741-44825761 6.84e-01 20 chr22:39514059-39514079 7.85e-01 20 chr2:191584030-191584050 3.20e-01 20 chr12:46568253-46568273 9.59e-03 8_[+1(3.80e-05)]_4 chr5:169098413-169098433 8.37e-01 20 chr1:242952282-242952302 8.85e-01 20 chr11:110668244-11066826 1.59e-01 20 chr18:29236753-29236773 7.71e-02 20 chr5:157987443-157987463 3.12e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************