******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CEBPZ.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:59936945-59936965 1.0000 20 chr2:71454328-71454348 1.0000 20 chr19:11457025-11457045 1.0000 20 chr6:84577471-84577491 1.0000 20 chr18:64967891-64967911 1.0000 20 chr1:25757215-25757235 1.0000 20 chr5:68228847-68228867 1.0000 20 chrX:46988665-46988685 1.0000 20 chr21:39601365-39601385 1.0000 20 chr19:45394347-45394367 1.0000 20 chrX:49125714-49125734 1.0000 20 chr21:47604388-47604408 1.0000 20 chr11:107798923-10779894 1.0000 20 chr13:20532758-20532778 1.0000 20 chr1:6845290-6845310 1.0000 20 chr17:39943170-39943190 1.0000 20 chr9:135905924-135905944 1.0000 20 chr17:47866553-47866573 1.0000 20 chr1:113932924-113932944 1.0000 20 chr21:47604599-47604619 1.0000 20 chr19:6372632-6372652 1.0000 20 chr4:52709140-52709160 1.0000 20 chr5:59009122-59009142 1.0000 20 chr15:44487580-44487600 1.0000 20 chr8:145159274-145159294 1.0000 20 chr16:639527-639547 1.0000 20 chr9:34989521-34989541 1.0000 20 chr4:48782488-48782508 1.0000 20 chr16:639296-639316 1.0000 20 chr22:35696180-35696200 1.0000 20 chr17:58635410-58635430 1.0000 20 chr5:32313293-32313313 1.0000 20 chr18:77782862-77782882 1.0000 20 chr19:12405746-12405766 1.0000 20 chr19:13906062-13906082 1.0000 20 chr17:74667928-74667948 1.0000 20 chr2:44395597-44395617 1.0000 20 chr22:37172269-37172289 1.0000 20 chr19:2945044-2945064 1.0000 20 chr19:13388072-13388092 1.0000 20 chr7:138212560-138212580 1.0000 20 chr12:110011444-11001146 1.0000 20 chr4:84299782-84299802 1.0000 20 chr4:468028-468048 1.0000 20 chr9:37465757-37465777 1.0000 20 chr2:6985671-6985691 1.0000 20 chr4:41296640-41296660 1.0000 20 chr19:14228695-14228715 1.0000 20 chr19:7894879-7894899 1.0000 20 chr5:110634892-110634912 1.0000 20 chr20:45035324-45035344 1.0000 20 chr1:38397533-38397553 1.0000 20 chr13:95253996-95254016 1.0000 20 chr10:104261978-10426199 1.0000 20 chr11:67798046-67798066 1.0000 20 chr15:89631523-89631543 1.0000 20 chr18:71959315-71959335 1.0000 20 chr7:2884069-2884089 1.0000 20 chr17:79196859-79196879 1.0000 20 chr19:54641304-54641324 1.0000 20 chr5:43515283-43515303 1.0000 20 chr1:61543723-61543743 1.0000 20 chr15:75744281-75744301 1.0000 20 chr1:150601716-150601736 1.0000 20 chr6:32146045-32146065 1.0000 20 chr6:80247214-80247234 1.0000 20 chr10:101380335-10138035 1.0000 20 chr2:136288874-136288894 1.0000 20 chr19:50379522-50379542 1.0000 20 chr22:39190181-39190201 1.0000 20 chr18:44711199-44711219 1.0000 20 chrX:49047685-49047705 1.0000 20 chr9:35072755-35072775 1.0000 20 chr16:1728160-1728180 1.0000 20 chr17:46125560-46125580 1.0000 20 chr22:19435297-19435317 1.0000 20 chr19:19496477-19496497 1.0000 20 chr7:5622211-5622231 1.0000 20 chr13:20437890-20437910 1.0000 20 chr5:5409465-5409485 1.0000 20 chr19:21182672-21182692 1.0000 20 chr1:227127856-227127876 1.0000 20 chr4:25225544-25225564 1.0000 20 chr19:42580170-42580190 1.0000 20 chr14:78083248-78083268 1.0000 20 chr4:166248707-166248727 1.0000 20 chr4:116936425-116936445 1.0000 20 chr5:117049484-117049504 1.0000 20 chr3:194489992-194490012 1.0000 20 chr19:18303804-18303824 1.0000 20 chr19:14247884-14247904 1.0000 20 chr2:65283391-65283411 1.0000 20 chr12:113658964-11365898 1.0000 20 chr19:36193354-36193374 1.0000 20 chr11:106016316-10601633 1.0000 20 chr1:244211686-244211706 1.0000 20 chr12:6960528-6960548 1.0000 20 chr4:175204407-175204427 1.0000 20 chr2:149011475-149011495 1.0000 20 chr7:100184176-100184196 1.0000 20 chr22:29999363-29999383 1.0000 20 chr1:153895592-153895612 1.0000 20 chr2:73460473-73460493 1.0000 20 chr19:2841376-2841396 1.0000 20 chr1:150669827-150669847 1.0000 20 chr9:139780781-139780801 1.0000 20 chr19:4472109-4472129 1.0000 20 chr5:176853372-176853392 1.0000 20 chr3:179947091-179947111 1.0000 20 chr19:21579828-21579848 1.0000 20 chr16:22386035-22386055 1.0000 20 chrX:57991626-57991646 1.0000 20 chr22:21996427-21996447 1.0000 20 chr17:4870690-4870710 1.0000 20 chr16:89557235-89557255 1.0000 20 chr1:66849074-66849094 1.0000 20 chr11:62599216-62599236 1.0000 20 chr11:4629562-4629582 1.0000 20 chr19:48972427-48972447 1.0000 20 chr19:19174462-19174482 1.0000 20 chr1:110881913-110881933 1.0000 20 chr3:88108245-88108265 1.0000 20 chr19:50180368-50180388 1.0000 20 chr4:331508-331528 1.0000 20 chr1:28562558-28562578 1.0000 20 chr13:41723014-41723034 1.0000 20 chr19:47551945-47551965 1.0000 20 chr7:77427896-77427916 1.0000 20 chr19:4968830-4968850 1.0000 20 chr7:6388763-6388783 1.0000 20 chr17:26368562-26368582 1.0000 20 chr1:33938063-33938083 1.0000 20 chr10:104005145-10400516 1.0000 20 chr1:151763127-151763147 1.0000 20 chr11:75526156-75526176 1.0000 20 chr15:99395652-99395672 1.0000 20 chr19:55973181-55973201 1.0000 20 chr11:62521680-62521700 1.0000 20 chr22:38054426-38054446 1.0000 20 chr17:56595378-56595398 1.0000 20 chr14:23938621-23938641 1.0000 20 chr2:220094384-220094404 1.0000 20 chr12:14956517-14956537 1.0000 20 chr19:36248881-36248901 1.0000 20 chr19:1205593-1205613 1.0000 20 