******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CBX5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:196246790-196246810 1.0000 20 chr2:213728011-213728031 1.0000 20 chr7:131021822-131021842 1.0000 20 chr2:196995321-196995341 1.0000 20 chr2:64130367-64130387 1.0000 20 chr2:3400072-3400092 1.0000 20 chr7:50286355-50286375 1.0000 20 chr2:48575041-48575061 1.0000 20 chr14:90065087-90065107 1.0000 20 chr10:7491226-7491246 1.0000 20 chr1:66852597-66852617 1.0000 20 chr7:86957794-86957814 1.0000 20 chr8:8293318-8293338 1.0000 20 chr2:44537607-44537627 1.0000 20 chr2:86977575-86977595 1.0000 20 chr3:10287195-10287215 1.0000 20 chr1:243394335-243394355 1.0000 20 chr3:177144933-177144953 1.0000 20 chr4:65096614-65096634 1.0000 20 chr3:150393535-150393555 1.0000 20 chr11:34921352-34921372 1.0000 20 chr7:65730781-65730801 1.0000 20 chr10:45440000-45440020 1.0000 20 chr18:77690232-77690252 1.0000 20 chr18:29554094-29554114 1.0000 20 chr1:154268291-154268311 1.0000 20 chr18:68110358-68110378 1.0000 20 chr2:241471619-241471639 1.0000 20 chr8:52878139-52878159 1.0000 20 chr11:14358565-14358585 1.0000 20 chr4:1740330-1740350 1.0000 20 chr2:99055404-99055424 1.0000 20 chr4:88164759-88164779 1.0000 20 chr1:235833651-235833671 1.0000 20 chr10:85352265-85352285 1.0000 20 chr5:118804175-118804195 1.0000 20 chr7:92418075-92418095 1.0000 20 chr5:173019254-173019274 1.0000 20 chr12:55329417-55329437 1.0000 20 chr8:144751419-144751439 1.0000 20 chr11:74582257-74582277 1.0000 20 chr9:126590980-126591000 1.0000 20 chr5:33906535-33906555 1.0000 20 chr10:90155656-90155676 1.0000 20 chr7:151330501-151330521 1.0000 20 chr9:115046327-115046347 1.0000 20 chr5:154265622-154265642 1.0000 20 chr1:85071068-85071088 1.0000 20 chr3:119758647-119758667 1.0000 20 chr3:122948175-122948195 1.0000 20 chr1:244739760-244739780 1.0000 20 chr1:234821964-234821984 1.0000 20 chr2:41722399-41722419 1.0000 20 chr9:74475057-74475077 1.0000 20 chr3:72274107-72274127 1.0000 20 chr3:113364205-113364225 1.0000 20 chr8:102819228-102819248 1.0000 20 chr7:148564865-148564885 1.0000 20 chr11:61990832-61990852 1.0000 20 chr1:224531473-224531493 1.0000 20 chr6:159326502-159326522 1.0000 20 chr2:174210976-174210996 1.0000 20 chr12:80068523-80068543 1.0000 20 chrX:29578332-29578352 1.0000 20 chr7:154976795-154976815 1.0000 20 chr18:48488539-48488559 1.0000 20 chr2:15003690-15003710 1.0000 20 chr3:157918956-157918976 1.0000 20 chr5:148648693-148648713 1.0000 20 chr13:36505021-36505041 1.0000 20 chr9:90282268-90282288 1.0000 20 chr12:51193919-51193939 1.0000 20 chr7:64869101-64869121 1.0000 20 chr15:34453715-34453735 1.0000 20 chr3:43379916-43379936 1.0000 20 chr4:26408147-26408167 1.0000 20 chr12:1856937-1856957 1.0000 20 chr7:138114473-138114493 1.0000 20 chr1:52682748-52682768 1.0000 20 chr18:67386347-67386367 1.0000 20 chr6:47480801-47480821 1.0000 20 chr18:56313896-56313916 1.0000 