******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CHD1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr18:60984081-60984101 1.0000 20 chr11:65269612-65269632 1.0000 20 chr2:213886459-213886479 1.0000 20 chr7:91764416-91764436 1.0000 20 chr20:60718674-60718694 1.0000 20 chrX:153686515-153686535 1.0000 20 chr1:234742588-234742608 1.0000 20 chr19:49649588-49649608 1.0000 20 chr1:208037385-208037405 1.0000 20 chr7:139045648-139045668 1.0000 20 chr1:178995011-178995031 1.0000 20 chr14:50469470-50469490 1.0000 20 chr14:91976186-91976206 1.0000 20 chr17:36955745-36955765 1.0000 20 chr16:56967670-56967690 1.0000 20 chr1:147013221-147013241 1.0000 20 chr3:98280830-98280850 1.0000 20 chr15:100106870-10010689 1.0000 20 chr16:88522541-88522561 1.0000 20 chr6:26200441-26200461 1.0000 20 chr5:172719571-172719591 1.0000 20 chr6:26158992-26159012 1.0000 20 chr22:37415605-37415625 1.0000 20 chr11:57103134-57103154 1.0000 20 chr10:116852927-11685294 1.0000 20 chr21:26945921-26945941 1.0000 20 chr7:26239514-26239534 1.0000 20 chr7:129590112-129590132 1.0000 20 chr3:69137363-69137383 1.0000 20 chr6:32408467-32408487 1.0000 20 chrX:49022875-49022895 1.0000 20 chr3:98271728-98271748 1.0000 20 chr1:36621528-36621548 1.0000 20 chrX:48596020-48596040 1.0000 20 chr5:32174753-32174773 1.0000 20 chr5:139494359-139494379 1.0000 20 chr12:122239837-12223985 1.0000 20 chr9:98268313-98268333 1.0000 20 chr11:57416758-57416778 1.0000 20 chr5:43602336-43602356 1.0000 20 chr3:160473041-160473061 1.0000 20 chr18:60828817-60828837 1.0000 20 chr5:142776951-142776971 1.0000 20 chr6:160114471-160114491 1.0000 20 chr18:60982296-60982316 1.0000 20 chr17:7743484-7743504 1.0000 20 chr18:52933250-52933270 1.0000 20 chr1:6550697-6550717 1.0000 20 chr6:25041678-25041698 1.0000 20 chr6:32939158-32939178 1.0000 20 chr5:100238581-100238601 1.0000 20 chr19:40791010-40791030 1.0000 20 chr15:79165521-79165541 1.0000 20 chr7:26333552-26333572 1.0000 20 chr8:17013396-17013416 1.0000 20 chr9:117375513-117375533 1.0000 20 chr6:30583205-30583225 1.0000 20 chr3:152016632-152016652 1.0000 20 chr2:70312490-70312510 1.0000 20 chr5:180671263-180671283 1.0000 20 chr15:42263113-42263133 1.0000 20 chr19:55678374-55678394 1.0000 20 chr13:99953854-99953874 1.0000 20 chrX:1601135-1601155 1.0000 20 chr6:35888982-35889002 1.0000 20 chr16:27416002-27416022 1.0000 20 chr16:69599174-69599194 1.0000 20 chr8:107282310-107282330 1.0000 20 chr11:65268646-65268666 1.0000 20 chrX:43513993-43514013 1.0000 20 chr17:67603502-67603522 1.0000 20 chr19:16189430-16189450 1.0000 20 chr22:42321934-42321954 1.0000 20 chr2:43023316-43023336 1.0000 20 chr11:1852041-1852061 1.0000 20 chr2:62425579-62425599 1.0000 20 chr15:93353262-93353282 1.0000 20 chr3:112214704-112214724 1.0000 20 chr20:34328616-34328636 1.0000 20 chr19:42927445-42927465 1.0000 20 chr10:3828146-3828166 1.0000 20 chr6:83073365-83073385 1.0000 20 chr1:165798576-165798596 1.0000 20 chr7:2595243-2595263 1.0000 20 chr6:298178-298198 1.0000 20 chr11:45921550-45921570 1.0000 20 chr6:80254937-80254957 1.0000 20 chr7:151329471-151329491 1.0000 20 chr9:71788948-71788968 1.0000 20 chr4:185736334-185736354 1.0000 20 chrX:47225542-47225562 1.0000 20 chr15:93427903-93427923 1.0000 20 chr11:47290738-47290758 1.0000 20 chr6:291002-291022 1.0000 20 chr6:11382209-11382229 1.0000 20 chr11:66034891-66034911 1.0000 20 chr15:56532797-56532817 1.0000 20 chr14:22977909-22977929 1.0000 20 chr18:60980615-60980635 1.0000 20 chr18:3248585-3248605 1.0000 20 chrX:48755422-48755442 1.0000 20 chr18:2571071-2571091 1.0000 20 chr6:114179121-114179141 1.0000 20 chr11:47291629-47291649 1.0000 20 chr13:33769075-33769095 1.0000 20 chr14:22984624-22984644 1.0000 20 chr12:103835104-10383512 1.0000 20 chr2:68615304-68615324 1.0000 20 chr10:30726339-30726359 1.0000 20 chr4:38133637-38133657 1.0000 20 chr16:31888188-31888208 1.0000 20 chr7:16685621-16685641 