chr1:112290069-112290089 1.0000 20 chr12:68726249-68726269 1.0000 20 chr19:41284008-41284028 1.0000 20 chr9:130829758-130829778 1.0000 20 chr14:73925428-73925448 1.0000 20 chr19:46087755-46087775 1.0000 20 chr7:86984243-86984263 1.0000 20 chr16:103739-103759 1.0000 20 chr5:159546610-159546630 1.0000 20 chr19:42901187-42901207 1.0000 20 chr7:106809330-106809350 1.0000 20 chr19:36505214-36505234 1.0000 20 chr19:9945899-9945919 1.0000 20 chr6:31126256-31126276 1.0000 20 chr7:44887962-44887982 1.0000 20 chr19:23578342-23578362 1.0000 20 chr1:27191663-27191683 1.0000 20 chr10:5932052-5932072 1.0000 20 chr19:14063126-14063146 1.0000 20 chr7:44122231-44122251 1.0000 20 chr19:18315119-18315139 1.0000 20 chr19:11485678-11485698 1.0000 20 chr5:150138241-150138261 1.0000 20 chr20:3869936-3869956 1.0000 20 chr11:75760015-75760035 1.0000 20 chr17:61699504-61699524 1.0000 20 chr14:39525438-39525458 1.0000 20 chr19:11492043-11492063 1.0000 20 chr11:63953503-63953523 1.0000 20 chr19:6737753-6737773 1.0000 20 chr12:8179315-8179335 1.0000 20 chr3:14989981-14990001 1.0000 20 chr2:27008747-27008767 1.0000 20 chr11:68228038-68228058 1.0000 20 chr6:66921053-66921073 1.0000 20 chr1:43312145-43312165 1.0000 20 chr4:124280-124300 1.0000 20 chr1:151254597-151254617 1.0000 20 chr10:58130705-58130725 1.0000 20 chr6:62996180-62996200 1.0000 20 chr3:114866346-114866366 1.0000 20 chr19:23710859-23710879 1.0000 20 chr1:196505050-196505070 1.0000 20 chr2:70142039-70142059 1.0000 20 chr19:2648768-2648788 1.0000 20 chr19:12662413-12662433 1.0000 20 chr2:175375513-175375533 1.0000 20 chr7:23053812-23053832 1.0000 20 chr12:56211780-56211800 1.0000 20 chr1:20988044-20988064 1.0000 20 chr22:40440690-40440710 1.0000 20 chr12:56367651-56367671 1.0000 20 chr17:73043123-73043143 1.0000 20 chr14:23790550-23790570 1.0000 20 chr14:75530798-75530818 1.0000 20 chr19:55851002-55851022 1.0000 20 chr14:104181928-10418194 1.0000 20 chr22:20067663-20067683 1.0000 20 chr19:46498564-46498584 1.0000 20 chr2:74685408-74685428 1.0000 20 chr19:36087443-36087463 1.0000 20 chr14:94492619-94492639 1.0000 20 chr19:39035103-39035123 1.0000 20 chr17:38574314-38574334 1.0000 20 chr11:66056706-66056726 1.0000 20 chr19:39340739-39340759 1.0000 20 chr12:49504712-49504732 1.0000 20 chr14:105219394-10521941 1.0000 20 chr11:67275762-67275782 1.0000 20 chr19:50269850-50269870 1.0000 20 chr9:115480415-115480435 1.0000 20 chr3:98620651-98620671 1.0000 20 chrX:1780542-1780562 1.0000 20 chr19:15529915-15529935 1.0000 20 chr7:150725425-150725445 1.0000 20 chr19:48836312-48836332 1.0000 20 chr12:6961148-6961168 1.0000 20 chr3:195163919-195163939 1.0000 20 chr19:23433268-23433288 1.0000 20 chr11:13299144-13299164 1.0000 20 chr20:44486107-44486127 1.0000 20 chr16:1832770-1832790 1.0000 20 chr16:639847-639867 1.0000 20 chr7:112579969-112579989 1.0000 20 chr3:113415654-113415674 1.0000 20 chr16:77224698-77224718 1.0000 20 chr14:53019481-53019501 1.0000 20 chr5:169768761-169768781 1.0000 20 chr5:148737453-148737473 1.0000 20 chr19:12551929-12551949 1.0000 20 chr19:10828487-10828507 1.0000 20 chr7:33578981-33579001 1.0000 20 chrX:127941488-127941508 1.0000 20 chr11:105893151-10589317 1.0000 20 chr5:153825432-153825452 1.0000 20 chr10:14227965-14227985 1.0000 20 chr17:17875985-17876005 1.0000 20 chr2:97523872-97523892 1.0000 20 chr12:57039906-57039926 1.0000 20 chr7:137687294-137687314 1.0000 20 chr14:21737747-21737767 1.0000 20 chr9:96928442-96928462 1.0000 20 chr17:79980979-79980999 1.0000 20 chr19:3971246-3971266 1.0000 20 chr6:137510200-137510220 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_CEBPZ/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CEBPZ.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.209 C 0.289 G 0.281 T 0.221 Background letter frequencies (from file dataset with add-one prior applied): A 0.209 C 0.289 G 0.281 T 0.221 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VCCAATSR MEME-1 width = 8 sites = 42 llr = 307 E-value = 6.1e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif VCCAATSR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3::a9:15 pos.-specific C 2a9:1:51 probability G 4:::::34 matrix T 1:1::a1: bits 2.3 * * 2.0 * * 1.8 * *** 1.6 * *** Relative 1.4 ***** Entropy 1.1 ***** (10.5 bits) 0.9 ***** 0.7 ***** * 0.5 ***** * 0.2 ******** 0.0 -------- Multilevel GCCAATCA consensus A GG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCAATSR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:8179315-8179335 11 1.37e-05 TACCAACGCA GCCAATCA AC chr19:11492043-11492063 2 1.37e-05 G GCCAATCA GAGAGAGAGT chr19:36193354-36193374 7 1.37e-05 CTTAGG GCCAATCA GAAGCG chr14:75530798-75530818 1 2.39e-05 . ACCAATCA GAGACGGCGC chr12:113658964-11365898 2 2.39e-05 G ACCAATCA GAAGCACCGC chr9:34989521-34989541 11 2.39e-05 TCAGATCCAC ACCAATCA CT chr11:68228038-68228058 7 4.23e-05 TTGCGG GCCAATCG GAATGT chr6:31126256-31126276 5 4.23e-05 GCTG GCCAATCG GGAACGGC chr15:99395652-99395672 12 4.23e-05 CTCCCCGCCG GCCAATCG C chr17:79980979-79980999 5 6.96e-05 CTCA