******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CTCF.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:73140234-73140254 1.0000 20 chr1:112912465-112912485 1.0000 20 chr2:60901873-60901893 1.0000 20 chr17:34985903-34985923 1.0000 20 chr11:78356433-78356453 1.0000 20 chr1:159906364-159906384 1.0000 20 chr22:46763689-46763709 1.0000 20 chr10:102921662-10292168 1.0000 20 chr7:150821185-150821205 1.0000 20 chr17:43717902-43717922 1.0000 20 chrX:104167005-104167025 1.0000 20 chr12:54973660-54973680 1.0000 20 chr1:17036443-17036463 1.0000 20 chr10:71275557-71275577 1.0000 20 chr1:34098810-34098830 1.0000 20 chr2:10972614-10972634 1.0000 20 chr2:73089830-73089850 1.0000 20 chr3:51703465-51703485 1.0000 20 chr15:68966520-68966540 1.0000 20 chr2:105986417-105986437 1.0000 20 chr1:27627453-27627473 1.0000 20 chr17:34074665-34074685 1.0000 20 chr8:74086735-74086755 1.0000 20 chr1:46035920-46035940 1.0000 20 chr1:16947696-16947716 1.0000 20 chr8:38268326-38268346 1.0000 20 chr11:20132600-20132620 1.0000 20 chr1:110596622-110596642 1.0000 20 chr19:42104110-42104130 1.0000 20 chr7:31023383-31023403 1.0000 20 chr9:34379510-34379530 1.0000 20 chr1:16951567-16951587 1.0000 20 chr2:43056152-43056172 1.0000 20 chr10:104343745-10434376 1.0000 20 chr17:36571128-36571148 1.0000 20 chr6:44064623-44064643 1.0000 20 chr5:1645180-1645200 1.0000 20 chr1:15427047-15427067 1.0000 20 chr1:46993872-46993892 1.0000 20 chr1:7727765-7727785 1.0000 20 chr4:83660639-83660659 1.0000 20 chr16:57118313-57118333 1.0000 20 chr7:76145408-76145428 1.0000 20 chr15:74257260-74257280 1.0000 20 chr8:9688642-9688662 1.0000 20 chr15:45455409-45455429 1.0000 20 chr22:37713052-37713072 1.0000 20 chr17:42852328-42852348 1.0000 20 chr19:4804089-4804109 1.0000 20 chr9:139118129-139118149 1.0000 20 chr1:32059768-32059788 1.0000 20 chr11:74991365-74991385 1.0000 20 chr7:18705938-18705958 1.0000 20 chr3:38159643-38159663 1.0000 20 chr14:105837315-10583733 1.0000 20 chr14:69378481-69378501 1.0000 20 chr11:72296903-72296923 1.0000 20 chr15:63385955-63385975 1.0000 20 chr10:79807212-79807232 1.0000 20 chr1:222628650-222628670 1.0000 20 chr9:124885428-124885448 1.0000 20 chr20:37676870-37676890 1.0000 20 chr10:73468156-73468176 1.0000 20 chr15:33993084-33993104 1.0000 20 chr2:136555233-136555253 1.0000 20 chr1:168051665-168051685 1.0000 20 chr11:7687141-7687161 1.0000 20 chr11:61666755-61666775 1.0000 20 chr8:141647652-141647672 1.0000 20 chr14:55240900-55240920 1.0000 20 chr2:113357762-113357782 1.0000 20 chr1:45118714-45118734 1.0000 20 chr16:2551369-2551389 1.0000 20 chr2:218650347-218650367 1.0000 20 chr12:125667864-12566788 1.0000 20 chr9:95397162-95397182 1.0000 20 chr3:45079367-45079387 1.0000 20 chr17:48164998-48165018 1.0000 20 chr22:46938367-46938387 1.0000 20 chr5:176087965-176087985 1.0000 20 chr3:137787595-137787615 1.0000 20 chr8:135698004-135698024 1.0000 20 chr5:139013036-139013056 1.0000 20 chr16:2977220-2977240 1.0000 20 chr19:17966555-17966575 1.0000 20 chr11:44560206-44560226 1.0000 20 chr11:92967952-92967972 1.0000 20 chr15:45145717-45145737 1.0000 20 chr2:9939969-9939989 1.0000 20 chr12:118275222-11827524 1.0000 20 chr17:17259543-17259563 1.0000 20 chr1:15757809-15757829 1.0000 20 chr16:11012782-11012802 1.0000 20 chr1:9927710-9927730 1.0000 20 chr3:70169703-70169723 1.0000 20 chr17:18120889-18120909 1.0000 20 chr7:50485927-50485947 1.0000 20 chr1:55743389-55743409 1.0000 20 chr22:23881951-23881971 1.0000 20 chr15:70805278-70805298 1.0000 20 chr12:103969219-10396923 1.0000 20 chr3:192162482-192162502 1.0000 20 chr17:40115159-40115179 1.0000 20 chr22:29641686-29641706 1.0000 20 chr11:4658290-4658310 1.0000 20 chr13:100308544-10030856 1.0000 20 chr1:212185474-212185494 1.0000 20 chr17:30580222-30580242 1.0000 20 chr3:25938703-25938723 1.0000 20 chr15:75242904-75242924 1.0000 20 chr12:54095731-54095751 1.0000 20 chr2:70875199-70875219 1.0000 20 chr12:29470903-29470923 1.0000 20 chr11:131544031-13154405 1.0000 20 chr2:217531505-217531525 1.0000 20 chr2:85906482-85906502 1.0000 20 chr14:74829195-74829215 1.0000 20 chr10:30681603-30681623 1.0000 20 chr5:153990072-153990092 1.0000 20 chr3:116489852-116489872 1.0000 20 chr15:89448143-89448163 1.0000 20 chr11:62192345-62192365 1.0000 20 chr1:110648919-110648939 1.0000 20 chr10:104238881-10423890 1.0000 20 chr20:34790921-34790941 1.0000 20 chr9:93677347-93677367 1.0000 20 chr12:131589374-13158939 1.0000 20 chr12:3182742-3182762 1.0000 20 chr2:85512758-85512778 1.0000 20 chr10:104594866-10459488 1.0000 20 chr7:131198456-131198476 1.0000 20 chr10:5671969-5671989 1.0000 20 chr1:11702655-11702675 1.0000 20 chr13:96130946-96130966 1.0000 20 chr6:36727117-36727137 1.0000 20 chr1:11898894-11898914 1.0000 20 chr10:11800094-11800114 1.0000 20 chr12:5131793-5131813 1.0000 20 chr15:42281878-42281898 1.0000 20 chr2:110267875-110267895 1.0000 20 chr18:74111027-74111047 1.0000 20 chr14:105556984-10555700 1.0000 20 chr20:937261-937281 1.0000 20 chr13:30082445-30082465 1.0000 20 chr22:20144690-20144710 1.0000 20 chr18:8988442-8988462 1.0000 20 chr10:86024511-86024531 1.0000 20 chr6:35209055-35209075 1.0000 20 chr5:133520029-133520049 1.0000 20 chr3:156957077-156957097 1.0000 20 chr9:134631158-134631178 1.0000 20 chr1:11954174-11954194 1.0000 20 chr19:49804699-49804719 1.0000 20 chr9:34899728-34899748 1.0000 20 chr7:105683416-105683436 1.0000 20 chr11:17620673-17620693 1.0000 20 chr19:41104661-41104681 1.0000 20 chr19:33634967-33634987 1.0000 20 chr6:43635127-43635147 1.0000 20 chr11:44308020-44308040 1.0000 20 chr17:66432710-66432730 1.0000 20 chr5:174961232-174961252 1.0000 20 chr9:101737361-101737381 1.0000 20 chr16:68362700-68362720 1.0000 20 chr7:105817281-105817301 1.0000 20 chr7:30780239-30780259 1.0000 20 chr19:12958562-12958582 1.0000 20 chr20:23587379-23587399 1.0000 20 chr11:122667015-12266703 1.0000 20 chr1:21596869-21596889 1.0000 20 chr2:97466890-97466910 1.0000 20 chr11:73006658-73006678 1.0000 20 chr1:110319630-110319650 1.0000 20 chr10:79479489-79479509 1.0000 20 chr3:140911291-140911311 1.0000 20 chr22:37853533-37853553 1.0000 20 chr21:27174024-27174044 1.0000 20 chr1:116138634-116138654 1.0000 20 chr9:35696724-35696744 1.0000 20 chr1:26743693-26743713 1.0000 20 chr7:105697544-105697564 1.0000 20 chr10:96892858-96892878 1.0000 20 chr1:109820227-109820247 1.0000 20 chr7:30978544-30978564 1.0000 20 chrX:132926645-132926665 1.0000 20 chr13:20737700-20737720 1.0000 20 chr17:48860677-48860697 1.0000 20 chr22:45974051-45974071 1.0000 20 chr6:29815987-29816007 1.0000 20 chr3:134027381-134027401 1.0000 20 chr10:79471349-79471369 1.0000 20 chr11:47174810-47174830 1.0000 20 chr6:33216239-33216259 1.0000 20 chr15:74615094-74615114 1.0000 20 chr7:73831888-73831908 1.0000 20 chr1:66708528-66708548 1.0000 20 chr7:127849998-127850018 1.0000 20 chr16:55499157-55499177 1.0000 20 chr1:91630996-91631016 1.0000 