******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CHD4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:116503027-116503047 1.0000 20 chr18:46338362-46338382 1.0000 20 chr5:139912796-139912816 1.0000 20 chr2:242807907-242807927 1.0000 20 chr12:10349372-10349392 1.0000 20 chr22:31943523-31943543 1.0000 20 chr3:194048218-194048238 1.0000 20 chr16:81849666-81849686 1.0000 20 chr5:131761074-131761094 1.0000 20 chr1:46048500-46048520 1.0000 20 chr8:129116335-129116355 1.0000 20 chr6:42017050-42017070 1.0000 20 chr14:105126791-10512681 1.0000 20 chr1:12106683-12106703 1.0000 20 chr17:1087620-1087640 1.0000 20 chr9:79086960-79086980 1.0000 20 chr6:27860070-27860090 1.0000 20 chr3:20090810-20090830 1.0000 20 chr19:7515349-7515369 1.0000 20 chr1:86481726-86481746 1.0000 20 chr15:40346605-40346625 1.0000 20 chr3:119419942-119419962 1.0000 20 chr16:27437498-27437518 1.0000 20 chr5:1333612-1333632 1.0000 20 chr20:5634429-5634449 1.0000 20 chr20:46068493-46068513 1.0000 20 chr4:185886303-185886323 1.0000 20 chr20:52260264-52260284 1.0000 20 chr9:130789748-130789768 1.0000 20 chr22:18554060-18554080 1.0000 20 chr2:128507772-128507792 1.0000 20 chr14:56046262-56046282 1.0000 20 chr10:63805420-63805440 1.0000 20 chr6:41674359-41674379 1.0000 20 chr1:23945740-23945760 1.0000 20 chr19:35822156-35822176 1.0000 20 chr6:157076410-157076430 1.0000 20 chr6:37129323-37129343 1.0000 20 chr16:84760150-84760170 1.0000 20 chr21:43447524-43447544 1.0000 20 chrX:223164-223184 1.0000 20 chr7:97849251-97849271 1.0000 20 chr4:153280766-153280786 1.0000 20 chr21:43712789-43712809 1.0000 20 chr22:41808952-41808972 1.0000 20 chr2:242455960-242455980 1.0000 20 chr3:197186577-197186597 1.0000 20 chr7:30025407-30025427 1.0000 20 chr1:167684278-167684298 1.0000 20 chr18:19283846-19283866 1.0000 20 chr19:44269022-44269042 1.0000 20 chr1:36615768-36615788 1.0000 20 chr9:116502095-116502115 1.0000 20 chr22:43088603-43088623 1.0000 20 chr16:89252491-89252511 1.0000 20 chr16:47052818-47052838 1.0000 20 chr4:39816431-39816451 1.0000 20 chr7:99214220-99214240 1.0000 20 chr20:62358599-62358619 1.0000 20 chr19:11206364-11206384 1.0000 20 chr17:76133668-76133688 1.0000 20 chr12:1663430-1663450 1.0000 20 chr16:89252796-89252816 1.0000 20 chr7:47513888-47513908 1.0000 20 chr22:37559280-37559300 1.0000 20 chr1:203258477-203258497 1.0000 20 chr2:231466887-231466907 1.0000 20 chr9:132788868-132788888 1.0000 20 chrX:2183755-2183775 1.0000 20 chr5:1792689-1792709 1.0000 20 chr17:57910119-57910139 1.0000 20 chr2:38635524-38635544 1.0000 20 chr2:70362141-70362161 1.0000 20 chrX:222861-222881 1.0000 20 chr11:102430905-10243092 1.0000 20 chr12:121862875-12186289 1.0000 20 chr17:25794396-25794416 1.0000 20 chr17:43660770-43660790 1.0000 20 chr2:64068779-64068799 1.0000 20 chr2:62576189-62576209 1.0000 20 chr3:49984080-49984100 1.0000 20 chr2:242699842-242699862 1.0000 20 chr22:37618711-37618731 1.0000 20 chr12:6539427-6539447 1.0000 20 chr1:156121196-156121216 1.0000 20 chr13:99856568-99856588 1.0000 20 chr2:231338068-231338088 1.0000 20 chr19:16229985-16230005 1.0000 20 chr9:36551101-36551121 1.0000 20 chr12:121969484-12196950 1.0000 20 chr19:2841081-2841101 1.0000 20 chr4:38133576-38133596 1.0000 20 chr3:81866583-81866603 1.0000 20 chr1:28201503-28201523 1.0000 20 chr19:10526397-10526417 1.0000 20 chr6:30705061-30705081 1.0000 20 chr5:116102850-116102870 1.0000 20 chr12:90250966-90250986 1.0000 20 chr5:42993322-42993342 1.0000 20 chr15:91137663-91137683 1.0000 20 chr8:28300295-28300315 1.0000 20 chr6:27471460-27471480 1.0000 20 chr19:10497412-10497432 1.0000 20 chr1:249167033-249167053 1.0000 20 chr20:46126835-46126855 1.0000 20 chr5:64357711-64357731 1.0000 20 chr18:9061992-9062012 1.0000 20 chr10:63747574-63747594 1.0000 20 chr21:45207045-45207065 1.0000 20 chr19:3133137-3133157 1.0000 20 chr19:45255896-45255916 1.0000 20 chr22:24551708-24551728 1.0000 20 chr5:131856171-131856191 1.0000 20 chr19:5317348-5317368 1.0000 20 chr12:25103050-25103070 1.0000 20 chr5:77591162-77591182 1.0000 20 chr10:103949668-10394968 1.0000 20 chr22:40931189-40931209 1.0000 20 chr19:16371110-16371130 1.0000 20 