20 chr5:154258365-154258385 1.0000 20 chr7:111436912-111436932 1.0000 20 chr8:135684931-135684951 1.0000 20 chr4:164115034-164115054 1.0000 20 chr20:36871445-36871465 1.0000 20 chr15:80212649-80212669 1.0000 20 chr7:149408081-149408101 1.0000 20 chr6:144524194-144524214 1.0000 20 chr12:90681538-90681558 1.0000 20 chr2:26440788-26440808 1.0000 20 chr2:128577829-128577849 1.0000 20 chr15:34446984-34447004 1.0000 20 chr10:31972784-31972804 1.0000 20 chr9:5708589-5708609 1.0000 20 chr6:63362769-63362789 1.0000 20 chr12:106676331-10667635 1.0000 20 chr2:240909640-240909660 1.0000 20 chr9:108497803-108497823 1.0000 20 chr6:118895584-118895604 1.0000 20 chr16:75156021-75156041 1.0000 20 chr4:103780423-103780443 1.0000 20 chr14:70107837-70107857 1.0000 20 chr9:136462890-136462910 1.0000 20 chr10:73705802-73705822 1.0000 20 chr13:22003548-22003568 1.0000 20 chr14:69083165-69083185 1.0000 20 chr1:86843203-86843223 1.0000 20 chr5:157782030-157782050 1.0000 20 chr4:151879325-151879345 1.0000 20 chr9:37565139-37565159 1.0000 20 chr3:136899238-136899258 1.0000 20 chr6:107106512-107106532 1.0000 20 chr2:230999296-230999316 1.0000 20 chr14:45727441-45727461 1.0000 20 chr6:42402194-42402214 1.0000 20 chr14:71545399-71545419 1.0000 20 chr8:61866681-61866701 1.0000 20 chr21:38774773-38774793 1.0000 20 chr11:125423403-12542342 1.0000 20 chr7:138250396-138250416 1.0000 20 chr9:128218340-128218360 1.0000 20 chr17:27255260-27255280 1.0000 20 chr4:164653817-164653837 1.0000 20 chr19:6292222-6292242 1.0000 20 chr7:69694383-69694403 1.0000 20 chr9:119639532-119639552 1.0000 20 chr18:48503637-48503657 1.0000 20 chrX:107137418-107137438 1.0000 20 chr1:75191939-75191959 1.0000 20 chr7:76838987-76839007 1.0000 20 chr2:172280735-172280755 1.0000 20 chr17:41457836-41457856 1.0000 20 chr21:26822467-26822487 1.0000 20 chr1:197694397-197694417 1.0000 20 chr2:43511684-43511704 1.0000 20 chr7:130940218-130940238 1.0000 20 chr19:11717517-11717537 1.0000 20 chr3:5001136-5001156 1.0000 20 chr5:89189534-89189554 1.0000 20 chr2:180790635-180790655 1.0000 20 chr2:174163453-174163473 1.0000 20 chr1:176127354-176127374 1.0000 20 chr14:61425090-61425110 1.0000 20 chr5:171678622-171678642 1.0000 20 chr14:69332456-69332476 1.0000 20 chr7:127835103-127835123 1.0000 20 chr4:170012173-170012193 1.0000 20 chr11:76487704-76487724 1.0000 20 chr5:155221999-155222019 1.0000 20 chr8:9693435-9693455 1.0000 20 chr12:117001239-11700125 1.0000 20 chr1:79113109-79113129 1.0000 20 chr14:67411787-67411807 1.0000 20 chr3:118088949-118088969 1.0000 20 chr6:155675463-155675483 1.0000 20 chr20:49156514-49156534 1.0000 20 chr8:91628882-91628902 1.0000 20 chr19:22130755-22130775 1.0000 20 chr6:135803069-135803089 1.0000 20 chr1:212570222-212570242 1.0000 20 chr6:28294332-28294352 1.0000 20 chr13:43019677-43019697 1.0000 20 chr9:103047557-103047577 1.0000 20 chr21:35538958-35538978 1.0000 20 