1.0000 20 chr3:44040734-44040754 1.0000 20 chr12:125401038-12540105 1.0000 20 chr1:9712101-9712121 1.0000 20 chrX:48754492-48754512 1.0000 20 chrX:47093353-47093373 1.0000 20 chr6:32121757-32121777 1.0000 20 chr1:160677800-160677820 1.0000 20 chr5:150284645-150284665 1.0000 20 chr13:42846538-42846558 1.0000 20 chr12:56224455-56224475 1.0000 20 chr3:133292742-133292762 1.0000 20 chr1:2487869-2487889 1.0000 20 chr8:107669916-107669936 1.0000 20 chrX:13108262-13108282 1.0000 20 chr4:40195566-40195586 1.0000 20 chr1:26438053-26438073 1.0000 20 chr22:46984410-46984430 1.0000 20 chr9:5451597-5451617 1.0000 20 chr1:84464903-84464923 1.0000 20 chr7:135194634-135194654 1.0000 20 chr1:116916814-116916834 1.0000 20 chr6:395627-395647 1.0000 20 chr1:160616396-160616416 1.0000 20 chr12:11885069-11885089 1.0000 20 chr21:44394246-44394266 1.0000 20 chr3:151986428-151986448 1.0000 20 chr14:52118309-52118329 1.0000 20 chr2:214104104-214104124 1.0000 20 chr5:132388026-132388046 1.0000 20 chr20:633951-633971 1.0000 20 chr22:38902082-38902102 1.0000 20 chr6:90060604-90060624 1.0000 20 chr1:167191403-167191423 1.0000 20 chr8:101488330-101488350 1.0000 20 chr10:90640791-90640811 1.0000 20 chr20:5590727-5590747 1.0000 20 chr5:153570098-153570118 1.0000 20 chr2:86790171-86790191 1.0000 20 chr12:92540207-92540227 1.0000 20 chr4:40204272-40204292 1.0000 20 chr9:135285436-135285456 1.0000 20 chr3:15838055-15838075 1.0000 20 chr15:93428128-93428148 1.0000 20 chr11:109843130-10984315 1.0000 20 chr3:48700353-48700373 1.0000 20 chr19:49141682-49141702 1.0000 20 chr9:119449491-119449511 1.0000 20 chr1:192546116-192546136 1.0000 20 chrX:118708430-118708450 1.0000 20 chr19:49653758-49653778 1.0000 20 chr16:53483920-53483940 1.0000 20 chr6:154582959-154582979 1.0000 20 chr6:35231451-35231471 1.0000 20 chr8:6565289-6565309 1.0000 20 chr19:6531817-6531837 1.0000 20 chr17:40439557-40439577 1.0000 20 chr5:90677307-90677327 1.0000 20 chr22:24950721-24950741 1.0000 20 chr7:120038611-120038631 1.0000 20 chr8:67036651-67036671 1.0000 20 chr12:124610188-12461020 1.0000 20 chr7:99724865-99724885 1.0000 20 chrX:47880845-47880865 1.0000 20 chrX:47479339-47479359 1.0000 20 chr9:130538799-130538819 1.0000 20 chr5:65222397-65222417 1.0000 20 chr7:43626925-43626945 1.0000 20 chr11:65265955-65265975 1.0000 20 chr11:68039105-68039125 1.0000 20 chr21:44773188-44773208 1.0000 20 chr6:157008795-157008815 1.0000 20 chr15:75162251-75162271 1.0000 20 chr16:29973118-29973138 1.0000 20 chr9:128004249-128004269 1.0000 20 chr14:22950018-22950038 1.0000 20 chr7:104909664-104909684 1.0000 20 chr3:88199339-88199359 1.0000 20 chr8:135611802-135611822 1.0000 20 chrX:47420817-47420837 1.0000 20 chr3:79068776-79068796 1.0000 20 chr20:2633161-2633181 1.0000 20 chr7:150077035-150077055 1.0000 20 chr19:48894114-48894134 1.0000 20 chr18:52989119-52989139 1.0000 20 chr21:45196276-45196296 1.0000 20 chr18:52988438-52988458 1.0000 20 chr4:77870816-77870836 1.0000 20 chr3:47204989-47205009 1.0000 20 chrX:48858783-48858803 1.0000 20 chrX:53024995-53025015 1.0000 20 chr16:15737470-15737490 1.0000 20 chr3:98251016-98251036 1.0000 20 chr5:106724525-106724545 1.0000 20 chr17:57915607-57915627 1.0000 20 chr17:16880421-16880441 1.0000 20 chr19:2163840-2163860 1.0000 20 chr6:36562771-36562791 1.0000 20 chr4:40631791-40631811 1.0000 20 chr1:110166574-110166594 1.0000 20 chrX:47050136-47050156 1.0000 20 chr19:16696305-16696325 1.0000 20 chr7:43909124-43909144 1.0000 20 chr3:61546540-61546560 1.0000 20 chr18:3449150-3449170 1.0000 20 chrX:19002609-19002629 1.0000 20 chr8:41435956-41435976 1.0000 20 chr5:27472232-27472252 1.0000 20 chr11:34460807-34460827 1.0000 20 chr6:114178656-114178676 1.0000 20 chr20:57464061-57464081 1.0000 20 chr1:200860524-200860544 1.0000 20 chr1:192515147-192515167 1.0000 20 chr17:74262003-74262023 1.0000 20 chr19:47734601-47734621 1.0000 20 chr15:45021552-45021572 