chr4:48199329-48199349 1.0000 20 chr19:19270915-19270935 1.0000 20 chr9:136214196-136214216 1.0000 20 chr1:59281679-59281699 1.0000 20 chr12:123205358-12320537 1.0000 20 chr19:40669337-40669357 1.0000 20 chr19:40192163-40192183 1.0000 20 chr19:8334492-8334512 1.0000 20 chr2:20364648-20364668 1.0000 20 chr10:104941467-10494148 1.0000 20 chr3:57994690-57994710 1.0000 20 chr19:7153272-7153292 1.0000 20 chr2:71558515-71558535 1.0000 20 chr18:60866516-60866536 1.0000 20 chr19:6280476-6280496 1.0000 20 chr2:121067515-121067535 1.0000 20 chr8:101513017-101513037 1.0000 20 chr9:33871961-33871981 1.0000 20 chr3:171137790-171137810 1.0000 20 chr7:5274546-5274566 1.0000 20 chr17:29465417-29465437 1.0000 20 chr15:66106107-66106127 1.0000 20 chr1:6296364-6296384 1.0000 20 chr19:55133641-55133661 1.0000 20 chr1:8455649-8455669 1.0000 20 chr15:75073940-75073960 1.0000 20 chr19:2945396-2945416 1.0000 20 chr19:44269222-44269242 1.0000 20 chr1:221950692-221950712 1.0000 20 chr3:15403666-15403686 1.0000 20 chr8:8191564-8191584 1.0000 20 chr4:114485784-114485804 1.0000 20 chr18:51787815-51787835 1.0000 20 chr9:125591263-125591283 1.0000 20 chr17:41116770-41116790 1.0000 20 chr22:50778875-50778895 1.0000 20 chr5:176925000-176925020 1.0000 20 chr1:224374033-224374053 1.0000 20 chr16:10986027-10986047 1.0000 20 chr15:63766744-63766764 1.0000 20 chr5:176839475-176839495 1.0000 20 chr22:37680823-37680843 1.0000 20 chr5:140893475-140893495 1.0000 20 chr22:29563157-29563177 1.0000 20 chr17:4467229-4467249 1.0000 20 chr5:168006126-168006146 1.0000 20 chr3:5179171-5179191 1.0000 20 chr8:134511160-134511180 1.0000 20 chr1:145396290-145396310 1.0000 20 chr1:206288255-206288275 1.0000 20 chrX:2182576-2182596 1.0000 20 chr19:7409418-7409438 1.0000 20 chr8:102636586-102636606 1.0000 20 chr7:75292748-75292768 1.0000 20 chr11:47545824-47545844 1.0000 20 chr2:25449202-25449222 1.0000 20 chr19:51897102-51897122 1.0000 20 chr12:125260006-12526002 1.0000 20 chr9:37411231-37411251 1.0000 20 chr4:177045373-177045393 1.0000 20 chr6:139695137-139695157 1.0000 20 chr3:196139671-196139691 1.0000 20 chr19:47103692-47103712 1.0000 20 chr21:38361819-38361839 1.0000 20 chr3:73000662-73000682 1.0000 20 chr15:75387257-75387277 1.0000 20 chr21:45206829-45206849 1.0000 20 chr20:45827034-45827054 1.0000 20 chr16:67096451-67096471 1.0000 20 chr7:410938-410958 1.0000 20 chr20:61688357-61688377 1.0000 20 chr19:2475567-2475587 1.0000 20 chr2:242456205-242456225 1.0000 20 chr10:125919649-12591966 1.0000 20 chr12:58292362-58292382 1.0000 20 chr2:70348566-70348586 1.0000 20 chr17:16851308-16851328 1.0000 20 chr9:137464774-137464794 1.0000 20 chr3:133291136-133291156 1.0000 20 chr1:160401922-160401942 1.0000 20 chr1:1760228-1760248 1.0000 20 chr10:12505428-12505448 1.0000 20 chr22:34291884-34291904 1.0000 20 chr11:327538-327558 1.0000 20 chr8:22552251-22552271 1.0000 20 chr16:10832492-10832512 1.0000 20 chr13:34129153-34129173 1.0000 20 chr11:9738188-9738208 1.0000 20 chr10:130262782-13026280 1.0000 20 chr16:86035704-86035724 1.0000 20 chr15:66113817-66113837 1.0000 20 chr19:50179368-50179388 1.0000 20 chr4:140899504-140899524 1.0000 20 chr8:98643365-98643385 1.0000 20 chr7:73645146-73645166 1.0000 20 chr5:10576453-10576473 1.0000 20 chr16:11876845-11876865 1.0000 20 chr19:7766448-7766468 1.0000 20 chr17:48228843-48228863 1.0000 20 chr9:132792971-132792991 1.0000 20 chr5:1489226-1489246 1.0000 20 chr10:12306121-12306141 1.0000 20 chr14:50988745-50988765 1.0000 20 chr19:2051639-2051659 1.0000 20 chr20:34199473-34199493 1.0000 20 chr1:25060139-25060159 1.0000 20 chr1:21620723-21620743 1.0000 20 chr19:7414297-7414317 1.0000 20 chr19:10542065-10542085 1.0000 20 chr4:40517828-40517848 1.0000 20 chr10:6178002-6178022 1.0000 20 chr11:59333404-59333424 1.0000 20 chr1:206964955-206964975 1.0000 20 chr14:96128099-96128119 1.0000 20 chr5:43120680-43120700 1.0000 20 chr5:77148830-77148850 1.0000 20 chr15:85279541-85279561 1.0000 20 chr9:130878342-130878362 1.0000 20 chr12:90647345-90647365 1.0000 20 chr16:67820621-67820641 1.0000 20 chr12:116773803-11677382 1.0000 20 chr16:89253285-89253305 1.0000 20 chr9:35914344-35914364 1.0000 20 