chr21:38721047-38721067 1.0000 20 chr18:71960411-71960431 1.0000 20 chr8:61517878-61517898 1.0000 20 chr2:25117785-25117805 1.0000 20 chr14:39885464-39885484 1.0000 20 chr1:92868716-92868736 1.0000 20 chr3:98117528-98117548 1.0000 20 chr6:155668286-155668306 1.0000 20 chr6:22173726-22173746 1.0000 20 chr2:135731497-135731517 1.0000 20 chr3:196483790-196483810 1.0000 20 chr18:29358545-29358565 1.0000 20 chr1:55109581-55109601 1.0000 20 chr12:12806968-12806988 1.0000 20 chr16:46620268-46620288 1.0000 20 chr14:71410733-71410753 1.0000 20 chr5:115612828-115612848 1.0000 20 chr18:29240888-29240908 1.0000 20 chr7:66717121-66717141 1.0000 20 chr15:42871516-42871536 1.0000 20 chr16:62712866-62712886 1.0000 20 chr2:103417747-103417767 1.0000 20 chr18:56656775-56656795 1.0000 20 chr14:68568605-68568625 1.0000 20 chr20:726527-726547 1.0000 20 chr3:169619467-169619487 1.0000 20 chr1:91345016-91345036 1.0000 20 chr12:110623972-11062399 1.0000 20 chr2:58485842-58485862 1.0000 20 chr11:60922990-60923010 1.0000 20 chr1:79502942-79502962 1.0000 20 chr2:231653479-231653499 1.0000 20 chr16:72707269-72707289 1.0000 20 chr3:196882107-196882127 1.0000 20 chr10:45991428-45991448 1.0000 20 chr9:123570059-123570079 1.0000 20 chr12:25864073-25864093 1.0000 20 chr10:120992200-12099222 1.0000 20 chr14:93986571-93986591 1.0000 20 chr13:80838426-80838446 1.0000 20 chr10:31978353-31978373 1.0000 20 chr2:95815390-95815410 1.0000 20 chr16:10502848-10502868 1.0000 20 chr1:169997102-169997122 1.0000 20 chr8:143452129-143452149 1.0000 20 chr12:45757883-45757903 1.0000 20 chr2:8699272-8699292 1.0000 20 chr6:56037099-56037119 1.0000 20 chr9:74493423-74493443 1.0000 20 chr19:5535098-5535118 1.0000 20 chr3:189463574-189463594 1.0000 20 chr3:33741000-33741020 1.0000 20 chr12:32197041-32197061 1.0000 20 chr6:152543371-152543391 1.0000 20 chr6:86206055-86206075 1.0000 20 chr3:99206927-99206947 1.0000 20 chr1:53671944-53671964 1.0000 20 chr7:44522872-44522892 1.0000 20 chr13:79970266-79970286 1.0000 20 chr13:96386552-96386572 1.0000 20 chr14:54561686-54561706 1.0000 20 chr3:176231574-176231594 1.0000 20 chr21:34581015-34581035 1.0000 20 chr2:162009015-162009035 1.0000 20 chr1:54400036-54400056 1.0000 20 chr10:71309954-71309974 1.0000 20 chr4:124212679-124212699 1.0000 20 chr10:133609693-13360971 1.0000 20 chr7:152402045-152402065 1.0000 20 chr20:54775696-54775716 1.0000 20 chr6:11493793-11493813 1.0000 20 chr4:18064891-18064911 1.0000 20 chr10:131385345-13138536 1.0000 20 chr9:132275733-132275753 1.0000 20 chr7:120096952-120096972 1.0000 20 chr1:11566176-11566196 1.0000 20 chr7:7270778-7270798 1.0000 20 chr4:6060447-6060467 1.0000 20 chr11:43489690-43489710 1.0000 20 chr10:131289538-13128955 1.0000 20 chr2:121407795-121407815 1.0000 20 chr13:97620494-97620514 1.0000 20 chr11:87929756-87929776 1.0000 20 chr14:67960213-67960233 