GCCAATGA GCCCGGAG chr3:195163919-195163939 4 6.96e-05 CGA GCCAATGA GCAGCGCGA chr19:1205593-1205613 8 8.33e-05 AGCGCCG ACCAATCG CCGCT chr4:52709140-52709160 10 8.33e-05 GGCCCCAGG ACCAATCG TAT chr12:68726249-68726269 9 9.32e-05 AGGATTTG ACCAATGA GTGG chr19:36248881-36248901 6 1.21e-04 GGTTC TCCAATCA AACACGC chr4:331508-331528 13 1.21e-04 TGGAGCCGTA TCCAATCA chr19:2841376-2841396 3 1.21e-04 TC TCCAATCA GAGTCGCCGA chr19:21182672-21182692 13 1.21e-04 ATGGAAACTG TCCAATCA chr16:639847-639867 7 1.58e-04 AGACAG GCCAATGG CTGAGG chr19:11485678-11485698 5 1.58e-04 ACAA GCCAATGG AGAGGACG chr13:20532758-20532778 1 1.58e-04 . GCCAATGG GCGTGCCCGA chr19:50180368-50180388 3 1.82e-04 TA GCCAATTA CTAGACGGTA chr7:100184176-100184196 3 1.82e-04 AG GCCAATTA GAGCCTCCGA chr17:73043123-73043143 13 2.17e-04 TCGCAGATCA GCCAATAG chr6:32146045-32146065 10 2.17e-04 ACCGTATCA GCCAATAG CCA chr1:110881913-110881933 11 2.27e-04 GGGTTGGGAA CCCAATAA CA chr19:6372632-6372652 5 2.27e-04 GGCG CCCAATAA GCTCAAGA chr5:153825432-153825452 10 3.13e-04 GCGGCGACG CCCAATGG GAC chr19:46498564-46498584 10 3.13e-04 TCTTAGTTA GCCAATTG GAA chr7:106809330-106809350 2 3.13e-04 A CCCAATGG GAAAGGGGAA chr1:151763127-151763147 3 3.24e-04 TG CCCAATTA CCCGGATGGA chr19:55973181-55973201 3 3.56e-04 CA ACCAATCC GCATATGCAG chr11:75526156-75526176 1 3.80e-04 . CCCAATAG CACGCCCCTT chr3:114866346-114866366 12 4.63e-04 CTAAAAGAGG CCCAATCC G chr19:54641304-54641324 4 4.63e-04 TCA CCCAATCC GCGAAAGGG chr5:148737453-148737473 12 5.54e-04 GAGAGATGGA GCTAATGA G chr11:62599216-62599236 9 5.79e-04 AGACTTCA ACCACTCA TTAG chr19:11457025-11457045 12 5.79e-04 CTGGGTATTG ACTAATCG T chr22:19435297-19435317 6 6.23e-04 GAAGA ACTAATGA GCACCGA chr19:45394347-45394367 5 6.23e-04 GAGA ACCAATAC AAAAGGAC chr17:56595378-56595398 1 7.80e-04 . CCCACTCA TTGGTCGAGT chr19:46087755-46087775 5 1.04e-03 ATTG GCCACTGG ACTTTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCAATSR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:8179315-8179335 1.4e-05 10_[+1]_2 chr19:11492043-11492063 1.4e-05 1_[+1]_11 chr19:36193354-36193374 1.4e-05 6_[+1]_6 chr14:75530798-75530818 2.4e-05 [+1]_12 chr12:113658964-11365898 2.4e-05 1_[+1]_11 chr9:34989521-34989541 2.4e-05 10_[+1]_2 chr11:68228038-68228058 4.2e-05 6_[+1]_6 chr6:31126256-31126276 4.2e-05 4_[+1]_8 chr15:99395652-99395672 4.2e-05 11_[+1]_1 chr17:79980979-79980999 7e-05 4_[+1]_8 chr3:195163919-195163939 7e-05 3_[+1]_9 chr19:1205593-1205613 8.3e-05 7_[+1]_5 chr4:52709140-52709160 8.3e-05 9_[+1]_3 chr12:68726249-68726269 9.3e-05 8_[+1]_4 chr19:36248881-36248901 0.00012 5_[+1]_7 chr4:331508-331528 0.00012 12_[+1] chr19:2841376-2841396 0.00012 2_[+1]_10 chr19:21182672-21182692 0.00012 12_[+1] chr16:639847-639867 0.00016 6_[+1]_6 chr19:11485678-11485698 0.00016 4_[+1]_8 chr13:20532758-20532778 0.00016 [+1]_12 chr19:50180368-50180388 0.00018 2_[+1]_10 chr7:100184176-100184196 0.00018 2_[+1]_10 chr17:73043123-73043143 0.00022 12_[+1] chr6:32146045-32146065 0.00022 9_[+1]_3 chr1:110881913-110881933 0.00023 10_[+1]_2 chr19:6372632-6372652 0.00023 4_[+1]_8 chr5:153825432-153825452 0.00031 9_[+1]_3 chr19:46498564-46498584 0.00031 9_[+1]_3 chr7:106809330-106809350 0.00031 1_[+1]_11 chr1:151763127-151763147 0.00032 2_[+1]_10 chr19:55973181-55973201 0.00036 2_[+1]_10 chr11:75526156-75526176 0.00038 [+1]_12 chr3:114866346-114866366 0.00046 11_[+1]_1 chr19:54641304-54641324 0.00046 3_[+1]_9 chr5:148737453-148737473 0.00055 11_[+1]_1 chr11:62599216-62599236 0.00058 8_[+1]_4 chr19:11457025-11457045 0.00058 11_[+1]_1 chr22:19435297-19435317 0.00062 5_[+1]_7 chr19:45394347-45394367 0.00062 4_[+1]_8 chr17:56595378-56595398 0.00078 [+1]_12 chr19:46087755-46087775 0.001 4_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCAATSR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VCCAATSR width=8 seqs=42 chr12:8179315-8179335 ( 11) GCCAATCA 1 chr19:11492043-11492063 ( 2) GCCAATCA 1 chr19:36193354-36193374 ( 7) GCCAATCA 1 chr14:75530798-75530818 ( 1) ACCAATCA 1 chr12:113658964-11365898 ( 2) ACCAATCA 1 chr9:34989521-34989541 ( 11) ACCAATCA 1 chr11:68228038-68228058 ( 7) GCCAATCG 1 chr6:31126256-31126276 ( 5) GCCAATCG 1 chr15:99395652-99395672 ( 12) GCCAATCG 1 chr17:79980979-79980999 ( 5) GCCAATGA 1 chr3:195163919-195163939 ( 4) GCCAATGA 1 chr19:1205593-1205613 ( 8) ACCAATCG 1 chr4:52709140-52709160 ( 10) ACCAATCG 1 chr12:68726249-68726269 ( 9) ACCAATGA 1 chr19:36248881-36248901 ( 6) TCCAATCA 1 chr4:331508-331528 ( 13) TCCAATCA 1 chr19:2841376-2841396 ( 3) TCCAATCA 1 chr19:21182672-21182692 ( 13) TCCAATCA 1 chr16:639847-639867 ( 7) GCCAATGG 1 chr19:11485678-11485698 ( 5) GCCAATGG 1 chr13:20532758-20532778 ( 1) GCCAATGG 1 chr19:50180368-50180388 ( 3) GCCAATTA 1 chr7:100184176-100184196 ( 3) GCCAATTA 1 chr17:73043123-73043143 ( 13) GCCAATAG 1 chr6:32146045-32146065 ( 10) GCCAATAG 1 chr1:110881913-110881933 ( 11) CCCAATAA 1 chr19:6372632-6372652 ( 5) CCCAATAA 1 chr5:153825432-153825452 ( 10) CCCAATGG 1 chr19:46498564-46498584 ( 10) GCCAATTG 1 chr7:106809330-106809350 ( 2) CCCAATGG 