20 chr15:45410469-45410489 1.0000 20 chr19:34269082-34269102 1.0000 20 chr15:74927664-74927684 1.0000 20 chr3:50653526-50653546 1.0000 20 chr1:23730617-23730637 1.0000 20 chr7:131374052-131374072 1.0000 20 chr16:67011732-67011752 1.0000 20 chr7:123264806-123264826 1.0000 20 chr3:17882898-17882918 1.0000 20 chr10:102193717-10219373 1.0000 20 chr22:45831739-45831759 1.0000 20 chr9:129263321-129263341 1.0000 20 chr15:74913581-74913601 1.0000 20 chr3:142547715-142547735 1.0000 20 chr8:57154656-57154676 1.0000 20 chr2:219894568-219894588 1.0000 20 chr3:14675497-14675517 1.0000 20 chr10:97134549-97134569 1.0000 20 chr5:175156972-175156992 1.0000 20 chr1:211828716-211828736 1.0000 20 chr12:57576924-57576944 1.0000 20 chr6:37659965-37659985 1.0000 20 chr8:142397024-142397044 1.0000 20 chr1:1837855-1837875 1.0000 20 chr19:33897918-33897938 1.0000 20 chr4:1345808-1345828 1.0000 20 chr1:43994964-43994984 1.0000 20 chr3:197633014-197633034 1.0000 20 chr2:241790800-241790820 1.0000 20 chr7:35577208-35577228 1.0000 20 chr17:7259500-7259520 1.0000 20 chr2:120399314-120399334 1.0000 20 chr8:6698322-6698342 1.0000 20 chr19:42800372-42800392 1.0000 20 chr18:46201785-46201805 1.0000 20 chr9:101610996-101611016 1.0000 20 chr2:7237555-7237575 1.0000 20 chr9:115555681-115555701 1.0000 20 chr11:117297094-11729711 1.0000 20 chr14:105175140-10517516 1.0000 20 chr13:77477874-77477894 1.0000 20 chr8:102339352-102339372 1.0000 20 chr13:113597192-11359721 1.0000 20 chr1:43693099-43693119 1.0000 20 chr11:65585842-65585862 1.0000 20 chr17:34476518-34476538 1.0000 20 chr17:26207225-26207245 1.0000 20 chr10:99332175-99332195 1.0000 20 chr1:155959345-155959365 1.0000 20 chr16:57610449-57610469 1.0000 20 chr2:86041503-86041523 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_CTCF/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CTCF.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.188 C 0.319 G 0.306 T 0.187 Background letter frequencies (from file dataset with add-one prior applied): A 0.188 C 0.319 G 0.306 T 0.187 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CWGGTGGC MEME-1 width = 8 sites = 126 llr = 761 E-value = 6.3e-093 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGGTGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1522:::1 pos.-specific C 7::2:::7 probability G ::762aa: matrix T 25::8::2 bits 2.4 2.2 1.9 1.7 ** Relative 1.5 * *** Entropy 1.2 * *** (8.7 bits) 1.0 ** *** 0.7 *** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGGTGGC consensus TAA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGTGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:99332175-99332195 4 3.14e-05 CAG CAGGTGGC ACTGTCATC chr2:7237555-7237575 7 3.14e-05 GGTCAG CAGGTGGC GCGCGA chr9:101610996-101611016 13 3.14e-05 gagcagccag caggtggc chr6:29815987-29816007 8 3.14e-05 AGACCGC CAGGTGGC GCCGC chr22:45974051-45974071 12 3.14e-05 GCCTGGCCTC CAGGTGGC G chr10:30681603-30681623 3 3.14e-05 TG CAGGTGGC ACCAGAGCAA chr17:40115159-40115179 11 3.14e-05 CTCAGAACAG CAGGTGGC AG chr1:15757809-15757829 5 3.14e-05 CCCC CAGGTGGC CAGGGATG chr2:43056152-43056172 12 3.14e-05 GTGGCGCCAG CAGGTGGC A chr7:31023383-31023403 6 3.14e-05 GCCAC CAGGTGGC AGTCTAA chr1:110596622-110596642 9 3.14e-05 TCCCCCAC CAGGTGGC AGCA chr22:46763689-46763709 13 3.14e-05 CCCCAGCAGC CAGGTGGC chr7:30780239-30780259 8 6.26e-05 CTGCCCT CTGGTGGC CATGG chr12:118275222-11827524 2 6.26e-05 C CTGGTGGC CAAACATGAC chr1:32059768-32059788 6 6.26e-05 GCCCC CTGGTGGC TGAGTCC chr1:46993872-46993892 8 6.26e-05 GTGCCCT CTGGTGGC AGTCC chr3:51703465-51703485 3 6.26e-05 TC CTGGTGGC CAGCCGCTGC chr11:117297094-11729711 8 8.18e-05 CGACCTG CAGATGGC GTGCG chr5:133520029-133520049 10 8.18e-05 TCTGACCAA CAGATGGC ACC chr22:20144690-20144710 7 8.18e-05 CACCAC CAGATGGC ACCATG chr12:5131793-5131813 9 8.18e-05 CTGCCCAG CAGATGGC GAGC chr1:11898894-11898914 8 8.18e-05 CTGCCAG CAGATGGC ACCAG chr10:104594866-10459488 1 8.18e-05 . CAGATGGC CACTAGATGG chr14:74829195-74829215 11 8.18e-05 ATATAGCCAG CAGATGGC AA chr15:89448143-89448163 5 1.01e-04 TCCA CTGATGGC CAGCAGGT chr4:1345808-1345828 13 1.38e-04 CCCGCGCCCT CTGGTGGT chr8:57154656-57154676 8 1.38e-04 CTGCTAT CTGGTGGT ATACT chr8:6698322-6698342 13 2.06e-04 AAACACCCAG TAGGTGGC chr10:97134549-97134569 12 2.06e-04 cactggtcac taggtggc g chr10:96892858-96892878 7 2.06e-04 tcccac taggtggc gctgtt chr19:49804699-49804719 8 2.06e-04 GCGCCCC CTAGTGGC CTGCT chr13:30082445-30082465 8 2.06e-04 TAGCCAC TAGGTGGC AGTGT chr22:46938367-46938387 11 2.06e-04 GCACTGGCCC CTAGTGGC CA chr7:18705938-18705958 4 2.06e-04 CCT CTAGTGGC AACAGCACT chr17:36571128-36571148 10 2.06e-04 TCCTGCCAC CTAGTGGC TCC chr10:71275557-71275577 13 2.06e-04 ATGTGGTCGC TAGGTGGC chr17:17259543-17259563 2 2.80e-04 A CAAATGGC CACTGGATGA chr6:37659965-37659985 2 3.35e-04 C CTGCTGGC CACATCTGGA chr3:50653526-50653546 1 3.35e-04 . TAGATGGC CTGTAGATGA chr6:35209055-35209075 3 3.35e-04 CT CTGCTGGC CAAAGATGAC chr13:100308544-10030856 10 3.35e-04 GCAGACCAC TAGATGGC ACT chr14:55240900-55240920 11 3.35e-04 gcgctgcccc ctgctggc tg chr2:136555233-136555253 6 3.35e-04 GCCAC CTGCTGGC CAAGTGA chr20:37676870-37676890 8 3.35e-04 CTGCCCT CTGCTGGC CACAT chr14:105837315-10583733 9 3.35e-04 ACTGCCTG TAGATGGC GCTG chr6:44064623-44064643 8 3.35e-04 TGCCCAC TAGATGGC ACAAT chr11:78356433-78356453 9 3.35e-04 TTGGCCGG TAGATGGC AGCT chr17:34985903-34985923 8 3.35e-04 TTCACAC TAGATGGC GCTCT chr2:60901873-60901893 8 3.35e-04 CTGCCCT CTGCTGGC CACGT chr17:26207225-26207245 5 3.99e-04 GCCT CTAGTGGT CATGGGGA chr13:77477874-77477894 4 3.99e-04 CAC CTAGTGGT GAAACGCAG chr7:105683416-105683436 11 3.99e-04 ACAGCGACAC CTAGTGGT CT chr13:96130946-96130966 6 3.99e-04 TCCCC CTAGTGGT GACTTGC chr1:11702655-11702675 10 3.99e-04 TGCTGACAC CTAGTGGT ACT chr1:110648919-110648939 9 3.99e-04 AGTGACAT CTAGTGGT CACA chr15:75242904-75242924 1 3.99e-04 . CTAGTGGT CAGTGTGGGC chr19:42104110-42104130 1 3.99e-04 . ctagtggt cagtcctggg chr2:73089830-73089850 7 3.99e-04 CGCCAC CTAGTGGT GTCTTG chr17:43717902-43717922 10 3.99e-04 CATTGCCAC TAGGTGGT GCT chr1:26743693-26743713 13 4.46e-04 GCAGCGCCAT CTGGTGGA chr2:85906482-85906502 11 4.46e-04 GCAGGACCGG AAGGTGGC GC chr19:17966555-17966575 10 4.46e-04 TGCTGCCAC CTGGTGGA CAC chr12:57576924-57576944 9 5.02e-04 GCCCTCTC ATGGTGGC TAGG chr9:134631158-134631178 13 5.02e-04 TTGCTGTCAC ATGGTGGC chrX:104167005-104167025 11 5.02e-04 gtacagtgct cagctggt tc chr1:155959345-155959365 8 5.57e-04 GTGGCCC CTGCTGGT CAAAG chr22:45831739-45831759 1 5.57e-04 . CTGCTGGT GACCAGCAGC chr1:91630996-91631016 8 5.57e-04 GCGCCAC CTGCTGGT AGGCT chr22:37853533-37853553 13 5.57e-04 TGAGTGCCCC CTGCTGGT chr5:153990072-153990092 9 5.57e-04 AGCGTCAC CTGCTGGT CCAG chr16:2551369-2551389 6 5.57e-04 GCCCC CTGCTGGT GCCGCAT chr15:68966520-68966540 1 5.57e-04 . CTGCTGGT GGAATGCTGG chr17:7259500-7259520 12 6.58e-04 CTGTCTCCTG CAGGGGGC A chr1:43994964-43994984 6 6.58e-04 