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_CBX5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CBX5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.281 C 0.221 G 0.208 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.281 C 0.221 G 0.208 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTGCWGAM MEME-1 width = 8 sites = 118 llr = 679 E-value = 1.9e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCWGAM MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3:14:64 pos.-specific C 8::8::22 probability G ::8::a11 matrix T 27216:22 bits 2.3 * 2.0 * 1.8 * 1.6 * Relative 1.4 ** * Entropy 1.1 * ** * (8.3 bits) 0.9 ****** 0.7 ****** 0.5 ****** 0.2 ******** 0.0 -------- Multilevel CTGCTGAA consensus TAT A CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGAM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:103780423-103780443 4 1.40e-05 aac ctgctgaa agtcttata chr4:6060447-6060467 8 2.76e-05 acccttt ctgcagaa aggaa chr7:152402045-152402065 8 2.76e-05 acccttt ctgcagaa agtaa chr10:133609693-13360971 2 2.76e-05 t ctgcagaa ggatgctgcc chr6:152543371-152543391 9 2.76e-05 gcaccctc ctgcagaa gtaa chr16:10502848-10502868 13 2.76e-05 caatttactt ctgcagaa chr12:25864073-25864093 11 2.76e-05 tctttgcttt ctgcagaa ag chr7:66717121-66717141 1 2.76e-05 . ctgcagaa gggtgctgcc chr4:170012173-170012193 4 2.76e-05 ttt ctgcagaa agtaaaatt chr9:119639532-119639552 13 2.76e-05 cagcaccctt ctgcagaa chr6:118895584-118895604 12 2.76e-05 caccaccctt ctgcagaa g chr15:34446984-34447004 5 2.76e-05 actt ctgcagaa gggtgcca chr15:34453715-34453735 8 2.76e-05 tttactt ctgcagaa gggtg chr8:144751419-144751439 5 2.76e-05 actt ctgcagaa gagtgccg chr1:235833651-235833671 11 2.76e-05 cagcaccctt ctgcagaa gt chr18:68110358-68110378 10 2.76e-05 catttattt ctgcagaa ggg chr18:29554094-29554114 7 2.76e-05 gtgctt ctgcagaa gggtgc chr8:9693435-9693455 4 3.87e-05 caa ctgctgac ttctcaatg chr11:76487704-76487724 4 3.87e-05 aat ctgctgac agtcttatt chr1:79502942-79502962 13 7.40e-05 aggcagaagt ctgctgca chr14:71410733-71410753 8 7.40e-05 cagaagt ctgctgca gtggt chr9:126590980-126591000 3 9.76e-05 tc cagcagaa acaatgtaag chr9:123570059-123570079 9 1.23e-04 agataaat ctgctgat agtc chr21:26822467-26822487 2 1.23e-04 t ctgcagca aacttctatc chr1:75191939-75191959 2 1.23e-04 c ctgcagca tacctctgcc chr4:151879325-151879345 4 1.23e-04 ccc ctgcagca cacctctgc chr11:43489690-43489710 1 1.43e-04 . cagctgac ttctcagcag chr14:54561686-54561706 4 1.43e-04 gaa cagctgac ttctcatca chr5:155221999-155222019 4 1.43e-04 tga cagctgac atgctagca chr2:241471619-241471639 13 1.43e-04 aataggctga cagctgac chr7:50286355-50286375 3 1.43e-04 ga cagctgac tttgcaacag chr10:71309954-71309974 7 1.91e-04 caatga cagcagac tactca chr2:8699272-8699292 4 1.91e-04 tgt cagcagac tttcagcag chr9:136462890-136462910 11 1.91e-04 gtaagaatga cagcagac tc chr7:149408081-149408101 9 1.91e-04 tagactga cagcagac tttt chr2:64130367-64130387 6 1.91e-04 aatta cagcagac ttcttgt chr2:99055404-99055424 