1.0000 20 chr2:96809129-96809149 1.0000 20 chr13:60971944-60971964 1.0000 20 chr11:117102526-11710254 1.0000 20 chr12:106696417-10669643 1.0000 20 chr5:173345083-173345103 1.0000 20 chr1:207995685-207995705 1.0000 20 chr11:63606863-63606883 1.0000 20 chr1:111744335-111744355 1.0000 20 chr15:90544405-90544425 1.0000 20 chrX:118827208-118827228 1.0000 20 chr16:788249-788269 1.0000 20 chr4:42630079-42630099 1.0000 20 chr6:153296629-153296649 1.0000 20 chr5:66300168-66300188 1.0000 20 chr1:161016245-161016265 1.0000 20 chr9:34637857-34637877 1.0000 20 chr19:16738467-16738487 1.0000 20 chr14:55596364-55596384 1.0000 20 chr12:125423208-12542322 1.0000 20 chr14:56046686-56046706 1.0000 20 chr5:159901069-159901089 1.0000 20 chr17:29645551-29645571 1.0000 20 chr11:110166494-11016651 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_CHD1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CHD1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.213 C 0.279 G 0.283 T 0.225 Background letter frequencies (from file dataset with add-one prior applied): A 0.213 C 0.279 G 0.283 T 0.225 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BCCCCKGC MEME-1 width = 8 sites = 25 llr = 182 E-value = 4.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCCCCKGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:21:: pos.-specific C 2a988::a probability G 4::::4a: matrix T 4::2:5:: bits 2.2 2.0 1.8 * ** 1.6 ** ** Relative 1.3 *** ** Entropy 1.1 **** ** (10.5 bits) 0.9 **** ** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCCCTGC consensus T AG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCCCCKGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:110166574-110166594 13 2.42e-05 TCTCAGGGTC TCCCCTGC chr21:45196276-45196296 11 2.42e-05 GGCTTCGGAG TCCCCTGC GG chr16:31888188-31888208 9 2.42e-05 GGGGAGTT TCCCCTGC AGGT chrX:153686515-153686535 1 2.42e-05 . TCCCCTgc cgccgcgtcc chr11:45921550-45921570 12 5.47e-05 GTCTCCGGCG GCCCCTGC T chr8:41435956-41435976 6 8.51e-05 GGGGA TCCCCGGC GGGTGGA chr3:48700353-48700373 4 1.23e-04 TCT GCCCCGGC GCCCGAAAC chr11:47291629-47291649 8 1.23e-04 GGCCCCG GCCCCGGC CTCCC chr9:130538799-130538819 1 1.53e-04 . CCCCCTGC CCCCAGCTGT chr1:208037385-208037405 4 1.53e-04 GTT CCCCCTGC TACTTCCAG chr11:63606863-63606883 3 2.18e-04 GG GCCCATGC GGCGGGTGCT chr8:135611802-135611822 5 2.18e-04 caaa gcccatgc tctgacct chr6:32121757-32121777 12 2.18e-04 GCCTGTTTCC TCCCCAGC A chr22:42321934-42321954 8 2.18e-04 GTCTCCC TCCCCAGC CTGAG chr9:71788948-71788968 1 2.75e-04 . cccccggc cAGGAGTCGC chr17:67603502-67603522 4 2.75e-04 TAA TCCTCTGC ATGTCAGAA chr7:129590112-129590132 7 3.29e-04 TAAAGC GCCTCTGC TTTCTT chr6:291002-291022 13 3.52e-04 ctagattttg tcccaggc chr14:50469470-50469490 11 3.52e-04 AGCATTGTGC TCCCAGGC CC chr11:66034891-66034911 6 3.81e-04 GTACC GCCCAGGC CTTAATC chr19:16738467-16738487 8 4.78e-04 CACGGAA GCCTCGGC CTCAC chr3:133292742-133292762 9 4.78e-04 CCGCGCAC GCCTCGGC GACC chr1:2487869-2487889 4 5.07e-04 TGT CCCCCAGC GCCGCTCCA chr22:37415605-37415625 7 5.54e-04 CGCCCG GCACCTGC CAACCT chr6:35888982-35889002 8 8.04e-04 GAGCCTA CCACCTGC TCCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCCCCKGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:110166574-110166594 2.4e-05 12_[+1] chr21:45196276-45196296 2.4e-05 10_[+1]_2 chr16:31888188-31888208 2.4e-05 8_[+1]_4 chrX:153686515-153686535 2.4e-05 [+1]_12 chr11:45921550-45921570 5.5e-05 11_[+1]_1 chr8:41435956-41435976 8.5e-05 5_[+1]_7 chr3:48700353-48700373 0.00012 3_[+1]_9 chr11:47291629-47291649 0.00012 7_[+1]_5 chr9:130538799-130538819 0.00015 [+1]_12 chr1:208037385-208037405 0.00015 3_[+1]_9 chr11:63606863-63606883 0.00022 2_[+1]_10 chr8:135611802-135611822 0.00022 4_[+1]_8 chr6:32121757-32121777 0.00022 11_[+1]_1 chr22:42321934-42321954 0.00022 7_[+1]_5 chr9:71788948-71788968 0.00028 [+1]_12 chr17:67603502-67603522 0.00028 