chr5:153882889-153882909 1.0000 20 chr11:107712203-10771222 1.0000 20 chr1:9686891-9686911 1.0000 20 chr16:89253508-89253528 1.0000 20 chr16:47052591-47052611 1.0000 20 chr11:76338395-76338415 1.0000 20 chrX:37635923-37635943 1.0000 20 chr4:128919192-128919212 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_CHD4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CHD4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.236 C 0.251 G 0.244 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.236 C 0.251 G 0.244 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MCACACCC MEME-1 width = 8 sites = 22 llr = 172 E-value = 1.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCACACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6:a:9:2: pos.-specific C 4a:8:88a probability G :::211:: matrix T :::::1:: bits 2.1 * 1.9 * 1.7 ** * 1.5 ** * * Relative 1.3 **** ** Entropy 1.0 **** ** (11.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACCC consensus C G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:410938-410958 7 1.31e-05 AGTCCC ACACACCC GAGGGG chr21:45206829-45206849 5 1.31e-05 CATG ACACACCC TGTGTGCG chr21:45207045-45207065 7 1.31e-05 TGCGCG ACACACCC ACTGTG chr2:242455960-242455980 7 1.31e-05 cccaac acacaccc aacaca chr12:58292362-58292382 9 2.70e-05 CCTTCCTG CCACACCC TCTA chr2:20364648-20364668 6 3.93e-05 acacc acacacac cacacac chr7:47513888-47513908 5 3.93e-05 ataa acacacac agcacaca chr3:194048218-194048238 8 3.93e-05 acacaca acacacac aacac chr21:43712789-43712809 13 6.52e-05 acggtgcaca ccacacac chr19:44269022-44269042 13 9.22e-05 ccatgcctgg ccAGACCC chr17:16851308-16851328 11 1.05e-04 atgaaatact acacagcc at chr2:242456205-242456225 12 1.19e-04 tatacccaac acacatcc c chr10:103949668-10394968 7 1.33e-04 gagtga ccacgccc agctat chr19:2841081-2841101 10 1.33e-04 CTGGAGTTC CCACGCCC GTC chr18:60866516-60866536 7 1.45e-04 acatgc acagacac agagac chr1:203258477-203258497 11 2.00e-04 AAGGCCCCTC CCACATCC TT chr16:89253285-89253305 13 2.50e-04 Ggtgctctgc aaacaccc chr19:7153272-7153292 13 2.50e-04 tgcacacctc acacacca chr4:128919192-128919212 6 2.88e-04 cacca ccacaacc aactaat chr5:140893475-140893495 3 3.13e-04 AG ACAGAGCC ACTGCGGTTA chr19:8334492-8334512 12 3.81e-04 tagtggtcct ccaggccc c chr19:2475567-2475587 5 4.07e-04 CGCT GCAGACCC ATTACTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:410938-410958 1.3e-05 6_[+1]_6 chr21:45206829-45206849 1.3e-05 4_[+1]_8 chr21:45207045-45207065 1.3e-05 6_[+1]_6 chr2:242455960-242455980 1.3e-05 6_[+1]_6 chr12:58292362-58292382 2.7e-05 8_[+1]_4 chr2:20364648-20364668 3.9e-05 5_[+1]_7 chr7:47513888-47513908 3.9e-05 4_[+1]_8 chr3:194048218-194048238 3.9e-05 7_[+1]_5 chr21:43712789-43712809 6.5e-05 12_[+1] chr19:44269022-44269042 9.2e-05 12_[+1] chr17:16851308-16851328 0.0001 10_[+1]_2 chr2:242456205-242456225 0.00012 11_[+1]_1 chr10:103949668-10394968 0.00013 6_[+1]_6 chr19:2841081-2841101 0.00013 9_[+1]_3 chr18:60866516-60866536 0.00015 6_[+1]_6 chr1:203258477-203258497 0.0002 10_[+1]_2 chr16:89253285-89253305 0.00025 12_[+1] chr19:7153272-7153292 0.00025 12_[+1] chr4:128919192-128919212 0.00029 5_[+1]_7 chr5:140893475-140893495 0.00031 2_[+1]_10 chr19:8334492-8334512 0.00038 11_[+1]_1 chr19:2475567-2475587 0.00041 4_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCACACCC width=8 seqs=22 chr7:410938-410958 ( 7) ACACACCC 1 chr21:45206829-45206849 ( 5) ACACACCC 1 chr21:45207045-45207065 ( 7) ACACACCC 1 chr2:242455960-242455980 ( 7) ACACACCC 1 chr12:58292362-58292382 ( 9) CCACACCC 1 chr2:20364648-20364668 ( 6) ACACACAC 1 chr7:47513888-47513908 ( 5) ACACACAC 1 chr3:194048218-194048238 ( 8) ACACACAC 1 chr21:43712789-43712809 ( 13) CCACACAC 1 chr19:44269022-44269042 ( 13) CCAGACCC 1 chr17:16851308-16851328 ( 11) ACACAGCC 1 chr2:242456205-242456225 ( 12) ACACATCC 1 chr10:103949668-10394968 ( 7) CCACGCCC 1 chr19:2841081-2841101 ( 10) CCACGCCC 1 chr18:60866516-60866536 ( 7) ACAGACAC 1 chr1:203258477-203258497 ( 11) CCACATCC 1 chr16:89253285-89253305 ( 13) AAACACCC 1 chr19:7153272-7153292 ( 13) ACACACCA 1 chr4:128919192-128919212 ( 6) CCACAACC 1 chr5:140893475-140893495 ( 3) ACAGAGCC 1 chr19:8334492-8334512 ( 