4 2.72e-04 gtt ttgctgaa tatagaatt chr10:131385345-13138536 11 3.74e-04 gaccagaaat ctgctgtc at chr8:143452129-143452149 10 3.74e-04 ctgactttc cttcagaa atc chr1:154268291-154268311 4 3.74e-04 tct cttcagaa acaatggag chr13:79970266-79970286 5 4.14e-04 atga cagcagat ttctcacc chr3:99206927-99206947 6 4.14e-04 acaaa cagcagat ttttcag chr20:726527-726547 1 4.14e-04 . cagcagat ttctcatgtg chr5:89189534-89189554 13 4.14e-04 ataatactat cagcagat chr1:243394335-243394355 1 4.14e-04 . cagcagat ttcttctcag chr9:132275733-132275753 10 4.80e-04 atgagaagt ctgcagtc ttt chr12:55329417-55329437 12 4.80e-04 tgagattggg cagctgta t chr6:155675463-155675483 13 4.99e-04 tagaaagctt cagcagcc chr4:18064891-18064911 2 6.06e-04 t ctgatgaa aaatcagctg chr1:176127354-176127374 5 6.06e-04 tttt catctgaa acaatgct chr14:67960213-67960233 13 6.67e-04 aggccgcacc cttctgca chr12:32197041-32197061 13 6.67e-04 ggcaaatttt cttctgca chr19:5535098-5535118 8 6.67e-04 TCCAACC TTGCTGCA ACCAA chr3:196483790-196483810 11 6.67e-04 gcagttttac ttgctgca ta chr3:118088949-118088969 2 6.67e-04 t ctgctgtt aatcttgttg chr6:144524194-144524214 11 6.67e-04 gagaagcacc cttctgca ga chr5:118804175-118804195 3 6.67e-04 at ctgctgtt agtctaataa chr1:54400036-54400056 8 7.81e-04 gtaaagt cagctgtc attag chr2:135731497-135731517 8 7.81e-04 gataact ttgctgag tatag chr18:71960411-71960431 4 7.81e-04 caa ctgaagaa tcacaaaag chr14:69332456-69332476 11 7.81e-04 taaaattgcc ttgctgag aa chr17:41457836-41457856 3 7.81e-04 cc ttgctgag aaattctttg chr5:154258365-154258385 13 7.81e-04 taaatttgcc ttgctgag chr12:1856937-1856957 12 7.81e-04 gcttagaagt cagctgct a chr11:14358565-14358585 8 7.81e-04 gatttct catcagaa accat chr3:10287195-10287215 12 7.81e-04 aaaaatggcc ttgctgag a chr3:189463574-189463594 8 8.89e-04 ttgaaag cttcagca ataga chr5:157782030-157782050 5 9.81e-04 cttt cagcagct gtgttgtc chr7:120096952-120096972 6 1.06e-03 gcaaa cttctgcc tggacat chr2:25117785-25117805 7 1.06e-03 tactgt cttctgcc ttgaat chr9:74493423-74493443 8 1.18e-03 acaagat cagatgaa catat chr11:60922990-60923010 13 1.18e-03 gaaagaaaaa tagcagac chr7:76838987-76839007 4 1.18e-03 tgg catcagac ttctgcctg chr1:91345016-91345036 1 1.27e-03 . cagctgtt aatcttatag chr1:224531473-224531493 11 1.27e-03 gatgagaaat cagctgtt aa chr9:115046327-115046347 2 1.27e-03 g ctgcaggg gtggagccct chr10:85352265-85352285 5 1.27e-03 aagt cagctgtt aatcacat chr10:45440000-45440020 7 1.27e-03 aaaagt cagctgtt attctc chr1:212570222-212570242 5 1.43e-03 ctaa tttctgaa cagaaaca chr6:135803069-135803089 3 1.43e-03 tt ctgatgag aagtctgctg chr14:71545399-71545419 8 1.43e-03 attgttt ctgatgag aagtc chr9:108497803-108497823 11 1.43e-03 gtaaccttaa tttctgaa ga chr12:90681538-90681558 4 1.43e-03 ttt ctgatgag aagtcagct chr5:173019254-173019274 8 1.43e-03 ggtggca ctgttgaa cacca chr2:3400072-3400092 4 1.43e-03 ttt ctgatgag aagtctgta chr1:197694397-197694417 9 1.58e-03 cttctcaa tagcagca atgg chr5:154265622-154265642 