3_[+1]_9 chr7:129590112-129590132 0.00033 6_[+1]_6 chr6:291002-291022 0.00035 12_[+1] chr14:50469470-50469490 0.00035 10_[+1]_2 chr11:66034891-66034911 0.00038 5_[+1]_7 chr19:16738467-16738487 0.00048 7_[+1]_5 chr3:133292742-133292762 0.00048 8_[+1]_4 chr1:2487869-2487889 0.00051 3_[+1]_9 chr22:37415605-37415625 0.00055 6_[+1]_6 chr6:35888982-35889002 0.0008 7_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCCCCKGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCCCCKGC width=8 seqs=25 chr1:110166574-110166594 ( 13) TCCCCTGC 1 chr21:45196276-45196296 ( 11) TCCCCTGC 1 chr16:31888188-31888208 ( 9) TCCCCTGC 1 chrX:153686515-153686535 ( 1) TCCCCTGC 1 chr11:45921550-45921570 ( 12) GCCCCTGC 1 chr8:41435956-41435976 ( 6) TCCCCGGC 1 chr3:48700353-48700373 ( 4) GCCCCGGC 1 chr11:47291629-47291649 ( 8) GCCCCGGC 1 chr9:130538799-130538819 ( 1) CCCCCTGC 1 chr1:208037385-208037405 ( 4) CCCCCTGC 1 chr11:63606863-63606883 ( 3) GCCCATGC 1 chr8:135611802-135611822 ( 5) GCCCATGC 1 chr6:32121757-32121777 ( 12) TCCCCAGC 1 chr22:42321934-42321954 ( 8) TCCCCAGC 1 chr9:71788948-71788968 ( 1) CCCCCGGC 1 chr17:67603502-67603522 ( 4) TCCTCTGC 1 chr7:129590112-129590132 ( 7) GCCTCTGC 1 chr6:291002-291022 ( 13) TCCCAGGC 1 chr14:50469470-50469490 ( 11) TCCCAGGC 1 chr11:66034891-66034911 ( 6) GCCCAGGC 1 chr19:16738467-16738487 ( 8) GCCTCGGC 1 chr3:133292742-133292762 ( 9) GCCTCGGC 1 chr1:2487869-2487889 ( 4) CCCCCAGC 1 chr22:37415605-37415625 ( 7) GCACCTGC 1 chr6:35888982-35889002 ( 8) CCACCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCCCCKGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.15019 E= 4.4e-002 -1129 -48 50 83 -1129 184 -1129 -1129 -141 172 -1129 -1129 -1129 159 -1129 -49 -9 152 -1129 -1129 -82 -1129 35 121 -1129 -1129 182 -1129 -1129 184 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCCCCKGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 4.4e-002 0.000000 0.200000 0.400000 0.400000 0.000000 1.000000 0.000000 0.000000 0.080000 0.920000 0.000000 0.000000 0.000000 0.840000 0.000000 0.160000 0.200000 0.800000 0.000000 0.000000 0.120000 0.000000 0.360000 0.520000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCCCCKGC MEME-1 regular expression -------------------------------------------------------------------------------- [GTC]CCC[CA][TG]GC -------------------------------------------------------------------------------- Time 1.91 secs. ******************************************************************************** ******************************************************************************** MOTIF AAWGAAAA MEME-2 width = 8 sites = 2 llr = 23 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAWGAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa5:aaaa pos.-specific C :::::::: probability G :::a:::: matrix T ::5::::: bits 2.2 ** **** 2.0 ** **** 1.8 ** ***** 1.6 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (16.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGAAAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWGAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:57416758-57416778 3 5.63e-06 GA AAAGAAAA GGGGGGGGAC chr15:93428128-93428148 1 1.16e-05 . AATGAAAA TGTTGAAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWGAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:57416758-57416778 5.6e-06 2_[+2]_10 chr15:93428128-93428148 1.2e-05 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWGAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAWGAAAA width=8 seqs=2 chr11:57416758-57416778 ( 3) AAAGAAAA 1 chr15:93428128-93428148 ( 1) AATGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWGAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.93789 E= 2.0e+003 223 -765 -765 -765 223 -765 -765 -765 123 -765 -765 115 -765 -765 181 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWGAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAWGAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AA[AT]GAAAA -------------------------------------------------------------------------------- Time 2.66 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAAAGRA MEME-3 width = 8 sites = 10 llr = 85 E-value = 9.