12) CCAGGCCC 1 chr19:2475567-2475587 ( 5) GCAGACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.22846 E= 1.5e-004 132 53 -242 -1110 -237 192 -1110 -1110 208 -1110 -1110 -1110 -1110 162 -10 -1110 187 -1110 -84 -1110 -237 162 -143 -156 -5 162 -1110 -1110 -237 192 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.5e-004 0.590909 0.363636 0.045455 0.000000 0.045455 0.954545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.772727 0.227273 0.000000 0.863636 0.000000 0.136364 0.000000 0.045455 0.772727 0.090909 0.090909 0.227273 0.772727 0.000000 0.000000 0.045455 0.954545 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACACCC MEME-1 regular expression -------------------------------------------------------------------------------- [AC]CA[CG]AC[CA]C -------------------------------------------------------------------------------- Time 1.92 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGTGCTS MEME-2 width = 8 sites = 16 llr = 131 E-value = 3.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGTGCTS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 92:::321 pos.-specific C 1::::7:6 probability G :89:a::4 matrix T ::1a::8: bits 2.1 * 1.9 ** 1.7 * *** 1.5 * *** Relative 1.3 ***** * Entropy 1.0 ******* (11.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGTGCTC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTGCTS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:89253508-89253528 6 1.55e-05 AGAAT AGGTGCTC TGCAAAC chr16:89253285-89253305 2 1.55e-05 T AGgtgctc tgcaaacacc chr16:89252796-89252816 4 1.55e-05 agt aggtgctc tgtaaacgc chr5:153882889-153882909 3 3.06e-05 GG AGGTGCTG GTTGGCGTGG chr1:224374033-224374053 1 3.06e-05 . AGGTGCTG ATTGATACTT chr19:11206364-11206384 5 4.52e-05 actc aggtgatc cgcccact chr22:31943523-31943543 8 4.52e-05 tgacttc aggtgatc cgcct chr19:19270915-19270935 4 7.30e-05 tac aggtgcac accatcaca chr9:33871961-33871981 10 1.16e-04 agcctccca aagtgctg gca chr2:231466887-231466907 10 1.16e-04 ggcctccca aagtgctg gga chr19:16229985-16230005 9 1.43e-04 TTGACTCC AGGTGCTA TTCA chr19:10526397-10526417 11 1.57e-04 tcctgacctc aagtgatc ca chr1:8455649-8455669 8 1.70e-04 AAAAAAA AGGTGAAG GTGAG chr12:1663430-1663450 6 1.70e-04 CTTCC AGGTGAAG GTCGAGT chr11:76338395-76338415 13 2.31e-04 AAGAGGCGGA AGTTGCTC chr15:40346605-40346625 5 2.31e-04 GGCC CGGTGCTC CTCTTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTGCTS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89253508-89253528 1.6e-05 5_[+2]_7 chr16:89253285-89253305 1.6e-05 1_[+2]_11 chr16:89252796-89252816 1.6e-05 3_[+2]_9 chr5:153882889-153882909 3.1e-05 2_[+2]_10 chr1:224374033-224374053 3.1e-05 [+2]_12 chr19:11206364-11206384 4.5e-05 4_[+2]_8 chr22:31943523-31943543 4.5e-05 7_[+2]_5 chr19:19270915-19270935 7.3e-05 3_[+2]_9 chr9:33871961-33871981 0.00012 9_[+2]_3 chr2:231466887-231466907 0.00012 9_[+2]_3 chr19:16229985-16230005 0.00014 8_[+2]_4 chr19:10526397-10526417 0.00016 10_[+2]_2 chr1:8455649-8455669 0.00017 7_[+2]_5 chr12:1663430-1663450 0.00017 5_[+2]_7 chr11:76338395-76338415 0.00023 12_[+2] chr15:40346605-40346625 0.00023 4_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTGCTS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGTGCTS width=8 seqs=16 chr16:89253508-89253528 ( 6) AGGTGCTC 1 chr16:89253285-89253305 ( 2) AGGTGCTC 1 chr16:89252796-89252816 ( 4) AGGTGCTC 1 chr5:153882889-153882909 ( 3) AGGTGCTG 1 chr1:224374033-224374053 ( 1) AGGTGCTG 1 chr19:11206364-11206384 ( 5) AGGTGATC 1 chr22:31943523-31943543 ( 8) AGGTGATC 1 chr19:19270915-19270935 ( 4) AGGTGCAC 1 chr9:33871961-33871981 ( 10) AAGTGCTG 1 chr2:231466887-231466907 ( 10) AAGTGCTG 1 chr19:16229985-16230005 ( 9) AGGTGCTA 1 chr19:10526397-10526417 ( 11) AAGTGATC 1 chr1:8455649-8455669 ( 8) AGGTGAAG 1 chr12:1663430-1663450 ( 6) AGGTGAAG 1 chr11:76338395-76338415 ( 13) AGTTGCTC 1 chr15:40346605-40346625 ( 5) CGGTGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTGCTS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.6591 E= 3.3e-001 199 -201 -1064 -1064 -33 -1064 173 -1064 -1064 -1064 194 -210 -1064 -1064 -1064 190 -1064 -1064 203 -1064 41 145 -1064 -1064 -33 -1064 -1064 160 -191 116 62 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTGCTS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.3e-001 0.937500 0.062500 0.000000 0.