2 1.58e-03 c cttctgcg gacgtaaatt chr21:35538958-35538978 12 2.13e-03 gccaaaaatg ttgcagga c chr1:55109581-55109601 1 2.38e-03 . cagatgag aaatatgctg chr6:155668286-155668306 9 2.38e-03 catttgct tatctgaa aagg chr12:117001239-11700125 6 2.38e-03 attgt cttctgtg ttgcatt chr6:159326502-159326522 3 2.38e-03 ga cttatgaa ggcacaacag chr8:102819228-102819248 12 2.38e-03 catatttaaa gtgctgaa a chr14:93986571-93986591 8 2.54e-03 ccattgt cttctggc ttgca chr6:22173726-22173746 4 2.54e-03 aat ttgctgtt ggggtggag chr3:43379916-43379936 3 2.54e-03 tg ttgctgtt gagaagtcag chr18:48488539-48488559 4 2.54e-03 tgc cttctggc tttcattgt chr4:1740330-1740350 13 2.54e-03 cagtttttac tttctgca chr3:150393535-150393555 12 2.54e-03 gcctctattg ttgctgtt g chr7:131021822-131021842 3 2.54e-03 tt ctgttgca aaatcagccg chr2:95815390-95815410 6 2.80e-03 CTATA GTGCAGAA CAAGAGA chr2:86977575-86977595 2 2.80e-03 t ctgttgag aaatctgtag chr14:45727441-45727461 11 3.04e-03 agtctttttc tttcagca ct chr8:52878139-52878159 4 3.04e-03 ctc tttcagca cttttacat chr11:61990832-61990852 5 3.40e-03 tgcc ttgctggg aaaattca chr10:131289538-13128955 7 3.67e-03 catcgt cttctggt ttctga chr3:98117528-98117548 7 3.67e-03 aaaatc tatcagac taacag chr7:148564865-148564885 6 3.90e-03 atttg cttatgca aatgagc chr21:38721047-38721067 8 4.23e-03 catagtt ttgttgaa aaatc chr14:61425090-61425110 6 4.23e-03 aaatt catcagtg gtcttat chr2:43511684-43511704 4 4.23e-03 acc cagatgtc caggcagaa chr2:162009015-162009035 10 4.55e-03 ttaatctta ttgatgat ccc chr6:28294332-28294352 2 4.55e-03 G CTGAAGGC CTTCCCACAT chr2:231653479-231653499 4 4.82e-03 agt ctgttgtc attctttga chr6:107106512-107106532 6 4.82e-03 gaagt ctgttgtc attctta chr14:39885464-39885484 13 5.09e-03 ttttcttttc tttcagcg chr7:44522872-44522892 5 5.40e-03 aagc tagaagac aatggaat chr18:56313896-56313916 2 5.40e-03 c catctggt tgtatatgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGAM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:103780423-103780443 1.4e-05 3_[+1]_9 chr4:6060447-6060467 2.8e-05 7_[+1]_5 chr7:152402045-152402065 2.8e-05 7_[+1]_5 chr10:133609693-13360971 2.8e-05 1_[+1]_11 chr6:152543371-152543391 2.8e-05 8_[+1]_4 chr16:10502848-10502868 2.8e-05 12_[+1] chr12:25864073-25864093 2.8e-05 10_[+1]_2 chr7:66717121-66717141 2.8e-05 [+1]_12 chr4:170012173-170012193 2.8e-05 3_[+1]_9 chr9:119639532-119639552 2.8e-05 12_[+1] chr6:118895584-118895604 2.8e-05 11_[+1]_1 chr15:34446984-34447004 2.8e-05 4_[+1]_8 chr15:34453715-34453735 2.8e-05 7_[+1]_5 chr8:144751419-144751439 2.8e-05 4_[+1]_8 chr1:235833651-235833671 2.8e-05 10_[+1]_2 chr18:68110358-68110378 2.8e-05 9_[+1]_3 chr18:29554094-29554114 2.8e-05 6_[+1]_6 chr8:9693435-9693455 3.9e-05 3_[+1]_9 chr11:76487704-76487724 3.9e-05 3_[+1]_9 chr1:79502942-79502962 7.4e-05 12_[+1] chr14:71410733-71410753 7.4e-05 7_[+1]_5 chr9:126590980-126591000 9.8e-05 2_[+1]_10 chr9:123570059-123570079 0.00012 8_[+1]_4 