TACGC CAGGGGGC GCACACG chr5:175156972-175156992 10 6.58e-04 GGAATCCAC CAGGGGGC AGT chr2:219894568-219894588 13 6.58e-04 ACAGGGCCAC CAGGGGGC chr7:30978544-30978564 6 6.58e-04 ACCAC CAGGGGGC ACCAGTA chr1:110319630-110319650 7 6.58e-04 GGCCAG CAGGGGGC AGAACA chr1:16947696-16947716 2 6.58e-04 c ctgatgga gaagcgtgat chr17:34476518-34476538 4 7.66e-04 CAT CTACTGGC AATCACTGT chr17:66432710-66432730 7 7.66e-04 TGCCAC CTACTGGC AAGGGG chr19:42800372-42800392 6 8.11e-04 GCCCC CATGTGGC CTGGGCC chr1:43693099-43693119 13 8.73e-04 ATTTGGCCAC CAGAGGGC chr2:9939969-9939989 12 8.73e-04 ATCTTGCCAC CAGAGGGC A chr5:176087965-176087985 13 8.73e-04 CAGTTACCAC CAGAGGGC chr17:34074665-34074685 13 8.73e-04 TGCCCGCCAT CTTGTGGC chr1:27627453-27627473 12 8.73e-04 CTGTGCCCAG CAGAGGGC A chr7:73831888-73831908 10 9.52e-04 ATTTACCAG CAGGTGTC ACC chr16:2977220-2977240 13 1.02e-03 acagcaccac ctagtgga chr8:74086735-74086755 1 1.02e-03 . CTAGTGGA CACAGCGCGC chr11:122667015-12266703 8 1.11e-03 CATACCC ATAGTGGC CTCTA chr19:34269082-34269102 3 1.37e-03 GC CAGGTGGG GCTAAGTCCC chr19:41104661-41104681 5 1.37e-03 TGTG AAAATGGC GCCACCTG chr1:11954174-11954194 6 1.37e-03 GCCAC CTGCTGGA GATGCAG chr13:113597192-11359721 13 1.58e-03 CACATGCCAG CAGAGGGT chr11:44308020-44308040 9 1.58e-03 AGTTGTGC ATGCTGGC CACC chr6:36727117-36727137 9 1.58e-03 AGCGCCAC CTAGGGGC CAGC chr3:25938703-25938723 12 1.58e-03 GCGACATCTA GAGGTGGC A chr9:124885428-124885448 2 1.58e-03 C CTTGTGGT CAGAGGAGGG chr1:45118714-45118734 3 1.70e-03 AC CTGTTGGC CATGGCTAGG chr8:38268326-38268346 8 1.70e-03 CCACCCA GTGGTGGC GAATA chr18:46201785-46201805 3 2.00e-03 AC TAGAGGGC ACCAGCGCAC chr3:197633014-197633034 13 2.00e-03 gctgtgtcag tagagggc chr11:17620673-17620693 6 2.00e-03 ACCAC TAGAGGGC AAGCTGA chr9:34899728-34899748 13 2.00e-03 CCAGAGACAC TAGAGGGC chr12:125667864-12566788 12 2.00e-03 TTTCAGCCAC GAGATGGC A chr11:72296903-72296923 8 2.00e-03 TGAACAC TAGAGGGC GATCA chr1:16951567-16951587 9 2.00e-03 CAGGCCTC AAGGTGGA GACT chr2:241790800-241790820 6 2.11e-03 GCCGC TAGGTGTC ACTGTTT chr12:3182742-3182762 13 2.11e-03 CTTTCGCCAC TAGGTGTC chr1:168051665-168051685 8 2.11e-03 CTGCCAC CTAGTGTC TAAGG chr19:33897918-33897938 4 2.19e-03 CCT CTTCTGGC CAGTTCTGG chr12:29470903-29470923 8 2.36e-03 GCTAAGG CAGCTGTC ACCAC chr2:86041503-86041523 9 2.57e-03 AGCGCCCT CTGCTGTC CAGG chr2:110267875-110267895 13 2.57e-03 GGAGCTCCCT CTGTTGGT chr10:79807212-79807232 9 2.57e-03 ACTCCCAC AAGGGGGC ACTG chr15:42281878-42281898 13 2.78e-03 CAAAGGACAC ATGGGGGC chr1:9927710-9927730 6 2.78e-03 GCCAC CTAGTGGG CAGGAGG chr9:139118129-139118149 7 2.78e-03 CGCCCC CTAGTGGG AGCAAT chr1:55743389-55743409 6 2.98e-03 GCCCT CTTGTGGA CATGCGC chr15:45145717-45145737 9 2.98e-03 CCAGACAC TAGAGGGT GCTG chr14:69378481-69378501 12 2.98e-03 AAATGGCCAC TAGAGGGT G chr7:105817281-105817301 8 3.17e-03 AGTGTGG CAAATGGG CACAG chr16:11012782-11012802 8 3.42e-03 CTGCCAC CTTCTGGT AGGCC chr7:35577208-35577228 11 3.61e-03 GCGCCACCTA GTGCTGGC AG chr1:212185474-212185494 7 4.13e-03 ttgcca ctagggga cactgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGTGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:99332175-99332195 3.1e-05 3_[+1]_9 chr2:7237555-7237575 3.1e-05 6_[+1]_6 chr9:101610996-101611016 3.1e-05 12_[+1] chr6:29815987-29816007 3.1e-05 7_[+1]_5 chr22:45974051-45974071 3.1e-05 11_[+1]_1 chr10:30681603-30681623 3.1e-05 2_[+1]_10 chr17:40115159-40115179 3.1e-05 10_[+1]_2 chr1:15757809-15757829 3.1e-05 4_[+1]_8 chr2:43056152-43056172 3.1e-05 11_[+1]_1 chr7:31023383-31023403 3.1e-05 5_[+1]_7 chr1:110596622-110596642 3.1e-05 8_[+1]_4 chr22:46763689-46763709 3.1e-05 12_[+1] chr7:30780239-30780259 6.3e-05 7_[+1]_5 chr12:118275222-11827524 6.3e-05 1_[+1]_11 chr1:32059768-32059788 6.3e-05 5_[+1]_7 chr1:46993872-46993892 6.3e-05 7_[+1]_5 chr3:51703465-51703485 6.3e-05 2_[+1]_10 chr11:117297094-11729711 8.2e-05 7_[+1]_5 chr5:133520029-133520049 8.2e-05 9_[+1]_3 chr22:20144690-20144710 8.2e-05 6_[+1]_6 chr12:5131793-5131813 8.2e-05 8_[+1]_4 chr1:11898894-11898914 8.2e-05 7_[+1]_5 chr10:104594866-10459488 8.2e-05 [+1]_12 chr14:74829195-74829215 8.2e-05 10_[+1]_2 chr15:89448143-89448163 0.0001 4_[+1]_8 chr4:1345808-1345828 0.00014 12_[+1] chr8:57154656-57154676 0.00014 7_[+1]_5 chr8:6698322-6698342 0.00021 12_[+1] chr10:97134549-97134569 0.00021 11_[+1]_1 chr10:96892858-96892878 0.00021 6_[+1]_6 chr19:49804699-49804719 0.00021 7_[+1]_5 chr13:30082445-30082465 0.00021 7_[+1]_5 chr22:46938367-46938387 0.00021 10_[+1]_2 chr7:18705938-18705958 0.00021 3_[+1]_9 chr17:36571128-36571148 0.00021 9_[+1]_3 chr10:71275557-71275577 0.00021 12_[+1] chr17:17259543-17259563 0.00028 1_[+1]_11 chr6:37659965-37659985 0.00034 1_[+1]_11 chr3:50653526-50653546 0.00034 [+1]_12 chr6:35209055-35209075 0.00034 2_[+1]_10 chr13:100308544-10030856 0.00034 9_[+1]_3 chr14:55240900-55240920 0.00034 10_[+1]_2 chr2:136555233-136555253 0.00034 5_[+1]_7 chr20:37676870-37676890 0.00034 7_[+1]_5 chr14:105837315-10583733 0.00034 8_[+1]_4 chr6:44064623-44064643 0.00034 7_[+1]_5 chr11:78356433-78356453 0.00034 8_[+1]_4 chr17:34985903-34985923 0.00034 7_[+1]_5 chr2:60901873-60901893 0.00034 7_[+1]_5 chr17:26207225-26207245 0.0004 4_[+1]_8 chr13:77477874-77477894 0.0004 3_[+1]_9 chr7:105683416-105683436 0.0004 10_[+1]_2 chr13:96130946-96130966 0.0004 5_[+1]_7 chr1:11702655-11702675 0.0004 9_[+1]_3 chr1:110648919-110648939 0.0004 8_[+1]_4 chr15:75242904-75242924 0.0004 [+1]_12 chr19:42104110-42104130 0.0004 [+1]_12 chr2:73089830-73089850 0.0004 6_[+1]_6 chr17:43717902-43717922 0.0004 9_[+1]_3 chr1:26743693-26743713 0.00045 12_[+1] chr2:85906482-85906502 0.00045 10_[+1]_2 chr19:17966555-17966575 0.00045 9_[+1]_3 chr12:57576924-57576944 0.0005 8_[+1]_4 chr9:134631158-134631178 0.0005 12_[+1] chrX:104167005-104167025 0.0005 10_[+1]_2 chr1:155959345-155959365 0.00056 7_[+1]_5 chr22:45831739-45831759 0.00056 [+1]_12 chr1:91630996-91631016 0.00056 7_[+1]_5 chr22:37853533-37853553 0.00056 12_[+1] chr5:153990072-153990092 0.00056 8_[+1]_4 chr16:2551369-2551389 0.00056 5_[+1]_7 chr15:68966520-68966540 0.00056 [+1]_12 chr17:7259500-7259520 0.00066 11_[+1]_1 chr1:43994964-43994984 0.00066 5_[+1]_7 chr5:175156972-175156992 0.00066 9_[+1]_3 chr2:219894568-219894588 0.00066 12_[+1] chr7:30978544-30978564 0.00066 5_[+1]_7 chr1:110319630-110319650 0.00066 6_[+1]_6 chr1:16947696-16947716 0.00066 1_[+1]_11 chr17:34476518-34476538 0.00077 3_[+1]_9 chr17:66432710-66432730 0.00077 6_[+1]_6 chr19:42800372-42800392 0.00081 5_[+1]_7 chr1:43693099-43693119 0.00087 12_[+1] chr2:9939969-9939989 0.00087 11_[+1]_1 chr5:176087965-176087985 0.00087 12_[+1] chr17:34074665-34074685 0.00087 12_[+1] chr1:27627453-27627473 0.00087 11_[+1]_1 chr7:73831888-73831908 0.00095 9_[+1]_3 chr16:2977220-2977240 0.001 12_[+1] chr8:74086735-74086755 0.001 [+1]_12 chr11:122667015-12266703 0.0011 7_[+1]_5 chr19:34269082-34269102 0.0014 2_[+1]_10 