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.312500 0.687500 0.000000 0.000000 0.187500 0.000000 0.000000 0.812500 0.062500 0.562500 0.375000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTGCTS MEME-2 regular expression -------------------------------------------------------------------------------- AGGTG[CA]T[CG] -------------------------------------------------------------------------------- Time 2.65 secs. ******************************************************************************** ******************************************************************************** MOTIF TAAAAATW MEME-3 width = 8 sites = 6 llr = 61 E-value = 4.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAAAATW MEME-3 Description -------------------------------------------------------------------------------- Simplified A :aaaaa:5 pos.-specific C :::::::: probability G :::::::2 matrix T a:::::a3 bits 2.1 ***** 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.0 ******* (14.8 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAAAAATA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAATW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:125260006-12526002 8 1.24e-05 gaaaagg taaaaata gctag chr12:123205358-12320537 3 1.24e-05 ac taaaaata caaaaattag chr9:136214196-136214216 12 1.24e-05 ccaactctac taaaaata c chr1:145396290-145396310 4 2.65e-05 tct taaaaatt ctttttctg chr19:55133641-55133661 7 2.65e-05 tgaatt taaaaatt gctttt chr17:48228843-48228863 8 3.93e-05 cacttgg taaaaatg cagat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAATW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:125260006-12526002 1.2e-05 7_[+3]_5 chr12:123205358-12320537 1.2e-05 2_[+3]_10 chr9:136214196-136214216 1.2e-05 11_[+3]_1 chr1:145396290-145396310 2.7e-05 3_[+3]_9 chr19:55133641-55133661 2.7e-05 6_[+3]_6 chr17:48228843-48228863 3.9e-05 7_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAATW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAAAATW width=8 seqs=6 chr12:125260006-12526002 ( 8) TAAAAATA 1 chr12:123205358-12320537 ( 3) TAAAAATA 1 chr9:136214196-136214216 ( 12) TAAAAATA 1 chr1:145396290-145396310 ( 4) TAAAAATT 1 chr19:55133641-55133661 ( 7) TAAAAATT 1 chr17:48228843-48228863 ( 8) TAAAAATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAATW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.1796 E= 4.9e+001 -923 -923 -923 190 208 -923 -923 -923 208 -923 -923 -923 208 -923 -923 -923 208 -923 -923 -923 208 -923 -923 -923 -923 -923 -923 190 108 -923 -55 31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAATW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.9e+001 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.166667 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAATW MEME-3 regular expression -------------------------------------------------------------------------------- TAAAAAT[AT] -------------------------------------------------------------------------------- Time 4.30 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGKGAG MEME-4 width = 8 sites = 10 llr = 88 E-value = 3.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGKGAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::22:a: pos.-specific C 1::::::: probability G :::85a:9 matrix T 9aa:3::1 bits 2.1 ** 1.9 ** ** 1.7 ** ** 1.5 *** *** Relative 1.3 **** *** Entropy 1.0 **** *** (12.7 bits) 0.8 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGGGAG consensus AT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGKGAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:130878342-130878362 6 1.61e-05 agcac tttgggag gctaagg chr1:6296364-6296384 1 1.61e-05 . tttgggag gccgaggctg chr15:91137663-91137683 12 1.61e-05 AGCTGGATTT TTTGGGAG A chr19:45255896-45255916 3 3.38e-05 TG Tttgtgag gctgctgaga chr19:7409418-7409438 7 4.94e-05 cagtac tttgagag gccgag chr13:99856568-99856588 9 4.94e-05 GGCTGACT TTTGAGAG TTTG chr1:1760228-1760248 8 6.49e-05 ccaacac tttaggag gtcaa chr19:6280476-6280496 12 8.20e-05 cttttttttt tttatgag a