1 chr1:151763127-151763147 ( 3) CCCAATTA 1 chr19:55973181-55973201 ( 3) ACCAATCC 1 chr11:75526156-75526176 ( 1) CCCAATAG 1 chr3:114866346-114866366 ( 12) CCCAATCC 1 chr19:54641304-54641324 ( 4) CCCAATCC 1 chr5:148737453-148737473 ( 12) GCTAATGA 1 chr11:62599216-62599236 ( 9) ACCACTCA 1 chr19:11457025-11457045 ( 12) ACTAATCG 1 chr22:19435297-19435317 ( 6) ACTAATGA 1 chr19:45394347-45394367 ( 5) ACCAATAC 1 chr17:56595378-56595398 ( 1) CCCACTCA 1 chr19:46087755-46087775 ( 5) GCCACTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCAATSR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.25079 E= 6.1e-023 32 -43 61 -121 -1204 179 -1204 -1204 -1204 169 -1204 -163 226 -1204 -1204 -1204 215 -201 -1204 -1204 -1204 -1204 -1204 218 -55 79 -10 -121 132 -160 44 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCAATSR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 6.1e-023 0.261905 0.214286 0.428571 0.095238 0.000000 1.000000 0.000000 0.000000 0.000000 0.928571 0.000000 0.071429 1.000000 0.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.142857 0.500000 0.261905 0.095238 0.523810 0.095238 0.380952 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VCCAATSR MEME-1 regular expression -------------------------------------------------------------------------------- [GAC]CCAAT[CG][AG] -------------------------------------------------------------------------------- Time 5.33 secs. ******************************************************************************** ******************************************************************************** MOTIF YYKATTGG MEME-2 width = 8 sites = 26 llr = 204 E-value = 2.0e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYKATTGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::a::11 pos.-specific C 642::::: probability G :14:::99 matrix T 354:aa:: bits 2.3 *** 2.0 *** 1.8 *** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ***** (11.3 bits) 0.9 ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGATTGG consensus TCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYKATTGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:38054426-38054446 12 1.14e-05 TTTGTAGATT CTTATTGG T chr19:23433268-23433288 2 2.58e-05 C CTGATTGG AAAACGTCTA chr19:2945044-2945064 2 2.58e-05 C CTGATTGG AGAATTCTCC chr16:639527-639547 6 2.58e-05 AGCCC CTGATTGG CGAGCGT chr19:14247884-14247904 4 3.45e-05 GAG TTTATTGG CTGGATTGG chr6:80247214-80247234 10 3.45e-05 ACGGCCCTT TTTATTGG CTT chr19:48836312-48836332 2 4.56e-05 T TTGATTGG CTGCTTTGCT chr1:20988044-20988064 2 6.05e-05 C CCTATTGG TGGGAGTGAA chr4:116936425-116936445 9 6.05e-05 ctcttcta cctattgg tctc chr22:20067663-20067683 11 7.94e-05 CTACGCGCCG CCGATTGG CG chr19:48972427-48972447 1 7.94e-05 . CCGATTGG CCCCGCGGGC chr19:18303804-18303824 7 7.94e-05 TTTTTT CCGATTGG TCCGTG chr12:6961148-6961168 7 1.20e-04 GCGCTT CTCATTGG CGTCAG chr12:49504712-49504732 2 1.20e-04 A CTCATTGG CTCCTGGAGA chr19:47551945-47551965 13 1.51e-04 GAATGGCTTA CCCATTGG chr12:57039906-57039926 3 2.17e-04 CA TCCATTGG TCAAAACTGG chr11:13299144-13299164 4 2.17e-04 GCG CGGATTGG CTGGGGGCG chr11:62521680-62521700 6 2.17e-04 TGTCA CGGATTGG TCCGCTC chr22:29999363-29999383 6 2.17e-04 AACTT TCCATTGG TGGAGTC chr16:89557235-89557255 13 2.43e-04 AGCGAGCAAC TGGATTGG chr19:23578342-23578362 11 2.92e-04 CCCAGCGTCC CTGATTAG AT chr19:42580170-42580190 6 2.92e-04 TCCTC ACTATTGG CCCAAGC chr15:75744281-75744301 13 2.92e-04 GAGCCCCAAC ACTATTGG chr3:179947091-179947111 13 3.18e-04 gctgtacctc tttattag chr7:138212560-138212580 11 3.18e-04 acaggaggat tttattga gt chr21:39601365-39601385 11 3.18e-04 acaggaggat tttattga gt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYKATTGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:38054426-38054446 1.1e-05 11_[+2]_1 chr19:23433268-23433288 2.6e-05 1_[+2]_11 chr19:2945044-2945064 2.6e-05 1_[+2]_11 chr16:639527-639547 2.6e-05 5_[+2]_7 chr19:14247884-14247904 3.5e-05 3_[+2]_9 chr6:80247214-80247234 3.5e-05 9_[+2]_3 chr19:48836312-48836332 4.6e-05 1_[+2]_11 chr1:20988044-20988064 6e-05 1_[+2]_11 chr4:116936425-116936445 6e-05 8_[+2]_4 chr22:20067663-20067683 7.9e-05 10_[+2]_2 chr19:48972427-48972447 7.9e-05 [+2]_12 chr19:18303804-18303824 7.9e-05 6_[+2]_6 chr12:6961148-6961168 0.00012 6_[+2]_6 chr12:49504712-49504732 0.00012 1_[+2]_11 chr19:47551945-47551965 0.00015 12_[+2] chr12:57039906-57039926 0.00022 2_[+2]_10 chr11:13299144-13299164 0.00022 3_[+2]_9 chr11:62521680-62521700 0.00022 5_[+2]_7 chr22:29999363-29999383 0.00022 5_[+2]_7 chr16:89557235-89557255 0.00024 12_[+2] chr19:23578342-23578362 0.00029 10_[+2]_2 chr19:42580170-42580190 0.00029 5_[+2]_7 chr15:75744281-75744301 0.00029 12_[+2] chr3:179947091-179947111 0.00032 12_[+2] chr7:138212560-138212580 0.00032 10_[+2]_2 chr21:39601365-39601385 0.00032 10_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYKATTGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYKATTGG width=8 seqs=26 chr22:38054426-38054446 ( 12) CTTATTGG 1 chr19:23433268-23433288 ( 2) CTGATTGG 1 chr19:2945044-2945064 ( 2) CTGATTGG 1 chr16:639527-639547 ( 6) CTGATTGG 1 chr19:14247884-14247904 ( 4) TTTATTGG 1 chr6:80247214-80247234 ( 10) TTTATTGG 1 chr19:48836312-48836332 ( 2) TTGATTGG 1 chr1:20988044-20988064 ( 2) CCTATTGG 1 chr4:116936425-116936445 ( 9) CCTATTGG 1 chr22:20067663-20067683 ( 11) CCGATTGG 1 chr19:48972427-48972447 ( 1) CCGATTGG 1 chr19:18303804-18303824 ( 7) CCGATTGG 1 chr12:6961148-6961168 ( 7) CTCATTGG 1 chr12:49504712-49504732 ( 2) CTCATTGG 1 chr19:47551945-47551965 ( 13) CCCATTGG 1 chr12:57039906-57039926 ( 3) TCCATTGG 1 chr11:13299144-13299164 ( 4) CGGATTGG 1 chr11:62521680-62521700 ( 6) CGGATTGG 1 chr22:29999363-29999383 ( 6) TCCATTGG 1 chr16:89557235-89557255 ( 13) TGGATTGG 1 chr19:23578342-23578362 ( 11) CTGATTAG 1 chr19:42580170-42580190 ( 6) ACTATTGG 1 chr15:75744281-75744301 ( 13) ACTATTGG 1 chr3:179947091-179947111 ( 13) TTTATTAG 1 chr7:138212560-138212580 ( 11) TTTATTGA 1 chr21:39601365-39601385 ( 11) TTTATTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYKATTGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.48829 E= 2.0e-009 -144 100 -1134 65 -1134 41 -129 118 -1134 -59 59 80 226 -1134 -1134 -1134 -1134 -1134 -1134 218 -1134 -1134 -1134 218 -144 -1134 171 -1134 -144 -1134 171 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYKATTGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.0e-009 0.076923 0.576923 0.000000 0.346154 0.000000 0.384615 0.115385 0.500000 0.000000 0.192308 0.423077 0.384615 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.076923 0.000000 0.923077 0.000000 0.076923 0.000000 0.923077 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYKATTGG MEME-2 regular expression -------------------------------------------------------------------------------- [CT][TC][GT]ATTGG -------------------------------------------------------------------------------- Time 8.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGGTTTG MEME-3 width = 8 sites = 8 llr = 80 E-value = 6.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGGTTTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a1:1::: pos.-specific C a::::::: probability G ::9a::1a matrix T ::::9a9: bits 2.3 * * 2.0 * * 1.8 ** * * * 1.6 ** ***** Relative 1.4 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGGTTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTTTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:127941488-127941508 11 1.45e-05 catgactcag caggtttg ga chr5:5409465-5409485 12 1.45e-05 gatgactcag caggtttg t chr5:110634892-110634912 1 1.45e-05 . caggtttg tagtgcaggc chr4:41296640-41296660 5 1.45e-05 tcag caggtttg gagtgcag chr18:64967891-64967911 5 1.45e-05 acag caggtttg gagtgcag chr5:59009122-59009142 9 2.52e-05 tgactcag caagtttg gagt chr7:33578981-33579001 7 3.89e-05 aatgca caggattg tgcacc chr17:4870690-4870710 13 5.73e-05 AGGAATGCGG CAGGTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTTTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:127941488-127941508 1.4e-05 10_[+3]_2 chr5:5409465-5409485 1.4e-05 11_[+3]_1 chr5:110634892-110634912 1.4e-05 [+3]_12 chr4:41296640-41296660 1.4e-05 4_[+3]_8 chr18:64967891-64967911 1.4e-05 4_[+3]_8 chr5:59009122-59009142 2.5e-05 8_[+3]_4 chr7:33578981-33579001 3.9e-05 6_[+3]_6 chr17:4870690-4870710 5.7e-05 12_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTTTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGGTTTG width=8 seqs=8 chrX:127941488-127941508 ( 11) CAGGTTTG 1 chr5:5409465-5409485 ( 12) CAGGTTTG 1 chr5:110634892-110634912 ( 1) CAGGTTTG 1 chr4:41296640-41296660 ( 5) CAGGTTTG 1 chr18:64967891-64967911 ( 5) CAGGTTTG 1 chr5:59009122-59009142 ( 9) CAAGTTTG 1 chr7:33578981-33579001 ( 7) CAGGATTG 1 chr17:4870690-4870710 ( 13) CAGGTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTTTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 6.2e-001 -965 179 -965 -965 225 -965 -965 -965 -74 -965 164 -965 -965 -965 183 -965 -74 -965 -965 199 -965 -965 -965 218 -965 -965 -117 199 -965 -965 183 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTTTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.2e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTTTG MEME-3 regular expression -------------------------------------------------------------------------------- CAGGTTTG -------------------------------------------------------------------------------- Time 11.78 secs. ******************************************************************************** ******************************************************************************** MOTIF TSACTCAG MEME-4 width = 8 sites = 8 llr = 78 E-value = 6.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSACTCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a1::a: pos.