chr19:41104661-41104681 0.0014 4_[+1]_8 chr1:11954174-11954194 0.0014 5_[+1]_7 chr13:113597192-11359721 0.0016 12_[+1] chr11:44308020-44308040 0.0016 8_[+1]_4 chr6:36727117-36727137 0.0016 8_[+1]_4 chr3:25938703-25938723 0.0016 11_[+1]_1 chr9:124885428-124885448 0.0016 1_[+1]_11 chr1:45118714-45118734 0.0017 2_[+1]_10 chr8:38268326-38268346 0.0017 7_[+1]_5 chr18:46201785-46201805 0.002 2_[+1]_10 chr3:197633014-197633034 0.002 12_[+1] chr11:17620673-17620693 0.002 5_[+1]_7 chr9:34899728-34899748 0.002 12_[+1] chr12:125667864-12566788 0.002 11_[+1]_1 chr11:72296903-72296923 0.002 7_[+1]_5 chr1:16951567-16951587 0.002 8_[+1]_4 chr2:241790800-241790820 0.0021 5_[+1]_7 chr12:3182742-3182762 0.0021 12_[+1] chr1:168051665-168051685 0.0021 7_[+1]_5 chr19:33897918-33897938 0.0022 3_[+1]_9 chr12:29470903-29470923 0.0024 7_[+1]_5 chr2:86041503-86041523 0.0026 8_[+1]_4 chr2:110267875-110267895 0.0026 12_[+1] chr10:79807212-79807232 0.0026 8_[+1]_4 chr15:42281878-42281898 0.0028 12_[+1] chr1:9927710-9927730 0.0028 5_[+1]_7 chr9:139118129-139118149 0.0028 6_[+1]_6 chr1:55743389-55743409 0.003 5_[+1]_7 chr15:45145717-45145737 0.003 8_[+1]_4 chr14:69378481-69378501 0.003 11_[+1]_1 chr7:105817281-105817301 0.0032 7_[+1]_5 chr16:11012782-11012802 0.0034 7_[+1]_5 chr7:35577208-35577228 0.0036 10_[+1]_2 chr1:212185474-212185494 0.0041 6_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGTGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGGTGGC width=8 seqs=126 chr10:99332175-99332195 ( 4) CAGGTGGC 1 chr2:7237555-7237575 ( 7) CAGGTGGC 1 chr9:101610996-101611016 ( 13) CAGGTGGC 1 chr6:29815987-29816007 ( 8) CAGGTGGC 1 chr22:45974051-45974071 ( 12) CAGGTGGC 1 chr10:30681603-30681623 ( 3) CAGGTGGC 1 chr17:40115159-40115179 ( 11) CAGGTGGC 1 chr1:15757809-15757829 ( 5) CAGGTGGC 1 chr2:43056152-43056172 ( 12) CAGGTGGC 1 chr7:31023383-31023403 ( 6) CAGGTGGC 1 chr1:110596622-110596642 ( 9) CAGGTGGC 1 chr22:46763689-46763709 ( 13) CAGGTGGC 1 chr7:30780239-30780259 ( 8) CTGGTGGC 1 chr12:118275222-11827524 ( 2) CTGGTGGC 1 chr1:32059768-32059788 ( 6) CTGGTGGC 1 chr1:46993872-46993892 ( 8) CTGGTGGC 1 chr3:51703465-51703485 ( 3) CTGGTGGC 1 chr11:117297094-11729711 ( 8) CAGATGGC 1 chr5:133520029-133520049 ( 10) CAGATGGC 1 chr22:20144690-20144710 ( 7) CAGATGGC 1 chr12:5131793-5131813 ( 9) CAGATGGC 1 chr1:11898894-11898914 ( 8) CAGATGGC 1 chr10:104594866-10459488 ( 1) CAGATGGC 1 chr14:74829195-74829215 ( 11) CAGATGGC 1 chr15:89448143-89448163 ( 5) CTGATGGC 1 chr4:1345808-1345828 ( 13) CTGGTGGT 1 chr8:57154656-57154676 ( 8) CTGGTGGT 1 chr8:6698322-6698342 ( 13) TAGGTGGC 1 chr10:97134549-97134569 ( 12) TAGGTGGC 1 chr10:96892858-96892878 ( 7) TAGGTGGC 1 chr19:49804699-49804719 ( 8) CTAGTGGC 1 chr13:30082445-30082465 ( 8) TAGGTGGC 1 chr22:46938367-46938387 ( 11) CTAGTGGC 1 chr7:18705938-18705958 ( 4) CTAGTGGC 1 chr17:36571128-36571148 ( 10) CTAGTGGC 1 chr10:71275557-71275577 ( 13) TAGGTGGC 1 chr17:17259543-17259563 ( 2) CAAATGGC 1 chr6:37659965-37659985 ( 2) CTGCTGGC 1 chr3:50653526-50653546 ( 1) TAGATGGC 1 chr6:35209055-35209075 ( 3) CTGCTGGC 1 chr13:100308544-10030856 ( 10) TAGATGGC 1 chr14:55240900-55240920 ( 11) CTGCTGGC 1 chr2:136555233-136555253 ( 6) CTGCTGGC 1 chr20:37676870-37676890 ( 8) CTGCTGGC 1 chr14:105837315-10583733 ( 9) TAGATGGC 1 chr6:44064623-44064643 ( 8) TAGATGGC 1 chr11:78356433-78356453 ( 9) TAGATGGC 1 chr17:34985903-34985923 ( 8) TAGATGGC 1 chr2:60901873-60901893 ( 8) CTGCTGGC 1 chr17:26207225-26207245 ( 5) CTAGTGGT 1 chr13:77477874-77477894 ( 4) CTAGTGGT 1 chr7:105683416-105683436 ( 11) CTAGTGGT 1 chr13:96130946-96130966 ( 6) CTAGTGGT 1 chr1:11702655-11702675 ( 10) CTAGTGGT 1 chr1:110648919-110648939 ( 9) CTAGTGGT 1 chr15:75242904-75242924 ( 1) CTAGTGGT 1 chr19:42104110-42104130 ( 1) CTAGTGGT 1 chr2:73089830-73089850 ( 7) CTAGTGGT 1 chr17:43717902-43717922 ( 10) TAGGTGGT 1 chr1:26743693-26743713 ( 13) CTGGTGGA 1 chr2:85906482-85906502 ( 11) AAGGTGGC 1 chr19:17966555-17966575 ( 10) CTGGTGGA 1 chr12:57576924-57576944 ( 9) ATGGTGGC 1 chr9:134631158-134631178 ( 13) ATGGTGGC 1 chrX:104167005-104167025 ( 11) CAGCTGGT 1 chr1:155959345-155959365 ( 8) CTGCTGGT 1 chr22:45831739-45831759 ( 1) CTGCTGGT 1 chr1:91630996-91631016 ( 8) CTGCTGGT 1 chr22:37853533-37853553 ( 13) CTGCTGGT 1 chr5:153990072-153990092 ( 9) CTGCTGGT 1 chr16:2551369-2551389 ( 6) CTGCTGGT 1 chr15:68966520-68966540 ( 1) CTGCTGGT 1 chr17:7259500-7259520 ( 12) CAGGGGGC 1 chr1:43994964-43994984 ( 6) CAGGGGGC 1 chr5:175156972-175156992 ( 10) CAGGGGGC 1 chr2:219894568-219894588 ( 13) CAGGGGGC 1 chr7:30978544-30978564 ( 6) CAGGGGGC 1 chr1:110319630-110319650 ( 7) CAGGGGGC 1 chr1:16947696-16947716 ( 2) CTGATGGA 1 chr17:34476518-34476538 ( 4) CTACTGGC 1 chr17:66432710-66432730 ( 7) CTACTGGC 1 chr19:42800372-42800392 ( 6) CATGTGGC 1 chr1:43693099-43693119 ( 13) CAGAGGGC 1 chr2:9939969-9939989 ( 12) CAGAGGGC 1 chr5:176087965-176087985 ( 13) CAGAGGGC 1 chr17:34074665-34074685 ( 13) CTTGTGGC 1 chr1:27627453-27627473 ( 12) CAGAGGGC 1 chr7:73831888-73831908 ( 10) CAGGTGTC 1 chr16:2977220-2977240 ( 13) CTAGTGGA 1 chr8:74086735-74086755 ( 1) CTAGTGGA 1 chr11:122667015-12266703 ( 8) ATAGTGGC 1 chr19:34269082-34269102 ( 3) CAGGTGGG 1 chr19:41104661-41104681 ( 5) AAAATGGC 1 chr1:11954174-11954194 ( 6) CTGCTGGA 1 chr13:113597192-11359721 ( 13) CAGAGGGT 1 chr11:44308020-44308040 ( 9) ATGCTGGC 1 chr6:36727117-36727137 ( 9) CTAGGGGC 1 chr3:25938703-25938723 ( 12) GAGGTGGC 1 chr9:124885428-124885448 ( 2) CTTGTGGT 1 chr1:45118714-45118734 ( 3) CTGTTGGC 1 chr8:38268326-38268346 ( 8) GTGGTGGC 1 chr18:46201785-46201805 ( 3) TAGAGGGC 1 chr3:197633014-197633034 ( 13) TAGAGGGC 1 chr11:17620673-17620693 ( 6) TAGAGGGC 1 chr9:34899728-34899748 ( 13) TAGAGGGC 1 chr12:125667864-12566788 ( 12) GAGATGGC 1 chr11:72296903-72296923 ( 8) TAGAGGGC 1 chr1:16951567-16951587 ( 9) AAGGTGGA 1 chr2:241790800-241790820 ( 6) TAGGTGTC 1 chr12:3182742-3182762 ( 13) TAGGTGTC 1 chr1:168051665-168051685 ( 8) CTAGTGTC 1 chr19:33897918-33897938 ( 4) CTTCTGGC 1 chr12:29470903-29470923 ( 8) CAGCTGTC 1 chr2:86041503-86041523 ( 9) CTGCTGTC 1 chr2:110267875-110267895 ( 13) CTGTTGGT 1 chr10:79807212-79807232 ( 9) AAGGGGGC 1 chr15:42281878-42281898 ( 13) ATGGGGGC 1 chr1:9927710-9927730 ( 6) CTAGTGGG 1 chr9:139118129-139118149 ( 7) CTAGTGGG 1 chr1:55743389-55743409 ( 6) CTTGTGGA 1 chr15:45145717-45145737 ( 9) TAGAGGGT 1 chr14:69378481-69378501 ( 12) TAGAGGGT 1 chr7:105817281-105817301 ( 8) CAAATGGG 1 chr16:11012782-11012802 ( 8) CTTCTGGT 1 chr7:35577208-35577228 ( 11) GTGCTGGC 1 chr1:212185474-212185494 ( 7) CTAGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGTGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.67028 E= 6.3e-093 -139 119 -327 -17 144 -1362 -1362 140 14 -1362 128 -197 39 -81 86 -356 -1362 -1362 -81 214 -1362 -1362 171 -1362 -1362 -1362 164 -197 -139 111 -327 14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGTGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 6.3e-093 0.071429 0.730159 0.031746 0.166667 0.507937 0.000000 0.000000 0.492063 0.206349 0.000000 0.746032 0.047619 0.246032 0.182540 0.555556 0.015873 0.000000 0.000000 0.174603 0.825397 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.952381 0.047619 0.071429 0.690476 0.031746 0.206349 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGTGGC MEME-1 regular expression -------------------------------------------------------------------------------- C[AT][GA][GA]TGG[CT] -------------------------------------------------------------------------------- Time 5.26 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCCMYCT MEME-2 width = 8 sites = 26 llr = 200 E-value = 2.1e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1:5::2 pos.