chr6:157076410-157076430 6 1.30e-04 agtgc tttgggat gccaaag chr12:10349372-10349392 1 1.46e-04 . CTTGtgag gactaagctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGKGAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:130878342-130878362 1.6e-05 5_[+4]_7 chr1:6296364-6296384 1.6e-05 [+4]_12 chr15:91137663-91137683 1.6e-05 11_[+4]_1 chr19:45255896-45255916 3.4e-05 2_[+4]_10 chr19:7409418-7409438 4.9e-05 6_[+4]_6 chr13:99856568-99856588 4.9e-05 8_[+4]_4 chr1:1760228-1760248 6.5e-05 7_[+4]_5 chr19:6280476-6280496 8.2e-05 11_[+4]_1 chr6:157076410-157076430 0.00013 5_[+4]_7 chr12:10349372-10349392 0.00015 [+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGKGAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGKGAG width=8 seqs=10 chr9:130878342-130878362 ( 6) TTTGGGAG 1 chr1:6296364-6296384 ( 1) TTTGGGAG 1 chr15:91137663-91137683 ( 12) TTTGGGAG 1 chr19:45255896-45255916 ( 3) TTTGTGAG 1 chr19:7409418-7409438 ( 7) TTTGAGAG 1 chr13:99856568-99856588 ( 9) TTTGAGAG 1 chr1:1760228-1760248 ( 8) TTTAGGAG 1 chr19:6280476-6280496 ( 12) TTTATGAG 1 chr6:157076410-157076430 ( 6) TTTGGGAT 1 chr12:10349372-10349392 ( 1) CTTGTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGKGAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 3.4e+002 -997 -133 -997 174 -997 -997 -997 190 -997 -997 -997 190 -24 -997 171 -997 -24 -997 103 16 -997 -997 203 -997 208 -997 -997 -997 -997 -997 188 -142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGKGAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.4e+002 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.500000 0.300000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.900000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGKGAG MEME-4 regular expression -------------------------------------------------------------------------------- TTT[GA][GTA]GAG -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAAAA MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:a:aaaa pos.-specific C :::::::: probability G :a:a:::: matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:38133576-38133596 3 1.03e-05 GA AGAGAAAA TAAGATTGTT chr5:1792689-1792709 9 1.03e-05 tttttagt agagaaaa ggtt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:38133576-38133596 1e-05 2_[+5]_10 chr5:1792689-1792709 1e-05 8_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAAAA width=8 seqs=2 chr4:38133576-38133596 ( 3) AGAGAAAA 1 chr5:1792689-1792709 ( 9) AGAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.7e+003 208 -765 -765 -765 -765 -765 203 -765 208 -765 -765 -765 -765 -765 203 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAA MEME-5 regular expression -------------------------------------------------------------------------------- AGAGAAAA -------------------------------------------------------------------------------- Time 10.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:116503027-116503047 8.34e-01 20 chr18:46338362-46338382 9.98e-01 20 chr5:139912796-139912816 4.77e-01 20 chr2:242807907-242807927 8.79e-01 20 chr12:10349372-10349392 8.95e-02 20 chr22:31943523-31943543 4.13e-02 7_[+2(4.52e-05)]_5 chr3:194048218-194048238 1.74e-02 7_[+1(3.93e-05)]_5 chr16:81849666-81849686 4.37e-03 20 chr5:131761074-131761094 8.72e-01 20 chr1:46048500-46048520 8.83e-01 20 chr8:129116335-129116355 4.99e-01 20 chr6:42017050-42017070 3.64e-01 20 chr14:105126791-10512681 6.09e-01 20 chr1:12106683-12106703 1.00e+00 20 chr17:1087620-1087640 8.98e-01 20 chr9:79086960-79086980 1.64e-01 20 chr6:27860070-27860090 9.39e-01 20 chr3:20090810-20090830 5.27e-01 20 chr19:7515349-7515369 9.98e-01 20 chr1:86481726-86481746 8.82e-01 20 chr15:40346605-40346625 2.64e-01 20 chr3:119419942-119419962 4.78e-01 20 chr16:27437498-27437518 3.56e-01 20 chr5:1333612-1333632 9.88e-01 20 chr20:5634429-5634449 8.54e-01 20 chr20:46068493-46068513 3.37e-01 20 chr4:185886303-185886323 9.26e-01 20 chr20:52260264-52260284 8.94e-01 20 chr9:130789748-130789768 5.49e-01 20 chr22:18554060-18554080 2.07e-01 20 chr2:128507772-128507792 1.82e-01 20 chr14:56046262-56046282 9.93e-01 20 chr10:63805420-63805440 9.24e-01 20 chr6:41674359-41674379 7.50e-01 20 chr1:23945740-23945760 