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAAAGRA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a38a8:48 pos.-specific C ::::::1: probability G :72::a52 matrix T ::::2::: bits 2.2 * * 2.0 * * 1.8 * * * 1.6 * *** Relative 1.3 * **** * Entropy 1.1 ****** * (12.3 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAGGA consensus AG T AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGRA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:68615304-68615324 8 1.74e-05 GGAGACA AGAAAGGA ACAGC chr6:160114471-160114491 3 1.74e-05 GG AGAAAGGA GGCTGCAGGC chr2:213886459-213886479 1 2.30e-05 . AAAAAGAA GAGTAAATAG chrX:43513993-43514013 10 3.84e-05 TAAAACTAA AGAATGAA AGC chr15:90544405-90544425 10 7.86e-05 TGAACCGAA AGAAAGAG AAA chr8:107669916-107669936 2 7.86e-05 C AGGAAGAA TACACCTATG chr1:116916814-116916834 10 1.05e-04 GCTGGTGCC AGAAAGGG TGT chr6:30583205-30583225 5 1.05e-04 GGGG AGGAAGGA CTTGGACC chr6:36562771-36562791 7 1.19e-04 CCCATT AAAATGGA GGCTTA chr1:234742588-234742608 1 1.41e-04 . AAAAAGCA GCGCAAGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGRA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:68615304-68615324 1.7e-05 7_[+3]_5 chr6:160114471-160114491 1.7e-05 2_[+3]_10 chr2:213886459-213886479 2.3e-05 [+3]_12 chrX:43513993-43514013 3.8e-05 9_[+3]_3 chr15:90544405-90544425 7.9e-05 9_[+3]_3 chr8:107669916-107669936 7.9e-05 1_[+3]_11 chr1:116916814-116916834 0.0001 9_[+3]_3 chr6:30583205-30583225 0.0001 4_[+3]_8 chr6:36562771-36562791 0.00012 6_[+3]_6 chr1:234742588-234742608 0.00014 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGRA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAAAGRA width=8 seqs=10 chr2:68615304-68615324 ( 8) AGAAAGGA 1 chr6:160114471-160114491 ( 3) AGAAAGGA 1 chr2:213886459-213886479 ( 1) AAAAAGAA 1 chrX:43513993-43514013 ( 10) AGAATGAA 1 chr15:90544405-90544425 ( 10) AGAAAGAG 1 chr8:107669916-107669936 ( 2) AGGAAGAA 1 chr1:116916814-116916834 ( 10) AGAAAGGG 1 chr6:30583205-30583225 ( 5) AGGAAGGA 1 chr6:36562771-36562791 ( 7) AAAATGGA 1 chr1:234742588-234742608 ( 1) AAAAAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGRA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.2854 E= 9.5e+002 223 -997 -997 -997 50 -997 130 -997 191 -997 -50 -997 223 -997 -997 -997 191 -997 -997 -17 -997 -997 182 -997 91 -148 82 -997 191 -997 -50 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGRA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 9.5e+002 1.000000 0.000000 0.000000 0.000000 0.300000 0.000000 0.700000 0.000000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 0.400000 0.100000 0.500000 0.000000 0.800000 0.000000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGRA MEME-3 regular expression -------------------------------------------------------------------------------- A[GA][AG]A[AT]G[GA][AG] -------------------------------------------------------------------------------- Time 5.06 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACCACA MEME-4 width = 8 sites = 3 llr = 35 E-value = 4.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaa::a:a pos.