-specific C :4:9:a:: probability G 16:::::a matrix T 9:::a::: bits 2.3 * * * 2.0 * * * 1.8 * **** 1.6 * * **** Relative 1.4 * ****** Entropy 1.1 * ****** (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACTCAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACTCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:127941488-127941508 3 1.41e-05 ca tgactcag caggtttgga chr11:75760015-75760035 1 1.41e-05 . tgactcag cgggattggg chr5:5409465-5409485 4 1.41e-05 gga tgactcag caggtttgt chr5:59009122-59009142 1 1.41e-05 . tgactcag caagtttgga chrX:46988665-46988685 12 1.41e-05 CAAGGGCCCC TGACTCAG A chr19:36505214-36505234 10 2.85e-05 TCGGCGCTC TCACTCAG TAT chr9:96928442-96928462 9 6.71e-05 CGCGCACT TCAATCAG ACGG chr5:117049484-117049504 6 8.55e-05 tgagt gcactcag taatgtc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACTCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:127941488-127941508 1.4e-05 2_[+4]_10 chr11:75760015-75760035 1.4e-05 [+4]_12 chr5:5409465-5409485 1.4e-05 3_[+4]_9 chr5:59009122-59009142 1.4e-05 [+4]_12 chrX:46988665-46988685 1.4e-05 11_[+4]_1 chr19:36505214-36505234 2.9e-05 9_[+4]_3 chr9:96928442-96928462 6.7e-05 8_[+4]_4 chr5:117049484-117049504 8.5e-05 5_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACTCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSACTCAG width=8 seqs=8 chrX:127941488-127941508 ( 3) TGACTCAG 1 chr11:75760015-75760035 ( 1) TGACTCAG 1 chr5:5409465-5409485 ( 4) TGACTCAG 1 chr5:59009122-59009142 ( 1) TGACTCAG 1 chrX:46988665-46988685 ( 12) TGACTCAG 1 chr19:36505214-36505234 ( 10) TCACTCAG 1 chr9:96928442-96928462 ( 9) TCAATCAG 1 chr5:117049484-117049504 ( 6) GCACTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACTCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 6.3e+000 -965 -965 -117 199 -965 38 115 -965 225 -965 -965 -965 -74 160 -965 -965 -965 -965 -965 218 -965 179 -965 -965 225 -965 -965 -965 -965 -965 183 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACTCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.3e+000 0.000000 0.000000 0.125000 0.875000 0.000000 0.375000 0.625000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACTCAG MEME-4 regular expression -------------------------------------------------------------------------------- T[GC]ACTCAG -------------------------------------------------------------------------------- Time 12.96 secs. ******************************************************************************** ******************************************************************************** MOTIF ARRGGAGG MEME-5 width = 8 sites = 12 llr = 97 E-value = 3.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARRGGAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a472:a3: pos.-specific C :2::::1: probability G :338a:7a matrix T :1:::::: bits 2.3 * * 2.0 * * 1.8 * ** * 1.6 * ** * Relative 1.4 * *** * Entropy 1.1 * **** * (11.6 bits) 0.9 * **** * 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel AAAGGAGG consensus GG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:6960528-6960548 11 3.67e-05 GCCTCGAGCC AAAGGAAG CT chr7:44887962-44887982 7 5.27e-05 GCGAGC AAGGGAGG CGGGCC chr7:6388763-6388783 12 5.27e-05 AATGAAGACA AAGGGAgg c chr7:2884069-2884089 2 5.27e-05 C AAGGGAGG CGGGCATCCC chr7:138212560-138212580 1 8.11e-05 . acaggagg attttattga chr16:639296-639316 6 8.11e-05 CCCGG AGAGGAAG TTCCGCC chr21:39601365-39601385 1 8.11e-05 . acaggagg attttattga chr3:114866346-114866366 4 8.99e-05 GCT AAAAGAGG CCCAATCCG chr4:25225544-25225564 5 1.36e-04 tgag ataggagg atttattg chr9:135905924-135905944 10 1.60e-04 GGAATACCC AGAAGAGG GCT chr7:106809330-106809350 13 2.17e-04 CCAATGGGAA AGGGGAAG chr19:11485678-11485698 13 2.93e-04 AAGCCAATGG AGAGGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:6960528-6960548 3.7e-05 10_[+5]_2 chr7:44887962-44887982 5.3e-05 6_[+5]_6 chr7:6388763-6388783 5.3e-05 11_[+5]_1 chr7:2884069-2884089 5.3e-05 1_[+5]_11 chr7:138212560-138212580 8.1e-05 [+5]_12 chr16:639296-639316 8.1e-05 5_[+5]_7 chr21:39601365-39601385 8.1e-05 [+5]_12 chr3:114866346-114866366 9e-05 3_[+5]_9 chr4:25225544-25225564 0.00014 4_[+5]_8 chr9:135905924-135905944 0.00016 9_[+5]_3 chr7:106809330-106809350 0.00022 12_[+5] chr19:11485678-11485698 0.00029 12_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARRGGAGG width=8 seqs=12 chr12:6960528-6960548 ( 11) AAAGGAAG 1 chr7:44887962-44887982 ( 7) AAGGGAGG 1 chr7:6388763-6388783 ( 12) AAGGGAGG 1 chr7:2884069-2884089 ( 2) AAGGGAGG 1 chr7:138212560-138212580 ( 1) ACAGGAGG 1 chr16:639296-639316 ( 6) AGAGGAAG 1 chr21:39601365-39601385 ( 1) ACAGGAGG 1 chr3:114866346-114866366 ( 4) AAAAGAGG 1 chr4:25225544-25225564 ( 5) ATAGGAGG 1 chr9:135905924-135905944 ( 10) AGAAGAGG 1 chr7:106809330-106809350 ( 13) AGGGGAAG 1 chr19:11485678-11485698 ( 13) AGAGGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.84639 E= 3.2e+003 225 -1023 -1023 -1023 99 -79 24 -140 167 -1023 24 -1023 -33 -1023 157 -1023 -1023 -1023 183 -1023 225 -1023 -1023 -1023 26 -179 124 -1023 -1023 -1023 183 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.2e+003 1.000000 0.000000 0.000000 0.000000 0.416667 0.166667 0.333333 0.083333 0.666667 0.000000 0.333333 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.083333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGAGG MEME-5 regular expression -------------------------------------------------------------------------------- A[AG][AG]GGA[GA]G -------------------------------------------------------------------------------- Time 13.