3.94e-01 20 chr19:35822156-35822176 9.94e-01 20 chr6:157076410-157076430 1.13e-01 20 chr6:37129323-37129343 8.29e-02 20 chr16:84760150-84760170 5.21e-01 20 chr21:43447524-43447544 9.19e-01 20 chrX:223164-223184 7.12e-01 20 chr7:97849251-97849271 3.28e-03 20 chr4:153280766-153280786 2.54e-02 20 chr21:43712789-43712809 3.23e-03 12_[+1(6.52e-05)] chr22:41808952-41808972 9.90e-01 20 chr2:242455960-242455980 2.76e-02 6_[+1(1.31e-05)]_6 chr3:197186577-197186597 5.28e-01 20 chr7:30025407-30025427 9.88e-01 20 chr1:167684278-167684298 8.13e-01 20 chr18:19283846-19283866 2.90e-01 20 chr19:44269022-44269042 1.30e-01 12_[+1(9.22e-05)] chr1:36615768-36615788 9.46e-01 20 chr9:116502095-116502115 9.33e-01 20 chr22:43088603-43088623 8.89e-01 20 chr16:89252491-89252511 3.69e-01 20 chr16:47052818-47052838 1.31e-01 20 chr4:39816431-39816451 8.88e-01 20 chr7:99214220-99214240 9.60e-01 20 chr20:62358599-62358619 3.13e-01 20 chr19:11206364-11206384 4.52e-02 4_[+2(4.52e-05)]_8 chr17:76133668-76133688 4.56e-01 20 chr12:1663430-1663450 7.56e-02 20 chr16:89252796-89252816 2.34e-02 3_[+2(1.55e-05)]_9 chr7:47513888-47513908 3.04e-03 4_[+1(3.93e-05)]_8 chr22:37559280-37559300 5.62e-01 20 chr1:203258477-203258497 2.59e-01 20 chr2:231466887-231466907 1.10e-01 20 chr9:132788868-132788888 8.36e-01 20 chrX:2183755-2183775 8.10e-02 20 chr5:1792689-1792709 4.46e-04 8_[+5(1.03e-05)]_4 chr17:57910119-57910139 1.00e+00 20 chr2:38635524-38635544 6.39e-01 20 chr2:70362141-70362161 4.47e-01 20 chrX:222861-222881 3.57e-01 20 chr11:102430905-10243092 8.93e-03 20 chr12:121862875-12186289 9.36e-01 20 chr17:25794396-25794416 8.97e-01 20 chr17:43660770-43660790 1.02e-01 20 chr2:64068779-64068799 1.00e+00 20 chr2:62576189-62576209 3.62e-01 20 chr3:49984080-49984100 8.40e-01 20 chr2:242699842-242699862 9.39e-01 20 chr22:37618711-37618731 4.24e-01 20 chr12:6539427-6539447 4.13e-01 20 chr1:156121196-156121216 8.43e-01 20 chr13:99856568-99856588 6.95e-02 8_[+4(4.94e-05)]_4 chr2:231338068-231338088 9.82e-01 20 chr19:16229985-16230005 8.16e-02 20 chr9:36551101-36551121 8.31e-01 20 chr12:121969484-12196950 2.74e-02 20 chr19:2841081-2841101 1.08e-01 20 chr4:38133576-38133596 1.40e-04 2_[+5(1.03e-05)]_10 chr3:81866583-81866603 6.60e-02 20 chr1:28201503-28201523 7.82e-02 20 chr19:10526397-10526417 7.50e-02 20 chr6:30705061-30705081 1.00e+00 20 chr5:116102850-116102870 5.73e-01 20 chr12:90250966-90250986 5.42e-01 20 chr5:42993322-42993342 9.74e-01 20 chr15:91137663-91137683 5.91e-02 11_[+4(1.61e-05)]_1 chr8:28300295-28300315 5.35e-01 20 chr6:27471460-27471480 1.37e-01 20 chr19:10497412-10497432 7.00e-01 20 chr1:249167033-249167053 9.41e-01 20 chr20:46126835-46126855 5.69e-02 20 chr5:64357711-64357731 6.45e-01 20 chr18:9061992-9062012 2.18e-02 20 chr10:63747574-63747594 8.07e-01 20 chr21:45207045-45207065 4.63e-02 6_[+1(1.31e-05)]_6 chr19:3133137-3133157 9.72e-01 20 chr19:45255896-45255916 4.66e-02 2_[+4(3.38e-05)]_10 chr22:24551708-24551728 9.15e-01 20 chr5:131856171-131856191 8.16e-01 20 chr19:5317348-5317368 6.30e-01 20 chr12:25103050-25103070 9.65e-01 20 chr5:77591162-77591182 3.23e-01 20 chr10:103949668-10394968 5.79e-02 20 chr22:40931189-40931209 1.06e-02 20 chr19:16371110-16371130 8.03e-01 20 chr4:48199329-48199349 9.52e-01 20 chr19:19270915-19270935 4.79e-03 3_[+2(7.30e-05)]_9 chr9:136214196-136214216 2.02e-03 11_[+3(1.24e-05)]_1 chr1:59281679-59281699 6.07e-02 20 chr12:123205358-12320537 2.04e-04 2_[+3(1.24e-05)]_10 chr19:40669337-40669357 9.77e-01 20 chr19:40192163-40192183 2.16e-01 20 chr19:8334492-8334512 1.66e-01 20 chr2:20364648-20364668 5.53e-02 5_[+1(3.93e-05)]_7 chr10:104941467-10494148 1.90e-01 20 chr3:57994690-57994710 8.48e-01 20 chr19:7153272-7153292 1.79e-01 20 chr2:71558515-71558535 7.46e-01 20 chr18:60866516-60866536 3.42e-02 20 chr19:6280476-6280496 1.47e-01 11_[+4(8.20e-05)]_1 chr2:121067515-121067535 9.84e-01 20 chr8:101513017-101513037 9.81e-01 20 chr9:33871961-33871981 1.10e-01 20 chr3:171137790-171137810 7.68e-01 20 chr7:5274546-5274566 7.99e-01 20 chr17:29465417-29465437 5.29e-01 20 chr15:66106107-66106127 9.59e-01 20 chr1:6296364-6296384 3.77e-02 [+4(1.61e-05)]_12 