-specific C :::aa:a: probability G :::::::: matrix T :::::::: bits 2.2 *** * * 2.0 *** * * 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACCACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:29645551-29645571 6 9.52e-06 TGCCA AAACCACA GTTGATA chr19:49141682-49141702 13 9.52e-06 TTCCTGGGCT AAACCACA chr18:52933250-52933270 13 9.52e-06 GTGTAGCCTC AAACCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:29645551-29645571 9.5e-06 5_[+4]_7 chr19:49141682-49141702 9.5e-06 12_[+4] chr18:52933250-52933270 9.5e-06 12_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACCACA width=8 seqs=3 chr17:29645551-29645571 ( 6) AAACCACA 1 chr19:49141682-49141702 ( 13) AAACCACA 1 chr18:52933250-52933270 ( 13) AAACCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 4.0e+002 223 -823 -823 -823 223 -823 -823 -823 223 -823 -823 -823 -823 184 -823 -823 -823 184 -823 -823 223 -823 -823 -823 -823 184 -823 -823 223 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 4.0e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACCACA MEME-4 regular expression -------------------------------------------------------------------------------- AAACCACA -------------------------------------------------------------------------------- Time 7.98 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATAGTA MEME-5 width = 8 sites = 2 llr = 24 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATAGTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa:a::a pos.-specific C :::::::: probability G :::::a:: matrix T :::a::a: bits 2.2 ***** ** 2.0 ***** ** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAATAGTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAGTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:120038611-120038631 2 6.28e-06 A AAATAGTA TTTGATCGAG chr2:213886459-213886479 13 6.28e-06 AAAGAAGAGT AAATAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAGTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:120038611-120038631 6.3e-06 1_[+5]_11 chr2:213886459-213886479 6.3e-06 12_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAGTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATAGTA width=8 seqs=2 chr7:120038611-120038631 ( 2) AAATAGTA 1 chr2:213886459-213886479 ( 13) AAATAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAGTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 1.4e+003 223 -765 -765 -765 223 -765 -765 -765 223 -765 -765 -765 -765 -765 -765 215 223 -765 -765 -765 -765 -765 181 -765 -765 -765 -765 215 223 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAGTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAGTA MEME-5 regular expression -------------------------------------------------------------------------------- AAATAGTA -------------------------------------------------------------------------------- Time 11.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:60984081-60984101 6.10e-01 20 chr11:65269612-65269632 1.33e-02 20 chr2:213886459-213886479 5.98e-08 [+3(2.30e-05)]_4_[+5(6.28e-06)] chr7:91764416-91764436 2.97e-01 20 chr20:60718674-60718694 9.32e-01 20 chrX:153686515-153686535 9.54e-02 [+1(2.42e-05)]_12 chr1:234742588-234742608 1.34e-04 20 chr19:49649588-49649608 9.99e-01 20 chr1:208037385-208037405 2.37e-01 20 chr7:139045648-139045668 2.07e-03 20 chr1:178995011-178995031 9.68e-01 20 chr14:50469470-50469490 2.64e-01 20 chr14:91976186-91976206 8.53e-01 20 chr17:36955745-36955765 8.10e-01 20 chr16:56967670-56967690 7.16e-01 20 chr1:147013221-147013241 5.63e-01 20 chr3:98280830-98280850 1.06e-01 20 chr15:100106870-10010689 8.62e-01 20 chr16:88522541-88522561 1.12e-01 20 chr6:26200441-26200461 1.00e+00 20 chr5:172719571-172719591 7.61e-01 20 chr6:26158992-26159012 6.66e-01 20 chr22:37415605-37415625 3.84e-01 20 chr11:57103134-57103154 1.00e+00 20 chr10:116852927-11685294 8.68e-01 20 chr21:26945921-26945941 4.57e-01 20 chr7:26239514-26239534 4.57e-01 20 chr7:129590112-129590132 8.48e-02 20 chr3:69137363-69137383 5.55e-01 20 chr6:32408467-32408487 2.96e-01 20 chrX:49022875-49022895 9.65e-01 20 chr3:98271728-98271748 2.97e-01 20 chr1:36621528-36621548 9.66e-01 20 chrX:48596020-48596040 1.21e-01 20 chr5:32174753-32174773 3.52e-01 20 chr5:139494359-139494379 9.33e-01 20 chr12:122239837-12223985 5.11e-01 20 chr9:98268313-98268333 9.86e-01 20 chr11:57416758-57416778 1.18e-05 2_[+2(5.63e-06)]_10 chr5:43602336-43602356 3.55e-01 20 chr3:160473041-160473061 1.64e-01 20 chr18:60828817-60828837 8.25e-01 