-specific C 4:9a55a: probability G :a:::::: matrix T 6::::4:8 bits 2.4 2.2 1.9 1.7 * * ** Relative 1.5 * * ** Entropy 1.2 **** ** (11.1 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCCACCT consensus C CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:97466890-97466910 9 3.30e-05 GGTCACGC TGCCACCT GCTG chr15:63385955-63385975 8 3.30e-05 ACACTGC TGCCACCT GCTGT chr7:73140234-73140254 4 3.30e-05 TGC TGCCACCT TCTGGGCAG chr14:105175140-10517516 7 5.38e-05 CAGCAG TGCCCTCT GCAGGC chr9:115555681-115555701 8 5.38e-05 GGCGGGG TGCCCTCT GCTGG chr15:74615094-74615114 6 5.38e-05 GCGGC TGCCCTCT GCTGACT chr10:11800094-11800114 4 5.38e-05 TAG TGCCCTCT CCTGGCCGC chr2:85512758-85512778 8 5.38e-05 GCGCGGG TGCCCTCT AGTGG chr10:104238881-10423890 1 5.38e-05 . TGCCCTCT AGAGGATGGA chr9:95397162-95397182 6 5.38e-05 AACAC TGCCCTCT GCAGGCT chr13:20737700-20737720 5 8.91e-05 GGGG TGCCCCCT GGCAGGCA chr7:35577208-35577228 2 1.45e-04 G CGCCACCT AGTGCTGGCA chr1:211828716-211828736 10 1.45e-04 GAGCCATGG CGCCACCT TGC chr18:8988442-8988462 4 1.45e-04 TAT CGCCACCT AGCCACCTT chr7:131198456-131198476 10 1.45e-04 GGGCCGCAG CGCCACCT AGT chr3:192162482-192162502 1 1.45e-04 . CGCCACCT CGTGGACATG chr11:7687141-7687161 9 1.81e-04 TAGGGTAG CGCCCTCT GCCG chr11:20132600-20132620 6 1.81e-04 GATAT CGCCCTCT AGTGAGC chr19:12958562-12958582 9 2.53e-04 TCCCCGCG CGCCCCCT GGCG chr12:103969219-10396923 3 2.82e-04 CT TGCCACCA CACGAGGTCA chr3:137787595-137787615 3 2.82e-04 AC TGCCACCA GAGGTCGCCG chr11:92967952-92967972 3 3.02e-04 AC TGCCCTCA GAGTGGCAGT chr16:68362700-68362720 6 3.15e-04 GGTAC TGACACCT ACTGCTC chr9:93677347-93677367 8 4.37e-04 TCTCAAG TGCCCACT AGATG chr3:25938703-25938723 3 4.50e-04 AG CGACATCT AGAGGTGGCA chr2:120399314-120399334 8 4.85e-04 ACTCCAT CGCCACCA GATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:97466890-97466910 3.3e-05 8_[+2]_4 chr15:63385955-63385975 3.3e-05 7_[+2]_5 chr7:73140234-73140254 3.3e-05 3_[+2]_9 chr14:105175140-10517516 5.4e-05 6_[+2]_6 chr9:115555681-115555701 5.4e-05 7_[+2]_5 chr15:74615094-74615114 5.4e-05 5_[+2]_7 chr10:11800094-11800114 5.4e-05 3_[+2]_9 chr2:85512758-85512778 5.4e-05 7_[+2]_5 chr10:104238881-10423890 5.4e-05 [+2]_12 chr9:95397162-95397182 5.4e-05 5_[+2]_7 chr13:20737700-20737720 8.9e-05 4_[+2]_8 chr7:35577208-35577228 0.00015 1_[+2]_11 chr1:211828716-211828736 0.00015 9_[+2]_3 chr18:8988442-8988462 0.00015 3_[+2]_9 chr7:131198456-131198476 0.00015 9_[+2]_3 chr3:192162482-192162502 0.00015 [+2]_12 chr11:7687141-7687161 0.00018 8_[+2]_4 chr11:20132600-20132620 0.00018 5_[+2]_7 chr19:12958562-12958582 0.00025 8_[+2]_4 chr12:103969219-10396923 0.00028 2_[+2]_10 chr3:137787595-137787615 0.00028 2_[+2]_10 chr11:92967952-92967972 0.0003 2_[+2]_10 chr16:68362700-68362720 0.00031 5_[+2]_7 chr9:93677347-93677367 0.00044 7_[+2]_5 chr3:25938703-25938723 0.00045 2_[+2]_10 chr2:120399314-120399334 0.00049 7_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCCMYCT width=8 seqs=26 chr2:97466890-97466910 ( 9) TGCCACCT 1 chr15:63385955-63385975 ( 8) TGCCACCT 1 chr7:73140234-73140254 ( 4) TGCCACCT 1 chr14:105175140-10517516 ( 7) TGCCCTCT 1 chr9:115555681-115555701 ( 8) TGCCCTCT 1 chr15:74615094-74615114 ( 6) TGCCCTCT 1 chr10:11800094-11800114 ( 4) TGCCCTCT 1 chr2:85512758-85512778 ( 8) TGCCCTCT 1 chr10:104238881-10423890 ( 1) TGCCCTCT 1 chr9:95397162-95397182 ( 6) TGCCCTCT 1 chr13:20737700-20737720 ( 5) TGCCCCCT 1 chr7:35577208-35577228 ( 2) CGCCACCT 1 chr1:211828716-211828736 ( 10) CGCCACCT 1 chr18:8988442-8988462 ( 4) CGCCACCT 1 chr7:131198456-131198476 ( 10) CGCCACCT 1 chr3:192162482-192162502 ( 1) CGCCACCT 1 chr11:7687141-7687161 ( 9) CGCCCTCT 1 chr11:20132600-20132620 ( 6) CGCCCTCT 1 chr19:12958562-12958582 ( 9) CGCCCCCT 1 chr12:103969219-10396923 ( 3) TGCCACCA 1 chr3:137787595-137787615 ( 3) TGCCACCA 1 chr11:92967952-92967972 ( 3) TGCCCTCA 1 chr16:68362700-68362720 ( 6) TGACACCT 1 chr9:93677347-93677367 ( 8) TGCCCACT 1 chr3:25938703-25938723 ( 3) CGACATCT 1 chr2:120399314-120399334 ( 8) CGCCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.12501 E= 2.1e-007 -1134 27 -1134 172 -1134 -1134 171 -1134 -129 153 -1134 -1134 -1134 165 -1134 -1134 141 65 -1134 -1134 -228 75 -1134 118 -1134 165 -1134 -1134 -29 -1134 -1134 218 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.1e-007 0.000000 0.384615 0.000000 0.615385 0.000000 0.000000 1.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.038462 0.538462 0.000000 0.423077 0.000000 1.000000 0.000000 0.000000 0.153846 0.000000 0.000000 0.846154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCMYCT MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GCC[AC][CT]CT -------------------------------------------------------------------------------- Time 8.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TBTGGCCA MEME-3 width = 8 sites = 28 llr = 203 E-value = 1.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TBTGGCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::a pos.-specific C 13:117a: probability G :5:862:: matrix T 93a131:: bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * ** Relative 1.5 * * ** Entropy 1.2 * * ** (10.4 bits) 1.0 * ** ** 0.7 * ** ** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel TGTGGCCA consensus C TG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTGGCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:23587379-23587399 5 1.92e-05 CTCC TGTGGCCA CAGCCGGC chr1:43693099-43693119 4 3.09e-05 GCA TTTGGCCA CCAGAGGGC chr8:102339352-102339372 5 3.09e-05 ATGT TTTGGCCA GCAGGTGG chr1:159906364-159906384 7 3.09e-05 TCCGAG TTTGGCCA GCAGAG chr17:48860677-48860697 11 4.26e-05 CCATTCTCCG TGTGTCCA CC chr17:18120889-18120909 3 4.26e-05 CC TGTGTCCA CAGTGTGGCA chr12:54973660-54973680 6 4.98e-05 CCCCT TTTGTCCA GCAGATG chr3:17882898-17882918 13 8.19e-05 GCTGCCCCCG TCTGTCCA chr7:131374052-131374072 5 8.19e-05 GGGA TCTGTCCA CCAGAGGG chr15:75242904-75242924 12 1.00e-04 TAGTGGTCAG TGTGGGCA T chr7:127849998-127850018 13 1.42e-04 GGTGGCATCG TGTGGTCA chr12:54095731-54095751 4 1.60e-04 TGG TGTGTGCA GCCAGCAGG chr3:14675497-14675517 10 