chr19:55133641-55133661 1.09e-03 6_[+3(2.65e-05)]_6 chr1:8455649-8455669 1.81e-04 20 chr15:75073940-75073960 8.32e-01 20 chr19:2945396-2945416 9.94e-01 20 chr19:44269222-44269242 3.59e-01 20 chr1:221950692-221950712 6.89e-02 20 chr3:15403666-15403686 7.39e-01 20 chr8:8191564-8191584 2.95e-01 20 chr4:114485784-114485804 2.61e-01 20 chr18:51787815-51787835 5.93e-01 20 chr9:125591263-125591283 7.94e-01 20 chr17:41116770-41116790 7.30e-01 20 chr22:50778875-50778895 9.33e-01 20 chr5:176925000-176925020 9.80e-01 20 chr1:224374033-224374053 2.58e-02 [+2(3.06e-05)]_12 chr16:10986027-10986047 7.61e-01 20 chr15:63766744-63766764 8.84e-01 20 chr5:176839475-176839495 9.55e-01 20 chr22:37680823-37680843 9.93e-01 20 chr5:140893475-140893495 9.77e-02 20 chr22:29563157-29563177 9.99e-01 20 chr17:4467229-4467249 9.95e-01 20 chr5:168006126-168006146 9.45e-01 20 chr3:5179171-5179191 8.64e-01 20 chr8:134511160-134511180 4.77e-01 20 chr1:145396290-145396310 2.18e-02 3_[+3(2.65e-05)]_9 chr1:206288255-206288275 9.98e-01 20 chrX:2182576-2182596 4.15e-01 20 chr19:7409418-7409438 5.18e-02 6_[+4(4.94e-05)]_6 chr8:102636586-102636606 6.27e-01 20 chr7:75292748-75292768 8.00e-01 20 chr11:47545824-47545844 3.88e-01 20 chr2:25449202-25449222 8.72e-01 20 chr19:51897102-51897122 4.75e-01 20 chr12:125260006-12526002 1.51e-04 7_[+3(1.24e-05)]_5 chr9:37411231-37411251 2.51e-01 20 chr4:177045373-177045393 9.93e-01 20 chr6:139695137-139695157 4.60e-01 20 chr3:196139671-196139691 4.96e-02 20 chr19:47103692-47103712 2.96e-01 20 chr21:38361819-38361839 9.59e-01 20 chr3:73000662-73000682 1.95e-01 20 chr15:75387257-75387277 9.97e-01 20 chr21:45206829-45206849 1.14e-02 4_[+1(1.31e-05)]_8 chr20:45827034-45827054 9.99e-01 20 chr16:67096451-67096471 8.79e-01 20 chr7:410938-410958 3.61e-02 6_[+1(1.31e-05)]_6 chr20:61688357-61688377 9.04e-01 20 chr19:2475567-2475587 8.41e-02 20 chr2:242456205-242456225 9.82e-02 20 chr10:125919649-12591966 6.31e-01 20 chr12:58292362-58292382 7.49e-02 8_[+1(2.70e-05)]_4 chr2:70348566-70348586 6.46e-01 20 chr17:16851308-16851328 3.02e-02 20 chr9:137464774-137464794 9.19e-01 20 chr3:133291136-133291156 7.55e-01 20 chr1:160401922-160401942 5.32e-01 20 chr1:1760228-1760248 1.77e-02 7_[+4(6.49e-05)]_5 chr10:12505428-12505448 4.34e-01 20 chr22:34291884-34291904 5.09e-02 20 chr11:327538-327558 8.76e-01 20 chr8:22552251-22552271 8.86e-01 20 chr16:10832492-10832512 6.59e-02 20 chr13:34129153-34129173 5.96e-01 20 chr11:9738188-9738208 6.61e-01 20 chr10:130262782-13026280 9.98e-01 20 chr16:86035704-86035724 1.82e-01 20 chr15:66113817-66113837 2.19e-01 20 chr19:50179368-50179388 5.01e-01 20 chr4:140899504-140899524 3.46e-01 20 chr8:98643365-98643385 1.51e-01 20 chr7:73645146-73645166 7.32e-01 20 chr5:10576453-10576473 5.47e-01 20 chr16:11876845-11876865 9.99e-01 20 chr19:7766448-7766468 3.99e-01 20 chr17:48228843-48228863 2.10e-03 7_[+3(3.93e-05)]_5 chr9:132792971-132792991 4.28e-01 20 chr5:1489226-1489246 6.45e-01 20 chr10:12306121-12306141 8.37e-01 20 chr14:50988745-50988765 5.01e-01 20 chr19:2051639-2051659 5.88e-01 20 chr20:34199473-34199493 9.13e-01 20 chr1:25060139-25060159 9.06e-01 20 chr1:21620723-21620743 5.57e-01 20 chr19:7414297-7414317 9.88e-01 20 chr19:10542065-10542085 7.48e-01 20 chr4:40517828-40517848 3.50e-01 20 chr10:6178002-6178022 8.15e-01 20 chr11:59333404-59333424 9.82e-01 20 chr1:206964955-206964975 8.83e-01 20 chr14:96128099-96128119 3.75e-01 20 chr5:43120680-43120700 8.40e-01 20 chr5:77148830-77148850 6.15e-01 20 chr15:85279541-85279561 6.33e-01 20 chr9:130878342-130878362 2.93e-02 5_[+4(1.61e-05)]_7 chr12:90647345-90647365 8.65e-01 20 chr16:67820621-67820641 5.60e-01 20 chr12:116773803-11677382 1.00e+00 20 chr16:89253285-89253305 3.18e-04 1_[+2(1.55e-05)]_11 chr9:35914344-35914364 9.53e-01 20 chr5:153882889-153882909 6.38e-02 2_[+2(3.06e-05)]_10 chr11:107712203-10771222 8.62e-01 20 chr1:9686891-9686911 3.11e-01 20 chr16:89253508-89253528 3.04e-02 5_[+2(1.55e-05)]_7 chr16:47052591-47052611 9.71e-01 20 chr11:76338395-76338415 1.36e-01 20 chrX:37635923-37635943 3.31e-01 20 chr4:128919192-128919212 1.73e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************