20 chr5:142776951-142776971 5.80e-01 20 chr6:160114471-160114491 1.76e-03 2_[+3(1.74e-05)]_10 chr18:60982296-60982316 5.72e-02 20 chr17:7743484-7743504 9.84e-01 20 chr18:52933250-52933270 2.95e-03 12_[+4(9.52e-06)] chr1:6550697-6550717 5.10e-01 20 chr6:25041678-25041698 8.60e-01 20 chr6:32939158-32939178 1.72e-03 8_[+5(6.55e-05)]_4 chr5:100238581-100238601 1.00e+00 20 chr19:40791010-40791030 9.98e-01 20 chr15:79165521-79165541 7.03e-01 20 chr7:26333552-26333572 5.65e-01 20 chr8:17013396-17013416 9.99e-01 20 chr9:117375513-117375533 9.91e-01 20 chr6:30583205-30583225 5.22e-02 20 chr3:152016632-152016652 9.24e-01 20 chr2:70312490-70312510 9.86e-01 20 chr5:180671263-180671283 3.07e-01 20 chr15:42263113-42263133 7.54e-01 20 chr19:55678374-55678394 4.44e-01 20 chr13:99953854-99953874 6.23e-01 20 chrX:1601135-1601155 3.27e-01 20 chr6:35888982-35889002 2.76e-01 20 chr16:27416002-27416022 3.72e-01 20 chr16:69599174-69599194 3.50e-01 20 chr8:107282310-107282330 8.42e-01 20 chr11:65268646-65268666 1.12e-01 20 chrX:43513993-43514013 6.83e-06 9_[+3(3.84e-05)]_3 chr17:67603502-67603522 6.23e-02 20 chr19:16189430-16189450 2.53e-01 20 chr22:42321934-42321954 1.51e-01 20 chr2:43023316-43023336 5.49e-01 20 chr11:1852041-1852061 8.34e-01 20 chr2:62425579-62425599 8.90e-01 20 chr15:93353262-93353282 8.24e-01 20 chr3:112214704-112214724 6.53e-01 20 chr20:34328616-34328636 5.72e-01 20 chr19:42927445-42927465 8.45e-01 20 chr10:3828146-3828166 8.04e-01 20 chr6:83073365-83073385 9.79e-01 20 chr1:165798576-165798596 2.84e-01 20 chr7:2595243-2595263 9.88e-01 20 chr6:298178-298198 5.33e-01 20 chr11:45921550-45921570 1.45e-01 11_[+1(5.47e-05)]_1 chr6:80254937-80254957 9.37e-01 20 chr7:151329471-151329491 7.40e-01 20 chr9:71788948-71788968 1.80e-01 20 chr4:185736334-185736354 4.19e-01 20 chrX:47225542-47225562 7.12e-01 20 chr15:93427903-93427923 8.75e-01 20 chr11:47290738-47290758 8.68e-01 20 chr6:291002-291022 2.33e-01 20 chr6:11382209-11382229 8.01e-01 20 chr11:66034891-66034911 3.04e-01 20 chr15:56532797-56532817 4.51e-01 20 chr14:22977909-22977929 6.51e-01 20 chr18:60980615-60980635 6.71e-02 20 chr18:3248585-3248605 2.91e-02 20 chrX:48755422-48755442 9.76e-01 20 chr18:2571071-2571091 9.50e-01 20 chr6:114179121-114179141 1.22e-01 20 chr11:47291629-47291649 2.30e-01 20 chr13:33769075-33769095 9.85e-01 20 chr14:22984624-22984644 3.97e-01 20 chr12:103835104-10383512 7.72e-02 20 chr2:68615304-68615324 6.66e-05 7_[+3(1.74e-05)]_5 chr10:30726339-30726359 9.97e-01 20 chr4:38133637-38133657 1.66e-01 20 chr16:31888188-31888208 9.30e-02 8_[+1(2.42e-05)]_4 chr7:16685621-16685641 9.92e-01 20 chr3:44040734-44040754 8.69e-01 20 chr12:125401038-12540105 9.92e-01 20 chr1:9712101-9712121 8.88e-01 20 chrX:48754492-48754512 9.91e-01 20 chrX:47093353-47093373 1.00e+00 20 chr6:32121757-32121777 2.55e-01 20 chr1:160677800-160677820 9.42e-03 20 chr5:150284645-150284665 5.45e-02 20 chr13:42846538-42846558 9.70e-01 20 chr12:56224455-56224475 7.54e-01 20 chr3:133292742-133292762 3.73e-01 20 chr1:2487869-2487889 3.84e-01 20 chr8:107669916-107669936 3.03e-04 1_[+3(7.86e-05)]_11 chrX:13108262-13108282 4.01e-01 20 chr4:40195566-40195586 1.00e+00 20 chr1:26438053-26438073 9.99e-01 20 chr22:46984410-46984430 8.79e-01 20 chr9:5451597-5451617 1.88e-01 20 chr1:84464903-84464923 9.93e-01 20 chr7:135194634-135194654 7.96e-01 20 chr1:116916814-116916834 2.13e-02 20 chr6:395627-395647 9.75e-01 20 chr1:160616396-160616416 2.18e-01 20 chr12:11885069-11885089 4.85e-01 20 chr21:44394246-44394266 8.39e-01 20 chr3:151986428-151986448 9.82e-01 20 chr14:52118309-52118329 9.04e-01 20 chr2:214104104-214104124 5.60e-01 20 chr5:132388026-132388046 8.16e-01 20 chr20:633951-633971 9.16e-01 20 chr22:38902082-38902102 9.82e-01 20 chr6:90060604-90060624 6.56e-01 20 chr1:167191403-167191423 7.95e-01 20 chr8:101488330-101488350 5.10e-01 20 chr10:90640791-90640811 9.95e-01 20 