1.85e-04 CATTGCACT TGTTGCCA CAC chr11:73006658-73006678 3 2.16e-04 AC TCTGGGCA CTAGGAGGCG chr7:73140234-73140254 12 2.16e-04 GCTGCCACCT TCTGGGCA G chr5:133520029-133520049 1 2.28e-04 . TCTGACCA ACAGATGGCA chr22:37713052-37713072 7 2.47e-04 CCTCAC TCTGGTCA GCAGGG chr9:129263321-129263341 3 3.02e-04 CA TGTGCCCA GGCGGCCACC chr2:9939969-9939989 3 3.02e-04 GA TCTTGCCA CCAGAGGGCA chr1:27627453-27627473 3 3.02e-04 TC TGTGCCCA GCAGAGGGCA chr16:67011732-67011752 5 3.26e-04 GGAG TGTGAGCA CCAGGGGG chr15:74927664-74927684 3 3.71e-04 CC TGTCGCCA CTGGGTGGCA chr12:3182742-3182762 4 3.95e-04 CAC TTTCGCCA CTAGGTGTC chr3:116489852-116489872 8 4.95e-04 GCCCTTC TTTTTGCA CATAC chr7:150821185-150821205 5 4.95e-04 ACCT TCTGATCA CCACCGGA chr11:131544031-13154405 10 5.53e-04 GCGCCCTCG CGTGGCCA TGA chr19:33634967-33634987 5 6.06e-04 tgct cttggcca cttggtgt chr5:139013036-139013056 7 6.45e-04 GCCTTG AGTGGCCA GCAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTGGCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:23587379-23587399 1.9e-05 4_[+3]_8 chr1:43693099-43693119 3.1e-05 3_[+3]_9 chr8:102339352-102339372 3.1e-05 4_[+3]_8 chr1:159906364-159906384 3.1e-05 6_[+3]_6 chr17:48860677-48860697 4.3e-05 10_[+3]_2 chr17:18120889-18120909 4.3e-05 2_[+3]_10 chr12:54973660-54973680 5e-05 5_[+3]_7 chr3:17882898-17882918 8.2e-05 12_[+3] chr7:131374052-131374072 8.2e-05 4_[+3]_8 chr15:75242904-75242924 0.0001 11_[+3]_1 chr7:127849998-127850018 0.00014 12_[+3] chr12:54095731-54095751 0.00016 3_[+3]_9 chr3:14675497-14675517 0.00019 9_[+3]_3 chr11:73006658-73006678 0.00022 2_[+3]_10 chr7:73140234-73140254 0.00022 11_[+3]_1 chr5:133520029-133520049 0.00023 [+3]_12 chr22:37713052-37713072 0.00025 6_[+3]_6 chr9:129263321-129263341 0.0003 2_[+3]_10 chr2:9939969-9939989 0.0003 2_[+3]_10 chr1:27627453-27627473 0.0003 2_[+3]_10 chr16:67011732-67011752 0.00033 4_[+3]_8 chr15:74927664-74927684 0.00037 2_[+3]_10 chr12:3182742-3182762 0.00039 3_[+3]_9 chr3:116489852-116489872 0.00049 7_[+3]_5 chr7:150821185-150821205 0.00049 4_[+3]_8 chr11:131544031-13154405 0.00055 9_[+3]_3 chr19:33634967-33634987 0.00061 4_[+3]_8 chr5:139013036-139013056 0.00064 6_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTGGCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TBTGGCCA width=8 seqs=28 chr20:23587379-23587399 ( 5) TGTGGCCA 1 chr1:43693099-43693119 ( 4) TTTGGCCA 1 chr8:102339352-102339372 ( 5) TTTGGCCA 1 chr1:159906364-159906384 ( 7) TTTGGCCA 1 chr17:48860677-48860697 ( 11) TGTGTCCA 1 chr17:18120889-18120909 ( 3) TGTGTCCA 1 chr12:54973660-54973680 ( 6) TTTGTCCA 1 chr3:17882898-17882918 ( 13) TCTGTCCA 1 chr7:131374052-131374072 ( 5) TCTGTCCA 1 chr15:75242904-75242924 ( 12) TGTGGGCA 1 chr7:127849998-127850018 ( 13) TGTGGTCA 1 chr12:54095731-54095751 ( 4) TGTGTGCA 1 chr3:14675497-14675517 ( 10) TGTTGCCA 1 chr11:73006658-73006678 ( 3) TCTGGGCA 1 chr7:73140234-73140254 ( 12) TCTGGGCA 1 chr5:133520029-133520049 ( 1) TCTGACCA 1 chr22:37713052-37713072 ( 7) TCTGGTCA 1 chr9:129263321-129263341 ( 3) TGTGCCCA 1 chr2:9939969-9939989 ( 3) TCTTGCCA 1 chr1:27627453-27627473 ( 3) TGTGCCCA 1 chr16:67011732-67011752 ( 5) TGTGAGCA 1 chr15:74927664-74927684 ( 3) TGTCGCCA 1 chr12:3182742-3182762 ( 4) TTTCGCCA 1 chr3:116489852-116489872 ( 8) TTTTTGCA 1 chr7:150821185-150821205 ( 5) TCTGATCA 1 chr11:131544031-13154405 ( 10) CGTGGCCA 1 chr19:33634967-33634987 ( 5) CTTGGCCA 1 chr5:139013036-139013056 ( 7) AGTGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTGGCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.07592 E= 1.4e-004 -239 -216 -1145 225 -1145 -16 60 42 -1145 -1145 -1145 242 -1145 -216 142 -80 -81 -216 90 42 -1145 109 -51 -80 -1145 165 -1145 -1145 241 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTGGCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.4e-004 0.035714 0.071429 0.000000 0.892857 0.000000 0.285714 0.464286 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.071429 0.821429 0.107143 0.107143 0.071429 0.571429 0.250000 0.000000 0.678571 0.214286 0.107143 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TBTGGCCA MEME-3 regular expression -------------------------------------------------------------------------------- T[GCT]TG[GT][CG]CA -------------------------------------------------------------------------------- Time 11.53 secs. ******************************************************************************** ******************************************************************************** MOTIF RCCACCAG MEME-4 width = 8 sites = 18 llr = 137 E-value = 7.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCCACCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 42:9:1a: pos.-specific C 28a:77:: probability G 4::13::a matrix T :::::2:: bits 2.4 * 2.2 * * 1.9 * * 1.7 ** ** Relative 1.5 ** ** Entropy 1.2 *** ** (10.9 bits) 1.0 *** ** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCACCAG consensus A GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:105556984-10555700 13 2.11e-05 GCACTGTCGC ACCACCAG chr3:134027381-134027401 12 5.53e-05 ACATGTTAGG GCCACCAG G chr11:61666755-61666775 12 5.53e-05 CCCTGCACCG GCCACCAG G chr11:74991365-74991385 10 5.53e-05 CACCCTATA GCCACCAG GTG chr7:123264806-123264826 1 6.77e-05 . ACCACTAG GCGTCGCTGC chr22:45831739-45831759 10 1.08e-04 CTGCTGGTG ACCAGCAG CAC chr9:35696724-35696744 10 1.08e-04 ACCTTCCTG GCCACTAG GGG chr10:86024511-86024531 9 1.66e-04 CAGCAGGT ACCACAAG GTGG chr12:54095731-54095751 12 1.66e-04 GGTGTGTGCA GCCAGCAG G chr11:4658290-4658310 10 1.66e-04 CCCTGTGCG ACCACAAG GTG chr3:70169703-70169723 7 1.66e-04 ACCTCT GCCAGCAG GAGGAG chr8:135698004-135698024 13 2.01e-04 CCTCCAGTGG CCCACCAG chr12:131589374-13158939 12 2.33e-04 CTTGCACGCG GACACCAG G chr16:57610449-57610469 13 2.61e-04 TCCCAGAACG AACACTAG chr1:17036443-17036463 10 3.25e-04 CCACCAAAG GACACTAG GTG chr22:29641686-29641706 7 3.71e-04 CTGTGG CCCAGCAG TGACAC chr22:46763689-46763709 4 3.71e-04 AGC CCCAGCAG CCAGGTGGC chr9:101737361-101737381 6 5.63e-04 TAGAG ACCGCCAG GAGCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:105556984-10555700 2.1e-05 12_[+4] chr3:134027381-134027401 5.5e-05 11_[+4]_1 chr11:61666755-61666775 5.5e-05 11_[+4]_1 chr11:74991365-74991385 5.5e-05 9_[+4]_3 chr7:123264806-123264826 6.8e-05 [+4]_12 chr22:45831739-45831759 0.00011 9_[+4]_3 chr9:35696724-35696744 0.00011 9_[+4]_3 chr10:86024511-86024531 0.00017 8_[+4]_4 chr12:54095731-54095751 0.00017 11_[+4]_1 chr11:4658290-4658310 0.00017 9_[+4]_3 chr3:70169703-70169723 0.00017 6_[+4]_6 chr8:135698004-135698024 0.0002 12_[+4] chr12:131589374-13158939 0.00023 11_[+4]_1 chr16:57610449-57610469 0.00026 12_[+4] chr1:17036443-17036463 0.00032 9_[+4]_3 chr22:29641686-29641706 0.00037 6_[+4]_6 chr22:46763689-46763709 0.00037 3_[+4]_9 chr9:101737361-101737381 0.00056 5_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCCACCAG width=8 seqs=18 chr14:105556984-10555700 ( 