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:59936945-59936965 9.95e-01 20 chr2:71454328-71454348 7.44e-01 20 chr19:11457025-11457045 1.26e-02 20 chr6:84577471-84577491 5.72e-01 20 chr18:64967891-64967911 1.22e-03 4_[+3(1.45e-05)]_8 chr1:25757215-25757235 8.70e-01 20 chr5:68228847-68228867 9.95e-01 20 chrX:46988665-46988685 7.16e-03 11_[+4(1.41e-05)]_1 chr21:39601365-39601385 2.44e-04 [+5(8.11e-05)]_12 chr19:45394347-45394367 5.30e-02 20 chrX:49125714-49125734 6.98e-01 20 chr21:47604388-47604408 8.55e-01 20 chr11:107798923-10779894 4.66e-01 20 chr13:20532758-20532778 3.27e-02 20 chr1:6845290-6845310 7.24e-01 20 chr17:39943170-39943190 5.11e-01 20 chr9:135905924-135905944 2.27e-02 20 chr17:47866553-47866573 7.35e-02 20 chr1:113932924-113932944 2.87e-01 20 chr21:47604599-47604619 8.09e-01 20 chr19:6372632-6372652 1.82e-02 20 chr4:52709140-52709160 1.85e-02 9_[+1(8.33e-05)]_3 chr5:59009122-59009142 3.04e-05 [+4(1.41e-05)]_[+3(2.52e-05)]_4 chr15:44487580-44487600 2.78e-01 20 chr8:145159274-145159294 8.71e-02 20 chr16:639527-639547 5.14e-03 5_[+2(2.58e-05)]_7 chr9:34989521-34989541 1.54e-02 10_[+1(2.39e-05)]_2 chr4:48782488-48782508 7.93e-01 20 chr16:639296-639316 5.47e-02 5_[+5(8.11e-05)]_7 chr22:35696180-35696200 1.56e-01 20 chr17:58635410-58635430 7.90e-01 20 chr5:32313293-32313313 8.78e-01 20 chr18:77782862-77782882 3.26e-01 20 chr19:12405746-12405766 1.61e-01 20 chr19:13906062-13906082 8.54e-01 20 chr17:74667928-74667948 7.33e-01 20 chr2:44395597-44395617 1.72e-01 20 chr22:37172269-37172289 3.73e-01 20 chr19:2945044-2945064 2.94e-03 1_[+2(2.58e-05)]_11 chr19:13388072-13388092 7.23e-01 20 chr7:138212560-138212580 2.44e-04 [+5(8.11e-05)]_12 chr12:110011444-11001146 8.77e-02 20 chr4:84299782-84299802 9.16e-01 20 chr4:468028-468048 1.24e-01 20 chr9:37465757-37465777 8.36e-01 20 chr2:6985671-6985691 1.09e-02 20 chr4:41296640-41296660 6.33e-03 4_[+3(1.45e-05)]_8 chr19:14228695-14228715 7.87e-01 20 chr19:7894879-7894899 2.65e-01 20 chr5:110634892-110634912 8.67e-03 [+3(1.45e-05)]_12 chr20:45035324-45035344 9.30e-01 20 chr1:38397533-38397553 9.61e-01 20 chr13:95253996-95254016 3.54e-01 20 chr10:104261978-10426199 2.16e-01 20 chr11:67798046-67798066 3.32e-01 20 chr15:89631523-89631543 2.23e-01 20 chr18:71959315-71959335 8.78e-01 20 chr7:2884069-2884089 6.85e-02 1_[+5(5.27e-05)]_11 chr17:79196859-79196879 9.62e-01 20 chr19:54641304-54641324 5.54e-02 20 chr5:43515283-43515303 8.14e-01 20 chr1:61543723-61543743 3.17e-03 20 chr15:75744281-75744301 2.51e-02 20 chr1:150601716-150601736 7.76e-01 20 chr6:32146045-32146065 2.45e-02 20 chr6:80247214-80247234 8.11e-02 9_[+2(3.45e-05)]_3 chr10:101380335-10138035 9.87e-01 20 chr2:136288874-136288894 2.55e-01 20 chr19:50379522-50379542 2.70e-01 20 chr22:39190181-39190201 5.07e-01 20 chr18:44711199-44711219 5.85e-01 20 chrX:49047685-49047705 9.97e-01 20 chr9:35072755-35072775 8.93e-01 20 chr16:1728160-1728180 4.84e-01 20 chr17:46125560-46125580 7.85e-02 20 chr22:19435297-19435317 8.82e-02 20 chr19:19496477-19496497 3.17e-01 20 chr7:5622211-5622231 9.01e-01 20 chr13:20437890-20437910 7.24e-01 20 chr5:5409465-5409485 2.26e-05 3_[+4(1.41e-05)]_[+3(1.45e-05)]_1 chr19:21182672-21182692 4.13e-02 20 chr1:227127856-227127876 6.72e-01 20 chr4:25225544-25225564 6.65e-03 20 chr19:42580170-42580190 1.39e-02 20 chr14:78083248-78083268 3.85e-01 20 chr4:166248707-166248727 8.69e-01 20 chr4:116936425-116936445 2.64e-02 8_[+2(6.05e-05)]_4 chr5:117049484-117049504 4.47e-03 5_[+4(8.55e-05)]_7 chr3:194489992-194490012 5.80e-01 20 chr19:18303804-18303824 1.39e-02 6_[+2(7.94e-05)]_6 chr19:14247884-14247904 3.30e-03 3_[+2(3.45e-05)]_9 chr2:65283391-65283411 2.95e-01 20 chr12:113658964-11365898 5.15e-04 1_[+1(2.39e-05)]_11 chr19:36193354-36193374 2.05e-04 6_[+1(1.37e-05)]_6 chr11:106016316-10601633 6.50e-01 20 chr1:244211686-244211706 9.17e-01 20 chr12:6960528-6960548 1.30e-02 10_[+5(3.67e-05)]_2 chr4:175204407-175204427 3.24e-01 20 chr2:149011475-149011495 1.69e-01 20 chr7:100184176-100184196 4.85e-03 20 chr22:29999363-29999383 2.61e-02 20 chr1:153895592-153895612 2.60e-02 20 chr2:73460473-73460493 5.28e-01 20 chr19:2841376-2841396 2.30e-03 20 chr1:150669827-150669847 5.12e-01 20 chr9:139780781-139780801 6.45e-02 20 chr19:4472109-4472129 8.84e-01 20 chr5:176853372-176853392 3.00e-01 20 chr3:179947091-179947111 1.88e-01 20 chr19:21579828-21579848 9.39e-01 20 chr16:22386035-22386055 3.82e-01 20 chrX:57991626-57991646 9.94e-02 20 chr22:21996427-21996447 7.78e-01 20 chr17:4870690-4870710 7.60e-03 12_[+3(5.73e-05)] chr16:89557235-89557255 4.27e-03 20 chr1:66849074-66849094 5.55e-01 20 chr11:62599216-62599236 4.13e-03 20 chr11:4629562-4629582 5.77e-01 20 chr19:48972427-48972447 1.50e-02 [+2(7.94e-05)]_12 chr19:19174462-19174482 8.42e-01 20 chr1:110881913-110881933 5.41e-02 20 chr3:88108245-88108265 1.23e-01 20 chr19:50180368-50180388 