chr20:5590727-5590747 2.27e-01 20 chr5:153570098-153570118 9.95e-01 20 chr2:86790171-86790191 9.61e-01 20 chr12:92540207-92540227 9.83e-01 20 chr4:40204272-40204292 5.18e-01 20 chr9:135285436-135285456 7.02e-01 20 chr3:15838055-15838075 5.64e-02 20 chr15:93428128-93428148 1.41e-03 [+2(1.16e-05)]_12 chr11:109843130-10984315 6.68e-01 20 chr3:48700353-48700373 1.51e-01 20 chr19:49141682-49141702 6.51e-04 12_[+4(9.52e-06)] chr9:119449491-119449511 1.82e-01 20 chr1:192546116-192546136 2.70e-01 20 chrX:118708430-118708450 9.92e-01 20 chr19:49653758-49653778 9.98e-01 20 chr16:53483920-53483940 1.00e+00 20 chr6:154582959-154582979 1.23e-02 20 chr6:35231451-35231471 9.99e-01 20 chr8:6565289-6565309 4.07e-01 20 chr19:6531817-6531837 9.50e-01 20 chr17:40439557-40439577 3.09e-02 20 chr5:90677307-90677327 1.65e-02 20 chr22:24950721-24950741 9.78e-01 20 chr7:120038611-120038631 8.80e-04 1_[+5(6.28e-06)]_11 chr8:67036651-67036671 9.95e-01 20 chr12:124610188-12461020 8.67e-01 20 chr7:99724865-99724885 4.50e-01 20 chrX:47880845-47880865 7.91e-01 20 chrX:47479339-47479359 9.90e-01 20 chr9:130538799-130538819 2.11e-01 20 chr5:65222397-65222417 9.47e-01 20 chr7:43626925-43626945 3.91e-01 20 chr11:65265955-65265975 6.91e-01 20 chr11:68039105-68039125 8.14e-01 20 chr21:44773188-44773208 2.63e-01 20 chr6:157008795-157008815 6.68e-01 20 chr15:75162251-75162271 9.05e-01 20 chr16:29973118-29973138 9.99e-01 20 chr9:128004249-128004269 4.20e-01 20 chr14:22950018-22950038 2.46e-01 20 chr7:104909664-104909684 3.74e-01 20 chr3:88199339-88199359 9.34e-01 20 chr8:135611802-135611822 4.41e-03 20 chrX:47420817-47420837 2.34e-01 20 chr3:79068776-79068796 7.93e-01 20 chr20:2633161-2633181 5.72e-01 20 chr7:150077035-150077055 9.18e-01 20 chr19:48894114-48894134 8.50e-01 20 chr18:52989119-52989139 1.00e+00 20 chr21:45196276-45196296 7.91e-02 10_[+1(2.42e-05)]_2 chr18:52988438-52988458 2.46e-01 20 chr4:77870816-77870836 8.20e-01 20 chr3:47204989-47205009 5.60e-01 20 chrX:48858783-48858803 4.67e-03 20 chrX:53024995-53025015 4.34e-01 20 chr16:15737470-15737490 2.59e-04 20 chr3:98251016-98251036 9.96e-01 20 chr5:106724525-106724545 2.98e-02 20 chr17:57915607-57915627 7.78e-01 20 chr17:16880421-16880441 9.21e-01 20 chr19:2163840-2163860 9.94e-01 20 chr6:36562771-36562791 1.63e-03 20 chr4:40631791-40631811 9.75e-01 20 chr1:110166574-110166594 9.12e-02 12_[+1(2.42e-05)] chrX:47050136-47050156 2.06e-01 20 chr19:16696305-16696325 9.03e-02 20 chr7:43909124-43909144 9.98e-01 20 chr3:61546540-61546560 8.15e-01 20 chr18:3449150-3449170 6.74e-02 20 chrX:19002609-19002629 9.88e-01 20 chr8:41435956-41435976 9.78e-02 5_[+1(8.51e-05)]_7 chr5:27472232-27472252 6.33e-01 20 chr11:34460807-34460827 9.99e-01 20 chr6:114178656-114178676 9.99e-01 20 chr20:57464061-57464081 6.74e-01 20 chr1:200860524-200860544 1.00e+00 20 chr1:192515147-192515167 2.57e-03 20 chr17:74262003-74262023 3.63e-03 20 chr19:47734601-47734621 8.08e-01 20 chr15:45021552-45021572 9.89e-01 20 chr2:96809129-96809149 5.26e-02 20 chr13:60971944-60971964 3.18e-01 20 chr11:117102526-11710254 9.41e-01 20 chr12:106696417-10669643 8.12e-01 20 chr5:173345083-173345103 5.37e-02 20 chr1:207995685-207995705 2.28e-01 20 chr11:63606863-63606883 2.90e-01 20 chr1:111744335-111744355 4.54e-01 20 chr15:90544405-90544425 1.45e-05 9_[+3(7.86e-05)]_3 chrX:118827208-118827228 6.99e-01 20 chr16:788249-788269 8.09e-01 20 chr4:42630079-42630099 8.31e-01 20 chr6:153296629-153296649 5.05e-01 20 chr5:66300168-66300188 4.85e-01 20 chr1:161016245-161016265 4.91e-01 20 chr9:34637857-34637877 5.77e-01 20 chr19:16738467-16738487 8.43e-02 20 chr14:55596364-55596384 1.09e-01 20 chr12:125423208-12542322 1.04e-01 20 chr14:56046686-56046706 9.60e-01 20 chr5:159901069-159901089 9.13e-01 20 chr17:29645551-29645571 1.46e-03 5_[+4(9.52e-06)]_7 chr11:110166494-11016651 9.76e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************