13) ACCACCAG 1 chr3:134027381-134027401 ( 12) GCCACCAG 1 chr11:61666755-61666775 ( 12) GCCACCAG 1 chr11:74991365-74991385 ( 10) GCCACCAG 1 chr7:123264806-123264826 ( 1) ACCACTAG 1 chr22:45831739-45831759 ( 10) ACCAGCAG 1 chr9:35696724-35696744 ( 10) GCCACTAG 1 chr10:86024511-86024531 ( 9) ACCACAAG 1 chr12:54095731-54095751 ( 12) GCCAGCAG 1 chr11:4658290-4658310 ( 10) ACCACAAG 1 chr3:70169703-70169723 ( 7) GCCAGCAG 1 chr8:135698004-135698024 ( 13) CCCACCAG 1 chr12:131589374-13158939 ( 12) GACACCAG 1 chr16:57610449-57610469 ( 13) AACACTAG 1 chr1:17036443-17036463 ( 10) GACACTAG 1 chr22:29641686-29641706 ( 7) CCCAGCAG 1 chr22:46763689-46763709 ( 4) CCCAGCAG 1 chr9:101737361-101737381 ( 6) ACCGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.6233 E= 7.8e+002 105 -94 54 -1081 -17 138 -1081 -1081 -1081 165 -1081 -1081 233 -1081 -246 -1081 -1081 118 -14 -1081 -76 106 -1081 25 241 -1081 -1081 -1081 -1081 -1081 171 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 7.8e+002 0.388889 0.166667 0.444444 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.000000 0.722222 0.277778 0.000000 0.111111 0.666667 0.000000 0.222222 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACCAG MEME-4 regular expression -------------------------------------------------------------------------------- [GA]CCA[CG][CT]AG -------------------------------------------------------------------------------- Time 12.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GKGTGGCA MEME-5 width = 8 sites = 5 llr = 50 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGTGGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C ::::::a: probability G a4a:aa:: matrix T :6:a:::: bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ****** Relative 1.5 * ****** Entropy 1.2 ******** (14.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGGCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGTGGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:66708528-66708548 7 1.84e-05 AGGACA GTGTGGCA GTCTGC chr2:217531505-217531525 13 1.84e-05 TACTGCCACT GTGTGGCA chr17:18120889-18120909 13 1.84e-05 TGTGTCCACA GTGTGGCA chr15:74927664-74927684 13 4.85e-05 TGTCGCCACT GGGTGGCA chr7:127849998-127850018 2 4.85e-05 A GGGTGGCA TCGTGTGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGTGGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:66708528-66708548 1.8e-05 6_[+5]_6 chr2:217531505-217531525 1.8e-05 12_[+5] chr17:18120889-18120909 1.8e-05 12_[+5] chr15:74927664-74927684 4.8e-05 12_[+5] chr7:127849998-127850018 4.8e-05 1_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGTGGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGTGGCA width=8 seqs=5 chr1:66708528-66708548 ( 7) GTGTGGCA 1 chr2:217531505-217531525 ( 13) GTGTGGCA 1 chr17:18120889-18120909 ( 13) GTGTGGCA 1 chr15:74927664-74927684 ( 13) GGGTGGCA 1 chr7:127849998-127850018 ( 2) GGGTGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGTGGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.59397 E= 1.4e+003 -897 -897 171 -897 -897 -897 39 168 -897 -897 171 -897 -897 -897 -897 242 -897 -897 171 -897 -897 -897 171 -897 -897 165 -897 -897 241 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGTGGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGTGGCA MEME-5 regular expression -------------------------------------------------------------------------------- G[TG]GTGGCA -------------------------------------------------------------------------------- Time 13.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:73140234-73140254 8.52e-05 3_[+2(3.30e-05)]_9 chr1:112912465-112912485 4.40e-01 20 chr2:60901873-60901893 3.09e-04 1_[+2(5.38e-05)]_11 chr17:34985903-34985923 3.93e-03 20 chr11:78356433-78356453 8.20e-04 20 chr1:159906364-159906384 6.64e-05 6_[+3(3.09e-05)]_6 chr22:46763689-46763709 9.92e-04 12_[+1(3.14e-05)] chr10:102921662-10292168 1.50e-01 20 chr7:150821185-150821205 2.24e-02 20 chr17:43717902-43717922 1.38e-04 20 chrX:104167005-104167025 4.51e-02 20 chr12:54973660-54973680 1.54e-03 5_[+3(4.98e-05)]_7 chr1:17036443-17036463 1.64e-01 20 chr10:71275557-71275577 5.74e-03 20 chr1:34098810-34098830 6.39e-02 20 chr2:10972614-10972634 2.43e-01 20 chr2:73089830-73089850 2.18e-03 20 chr3:51703465-51703485 6.80e-04 2_[+1(6.26e-05)]_10 chr15:68966520-68966540 6.94e-02 20 chr2:105986417-105986437 2.39e-01 20 chr1:27627453-27627473 1.31e-04 20 chr17:34074665-34074685 2.56e-03 20 chr8:74086735-74086755 7.98e-02 20 chr1:46035920-46035940 7.96e-01 20 chr1:16947696-16947716 1.83e-01 20 chr8:38268326-38268346 4.30e-02 20 chr11:20132600-20132620 2.45e-02 20 chr1:110596622-110596642 3.44e-06 8_[+1(3.14e-05)]_4 chr19:42104110-42104130 2.67e-02 20 chr7:31023383-31023403 7.08e-06 5_[+1(3.14e-05)]_7 chr9:34379510-34379530 3.26e-01 20 chr1:16951567-16951587 6.37e-02 20 chr2:43056152-43056172 1.15e-06 11_[+1(3.14e-05)]_1 chr10:104343745-10434376 6.33e-02 20 chr17:36571128-36571148 6.96e-05 3_[+2(3.30e-05)]_9 chr6:44064623-44064643 2.22e-05 20 chr5:1645180-1645200 1.39e-01 20 chr1:15427047-15427067 7.49e-03 20 chr1:46993872-46993892 4.33e-06 1_[+2(5.38e-05)]_11 chr1:7727765-7727785 1.93e-01 20 chr4:83660639-83660659 7.72e-01 20 chr16:57118313-57118333 3.44e-01 20 chr7:76145408-76145428 4.97e-02 20 chr15:74257260-74257280 9.17e-01 20 chr8:9688642-9688662 6.40e-02 20 chr15:45455409-45455429 1.25e-01 20 chr22:37713052-37713072 1.04e-02 20 chr17:42852328-42852348 7.05e-02 20 chr19:4804089-4804109 2.65e-02 20 chr9:139118129-139118149 5.24e-04 20 chr1:32059768-32059788 1.73e-02 5_[+1(6.26e-05)]_7 chr11:74991365-74991385 1.29e-02 9_[+4(5.53e-05)]_3 chr7:18705938-18705958 3.78e-04 20 chr3:38159643-38159663 2.84e-01 20 chr14:105837315-10583733 4.47e-02 20 chr14:69378481-69378501 9.37e-04 20 chr11:72296903-72296923 7.02e-03 20 chr15:63385955-63385975 4.44e-04 7_[+2(3.30e-05)]_5 chr10:79807212-79807232 1.84e-03 20 chr1:222628650-222628670 4.15e-03 20 chr9:124885428-124885448 5.06e-03 20 chr20:37676870-37676890 3.09e-04 1_[+2(5.38e-05)]_11 chr10:73468156-73468176 1.43e-01 20 chr15:33993084-33993104 5.61e-01 20 chr2:136555233-136555253 3.54e-03 20 chr1:168051665-168051685 3.03e-04 1_[+2(3.30e-05)]_11 chr11:7687141-7687161 4.24e-02 20 chr11:61666755-61666775 9.01e-03 11_[+4(5.53e-05)]_1 chr8:141647652-141647672 1.72e-01 20 chr14:55240900-55240920 1.41e-03 4_[+2(8.91e-05)]_8 chr2:113357762-113357782 3.67e-01 20 chr1:45118714-45118734 5.69e-02 20 chr16:2551369-2551389 1.53e-02 20 chr2:218650347-218650367 3.94e-01 20 chr12:125667864-12566788 6.81e-03 20 chr9:95397162-95397182 4.91e-03 5_[+2(5.38e-05)]_7 chr3:45079367-45079387 1.09e-01 20 chr17:48164998-48165018 7.42e-02 20 chr22:46938367-46938387 5.21e-05 20 chr5:176087965-176087985 3.44e-05 7_[+4(2.11e-05)]_5 chr3:137787595-137787615 7.85e-05 3_[+4(5.53e-05)]_9 chr8:135698004-135698024 1.18e-02 20 chr5:139013036-139013056 3.23e-04 20 chr16:2977220-2977240 2.47e-02 20 