5.29e-03 20 chr4:331508-331528 5.40e-02 20 chr1:28562558-28562578 5.67e-01 20 chr13:41723014-41723034 2.15e-01 20 chr19:47551945-47551965 1.20e-02 20 chr7:77427896-77427916 5.92e-01 20 chr19:4968830-4968850 3.79e-01 20 chr7:6388763-6388783 2.99e-02 11_[+5(5.27e-05)]_1 chr17:26368562-26368582 7.33e-01 20 chr1:33938063-33938083 5.91e-01 20 chr10:104005145-10400516 8.22e-01 20 chr1:151763127-151763147 4.11e-03 20 chr11:75526156-75526176 2.07e-02 20 chr15:99395652-99395672 7.97e-02 11_[+1(4.23e-05)]_1 chr19:55973181-55973201 4.85e-02 20 chr11:62521680-62521700 3.35e-02 20 chr22:38054426-38054446 1.51e-02 11_[+2(1.14e-05)]_1 chr17:56595378-56595398 8.57e-04 20 chr14:23938621-23938641 4.44e-01 20 chr2:220094384-220094404 5.02e-01 20 chr12:14956517-14956537 8.96e-01 20 chr19:36248881-36248901 3.29e-02 20 chr19:1205593-1205613 8.94e-02 7_[+1(8.33e-05)]_5 chr1:112290069-112290089 5.78e-01 20 chr12:68726249-68726269 7.83e-04 8_[+1(9.32e-05)]_4 chr19:41284008-41284028 4.12e-01 20 chr9:130829758-130829778 1.68e-01 20 chr14:73925428-73925448 9.79e-01 20 chr19:46087755-46087775 5.04e-02 20 chr7:86984243-86984263 3.79e-01 20 chr16:103739-103759 4.00e-01 20 chr5:159546610-159546630 4.56e-01 20 chr19:42901187-42901207 7.78e-01 20 chr7:106809330-106809350 6.37e-04 20 chr19:36505214-36505234 2.20e-02 9_[+4(2.85e-05)]_3 chr19:9945899-9945919 9.53e-01 20 chr6:31126256-31126276 5.94e-03 4_[+1(4.23e-05)]_8 chr7:44887962-44887982 3.43e-02 6_[+5(5.27e-05)]_6 chr19:23578342-23578362 4.90e-02 20 chr1:27191663-27191683 3.79e-01 20 chr10:5932052-5932072 6.79e-01 20 chr19:14063126-14063146 4.36e-01 20 chr7:44122231-44122251 6.14e-01 20 chr19:18315119-18315139 6.95e-01 20 chr19:11485678-11485698 3.49e-03 20 chr5:150138241-150138261 8.59e-01 20 chr20:3869936-3869956 2.91e-01 20 chr11:75760015-75760035 2.22e-04 [+4(1.41e-05)]_12 chr17:61699504-61699524 8.93e-01 20 chr14:39525438-39525458 6.35e-01 20 chr19:11492043-11492063 7.24e-04 1_[+1(1.37e-05)]_11 chr11:63953503-63953523 9.48e-01 20 chr19:6737753-6737773 1.42e-02 20 chr12:8179315-8179335 8.99e-03 10_[+1(1.37e-05)]_2 chr3:14989981-14990001 2.52e-01 20 chr2:27008747-27008767 5.91e-01 20 chr11:68228038-68228058 4.63e-03 6_[+1(4.23e-05)]_6 chr6:66921053-66921073 9.93e-01 20 chr1:43312145-43312165 8.59e-01 20 chr4:124280-124300 7.35e-01 20 chr1:151254597-151254617 8.54e-01 20 chr10:58130705-58130725 3.19e-01 20 chr6:62996180-62996200 8.77e-01 20 chr3:114866346-114866366 1.33e-03 3_[+5(8.99e-05)]_9 chr19:23710859-23710879 3.45e-01 20 chr1:196505050-196505070 3.77e-01 20 chr2:70142039-70142059 2.07e-02 20 chr19:2648768-2648788 7.66e-01 20 chr19:12662413-12662433 2.74e-02 20 chr2:175375513-175375533 5.24e-01 20 chr7:23053812-23053832 9.98e-01 20 chr12:56211780-56211800 2.67e-01 20 chr1:20988044-20988064 7.31e-03 1_[+2(6.05e-05)]_11 chr22:40440690-40440710 6.77e-01 20 chr12:56367651-56367671 1.29e-01 20 chr17:73043123-73043143 4.18e-02 20 chr14:23790550-23790570 5.02e-01 20 chr14:75530798-75530818 4.95e-04 [+1(2.39e-05)]_12 chr19:55851002-55851022 1.43e-01 20 chr14:104181928-10418194 9.73e-01 20 chr22:20067663-20067683 7.79e-03 10_[+2(7.94e-05)]_2 chr19:46498564-46498584 3.74e-03 20 chr2:74685408-74685428 6.64e-01 20 chr19:36087443-36087463 1.11e-01 20 chr14:94492619-94492639 5.90e-01 20 chr19:39035103-39035123 4.49e-01 20 chr17:38574314-38574334 6.73e-01 20 chr11:66056706-66056726 8.88e-01 20 chr19:39340739-39340759 8.89e-01 20 chr12:49504712-49504732 3.04e-02 20 chr14:105219394-10521941 2.45e-01 20 chr11:67275762-67275782 6.26e-01 20 chr19:50269850-50269870 4.16e-01 20 chr9:115480415-115480435 9.31e-01 20 chr3:98620651-98620671 8.46e-01 20 chrX:1780542-1780562 9.45e-02 20 chr19:15529915-15529935 3.09e-01 20 chr7:150725425-150725445 9.03e-01 20 chr19:48836312-48836332 1.49e-02 1_[+2(4.56e-05)]_11 chr12:6961148-6961168 1.88e-02 20 chr3:195163919-195163939 6.68e-03 3_[+1(6.96e-05)]_9 chr19:23433268-23433288 3.36e-03 1_[+2(2.58e-05)]_11 chr11:13299144-13299164 2.33e-02 20 chr20:44486107-44486127 3.50e-01 20 chr16:1832770-1832790 6.62e-01 20 chr16:639847-639867 1.23e-02 20 chr7:112579969-112579989 8.00e-01 20 chr3:113415654-113415674 3.56e-01 20 chr16:77224698-77224718 8.24e-01 20 chr14:53019481-53019501 9.97e-01 20 chr5:169768761-169768781 7.83e-01 20 chr5:148737453-148737473 2.74e-02 20 chr19:12551929-12551949 9.49e-01 20 chr19:10828487-10828507 6.89e-01 20 chr7:33578981-33579001 6.13e-03 6_[+3(3.89e-05)]_6 chrX:127941488-127941508 6.28e-06 2_[+4(1.41e-05)]_[+3(1.45e-05)]_2 chr11:105893151-10589317 3.89e-01 20 chr5:153825432-153825452 2.54e-02 20 chr10:14227965-14227985 6.47e-01 20 chr17:17875985-17876005 3.38e-01 20 chr2:97523872-97523892 5.83e-01 20 chr12:57039906-57039926 8.33e-03 20 chr7:137687294-137687314 4.95e-01 20 chr14:21737747-21737767 6.65e-01 20 chr9:96928442-96928462 3.12e-03 8_[+4(6.71e-05)]_4 chr17:79980979-79980999 2.05e-02 4_[+1(6.96e-05)]_8 chr19:3971246-3971266 6.10e-02 20 chr6:137510200-137510220 1.81e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************