chr19:17966555-17966575 2.34e-05 3_[+2(3.30e-05)]_9 chr11:44560206-44560226 3.07e-01 20 chr11:92967952-92967972 1.17e-03 20 chr15:45145717-45145737 2.37e-02 20 chr2:9939969-9939989 8.60e-07 6_[+4(5.53e-05)]_6 chr12:118275222-11827524 3.37e-03 1_[+1(6.26e-05)]_11 chr17:17259543-17259563 2.42e-03 20 chr1:15757809-15757829 1.99e-03 4_[+1(3.14e-05)]_8 chr16:11012782-11012802 1.29e-03 1_[+2(3.30e-05)]_11 chr1:9927710-9927730 3.60e-02 20 chr3:70169703-70169723 2.26e-03 20 chr17:18120889-18120909 3.36e-05 2_[+3(4.26e-05)]_2_[+5(1.84e-05)] chr7:50485927-50485947 7.06e-02 20 chr1:55743389-55743409 7.22e-02 20 chr22:23881951-23881971 8.80e-01 20 chr15:70805278-70805298 3.64e-01 20 chr12:103969219-10396923 1.22e-02 20 chr3:192162482-192162502 1.08e-02 20 chr17:40115159-40115179 2.89e-05 10_[+1(3.14e-05)]_2 chr22:29641686-29641706 8.61e-03 20 chr11:4658290-4658310 7.13e-04 20 chr13:100308544-10030856 8.71e-05 4_[+4(6.77e-05)]_8 chr1:212185474-212185494 2.70e-03 20 chr17:30580222-30580242 1.03e-01 20 chr3:25938703-25938723 4.73e-04 20 chr15:75242904-75242924 6.48e-04 20 chr12:54095731-54095751 6.98e-04 20 chr2:70875199-70875219 5.26e-01 20 chr12:29470903-29470923 2.83e-03 20 chr11:131544031-13154405 1.61e-02 20 chr2:217531505-217531525 5.47e-03 12_[+5(1.84e-05)] chr2:85906482-85906502 1.00e-02 20 chr14:74829195-74829215 1.08e-04 10_[+1(8.18e-05)]_2 chr10:30681603-30681623 1.08e-05 2_[+1(3.14e-05)]_10 chr5:153990072-153990092 1.10e-02 20 chr3:116489852-116489872 1.06e-01 20 chr15:89448143-89448163 6.29e-04 20 chr11:62192345-62192365 2.22e-01 20 chr1:110648919-110648939 1.61e-04 20 chr10:104238881-10423890 8.40e-03 [+2(5.38e-05)]_12 chr20:34790921-34790941 4.74e-02 20 chr9:93677347-93677367 3.42e-04 20 chr12:131589374-13158939 7.40e-02 20 chr12:3182742-3182762 7.68e-05 20 chr2:85512758-85512778 4.69e-03 7_[+2(5.38e-05)]_5 chr10:104594866-10459488 2.72e-05 [+1(8.18e-05)]_12 chr7:131198456-131198476 3.24e-02 20 chr10:5671969-5671989 5.70e-01 20 chr1:11702655-11702675 1.34e-03 20 chr13:96130946-96130966 1.63e-02 20 chr6:36727117-36727137 2.01e-03 20 chr1:11898894-11898914 1.31e-05 7_[+1(8.18e-05)]_5 chr10:11800094-11800114 1.59e-02 3_[+2(5.38e-05)]_9 chr12:5131793-5131813 2.25e-03 8_[+1(8.18e-05)]_4 chr15:42281878-42281898 2.06e-01 20 chr2:110267875-110267895 1.38e-01 20 chr18:74111027-74111047 2.46e-01 20 chr14:105556984-10555700 5.00e-04 12_[+4(2.11e-05)] chr20:937261-937281 1.11e-02 20 chr13:30082445-30082465 3.65e-05 20 chr22:20144690-20144710 3.21e-06 1_[+4(2.11e-05)]_11 chr18:8988442-8988462 2.76e-02 20 chr10:86024511-86024531 2.32e-02 20 chr6:35209055-35209075 3.29e-02 20 chr5:133520029-133520049 2.43e-05 9_[+1(8.18e-05)]_3 chr3:156957077-156957097 3.61e-01 20 chr9:134631158-134631178 1.24e-02 20 chr1:11954174-11954194 5.83e-02 20 chr19:49804699-49804719 1.67e-04 20 chr9:34899728-34899748 2.84e-02 20 chr7:105683416-105683436 3.36e-03 20 chr11:17620673-17620693 3.01e-03 [+4(6.77e-05)]_12 chr19:41104661-41104681 2.82e-04 20 chr19:33634967-33634987 9.62e-03 20 chr6:43635127-43635147 1.18e-01 20 chr11:44308020-44308040 6.24e-02 20 chr17:66432710-66432730 1.76e-04 [+2(3.30e-05)]_12 chr5:174961232-174961252 7.30e-02 20 chr9:101737361-101737381 2.37e-01 20 chr16:68362700-68362720 8.69e-02 20 chr7:105817281-105817301 5.68e-04 1_[+5(1.84e-05)]_11 chr7:30780239-30780259 1.61e-05 1_[+2(5.38e-05)]_11 chr19:12958562-12958582 1.48e-01 20 chr20:23587379-23587399 2.58e-04 4_[+3(1.92e-05)]_8 chr11:122667015-12266703 5.71e-03 20 chr1:21596869-21596889 3.54e-01 20 chr2:97466890-97466910 2.62e-03 8_[+2(3.30e-05)]_4 chr11:73006658-73006678 6.64e-03 20 chr1:110319630-110319650 5.23e-04 20 chr10:79479489-79479509 7.28e-02 20 chr3:140911291-140911311 4.67e-02 20 chr22:37853533-37853553 8.14e-04 6_[+2(8.91e-05)]_6 chr21:27174024-27174044 4.57e-02 20 chr1:116138634-116138654 5.86e-01 20 chr9:35696724-35696744 7.67e-04 20 chr1:26743693-26743713 2.00e-03 20 chr7:105697544-105697564 3.96e-01 20 chr10:96892858-96892878 1.00e-03 20 chr1:109820227-109820247 3.25e-02 20 chr7:30978544-30978564 1.22e-04 [+4(2.11e-05)]_12 chrX:132926645-132926665 3.34e-01 20 chr13:20737700-20737720 9.73e-03 4_[+2(8.91e-05)]_8 chr17:48860677-48860697 9.19e-03 10_[+3(4.26e-05)]_2 chr22:45974051-45974071 2.74e-04 11_[+1(3.14e-05)]_1 chr6:29815987-29816007 2.29e-04 7_[+1(3.14e-05)]_5 chr3:134027381-134027401 3.98e-03 11_[+4(5.53e-05)]_1 chr10:79471349-79471369 7.41e-02 20 chr11:47174810-47174830 2.57e-01 20 chr6:33216239-33216259 2.34e-01 20 chr15:74615094-74615114 1.20e-02 5_[+2(5.38e-05)]_7 chr7:73831888-73831908 7.64e-05 20 chr1:66708528-66708548 1.67e-02 6_[+5(1.84e-05)]_6 chr7:127849998-127850018 1.96e-04 1_[+5(4.85e-05)]_11 chr16:55499157-55499177 9.63e-01 20 chr1:91630996-91631016 3.90e-04 20 chr15:45410469-45410489 2.32e-01 20 chr19:34269082-34269102 8.28e-02 20 chr15:74927664-74927684 7.01e-05 12_[+5(4.85e-05)] chr3:50653526-50653546 1.53e-02 20 chr1:23730617-23730637 7.75e-01 20 chr7:131374052-131374072 2.37e-03 4_[+3(8.19e-05)]_8 chr16:67011732-67011752 6.65e-03 20 chr7:123264806-123264826 4.06e-02 [+4(6.77e-05)]_12 chr3:17882898-17882918 3.36e-03 12_[+3(8.19e-05)] chr10:102193717-10219373 4.23e-01 20 chr22:45831739-45831759 6.68e-04 20 chr9:129263321-129263341 3.11e-02 20 chr15:74913581-74913601 4.66e-01 20 chr3:142547715-142547735 1.74e-01 20 chr8:57154656-57154676 1.94e-03 20 chr2:219894568-219894588 5.94e-04 7_[+4(5.53e-05)]_5 chr3:14675497-14675517 2.66e-02 20 chr10:97134549-97134569 3.57e-04 20 chr5:175156972-175156992 3.48e-03 20 chr1:211828716-211828736 1.48e-02 20 chr12:57576924-57576944 5.32e-02 20 chr6:37659965-37659985 3.12e-03 20 chr8:142397024-142397044 4.50e-01 20 chr1:1837855-1837875 8.10e-01 20 chr19:33897918-33897938 3.00e-03 5_[+3(6.97e-05)]_7 chr4:1345808-1345828 1.90e-03 20 chr1:43994964-43994984 3.40e-02 20 chr3:197633014-197633034 9.60e-03 20 chr2:241790800-241790820 7.56e-03 20 chr7:35577208-35577228 4.70e-04 20 chr17:7259500-7259520 8.76e-03 20 chr2:120399314-120399334 2.18e-03 8_[+4(5.53e-05)]_4 chr8:6698322-6698342 9.96e-03 20 chr19:42800372-42800392 4.54e-03 20 chr18:46201785-46201805 2.11e-02 20 chr9:101610996-101611016 3.94e-04 12_[+1(3.14e-05)] chr2:7237555-7237575 1.10e-03 6_[+1(3.14e-05)]_6 chr9:115555681-115555701 2.10e-02 7_[+2(5.38e-05)]_5 chr11:117297094-11729711 1.17e-02 7_[+1(8.18e-05)]_5 chr14:105175140-10517516 4.41e-03 6_[+2(5.38e-05)]_6 chr13:77477874-77477894 4.94e-02 20 chr8:102339352-102339372 7.53e-05 4_[+3(3.09e-05)]_8 chr13:113597192-11359721 8.03e-04 20 chr1:43693099-43693119 9.47e-07 3_[+3(3.09e-05)]_9 chr11:65585842-65585862 9.92e-01 20 chr17:34476518-34476538 3.54e-02 20 chr17:26207225-26207245 4.33e-03 20 chr10:99332175-99332195 1.74e-03 3_[+1(3.14e-05)]_9 chr1:155959345-155959365 8.60e-03 20 chr16:57610449-57610469 1.10e-01 20 chr2:86041503-86041523 5.74e-03 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************