chr21:26822467-26822487 0.00012 1_[+1]_11 chr1:75191939-75191959 0.00012 1_[+1]_11 chr4:151879325-151879345 0.00012 3_[+1]_9 chr11:43489690-43489710 0.00014 [+1]_12 chr14:54561686-54561706 0.00014 3_[+1]_9 chr5:155221999-155222019 0.00014 3_[+1]_9 chr2:241471619-241471639 0.00014 12_[+1] chr7:50286355-50286375 0.00014 2_[+1]_10 chr10:71309954-71309974 0.00019 6_[+1]_6 chr2:8699272-8699292 0.00019 3_[+1]_9 chr9:136462890-136462910 0.00019 10_[+1]_2 chr7:149408081-149408101 0.00019 8_[+1]_4 chr2:64130367-64130387 0.00019 5_[+1]_7 chr2:99055404-99055424 0.00027 3_[+1]_9 chr10:131385345-13138536 0.00037 10_[+1]_2 chr8:143452129-143452149 0.00037 9_[+1]_3 chr1:154268291-154268311 0.00037 3_[+1]_9 chr13:79970266-79970286 0.00041 4_[+1]_8 chr3:99206927-99206947 0.00041 5_[+1]_7 chr20:726527-726547 0.00041 [+1]_12 chr5:89189534-89189554 0.00041 12_[+1] chr1:243394335-243394355 0.00041 [+1]_12 chr9:132275733-132275753 0.00048 9_[+1]_3 chr12:55329417-55329437 0.00048 11_[+1]_1 chr6:155675463-155675483 0.0005 12_[+1] chr4:18064891-18064911 0.00061 1_[+1]_11 chr1:176127354-176127374 0.00061 4_[+1]_8 chr14:67960213-67960233 0.00067 12_[+1] chr12:32197041-32197061 0.00067 12_[+1] chr19:5535098-5535118 0.00067 7_[+1]_5 chr3:196483790-196483810 0.00067 10_[+1]_2 chr3:118088949-118088969 0.00067 1_[+1]_11 chr6:144524194-144524214 0.00067 10_[+1]_2 chr5:118804175-118804195 0.00067 2_[+1]_10 chr1:54400036-54400056 0.00078 7_[+1]_5 chr2:135731497-135731517 0.00078 7_[+1]_5 chr18:71960411-71960431 0.00078 3_[+1]_9 chr14:69332456-69332476 0.00078 10_[+1]_2 chr17:41457836-41457856 0.00078 2_[+1]_10 chr5:154258365-154258385 0.00078 12_[+1] chr12:1856937-1856957 0.00078 11_[+1]_1 chr11:14358565-14358585 0.00078 7_[+1]_5 chr3:10287195-10287215 0.00078 11_[+1]_1 chr3:189463574-189463594 0.00089 7_[+1]_5 chr5:157782030-157782050 0.00098 4_[+1]_8 chr7:120096952-120096972 0.0011 5_[+1]_7 chr2:25117785-25117805 0.0011 6_[+1]_6 chr9:74493423-74493443 0.0012 7_[+1]_5 chr11:60922990-60923010 0.0012 12_[+1] chr7:76838987-76839007 0.0012 3_[+1]_9 chr1:91345016-91345036 0.0013 [+1]_12 chr1:224531473-224531493 0.0013 10_[+1]_2 chr9:115046327-115046347 0.0013 1_[+1]_11 chr10:85352265-85352285 0.0013 4_[+1]_8 chr10:45440000-45440020 0.0013 6_[+1]_6 chr1:212570222-212570242 0.0014 4_[+1]_8 chr6:135803069-135803089 0.0014 2_[+1]_10 chr14:71545399-71545419 0.0014 7_[+1]_5 chr9:108497803-108497823 0.0014 10_[+1]_2 chr12:90681538-90681558 0.0014 3_[+1]_9 chr5:173019254-173019274 0.0014 7_[+1]_5 chr2:3400072-3400092 0.0014 3_[+1]_9 chr1:197694397-197694417 0.0016 8_[+1]_4 chr5:154265622-154265642 0.0016 1_[+1]_11 chr21:35538958-35538978 0.0021 11_[+1]_1 chr1:55109581-55109601 0.0024 [+1]_12 chr6:155668286-155668306 0.0024 8_[+1]_4 chr12:117001239-11700125 0.0024 5_[+1]_7 chr6:159326502-159326522 0.0024 2_[+1]_10 chr8:102819228-102819248 0.0024 11_[+1]_1 chr14:93986571-93986591 0.0025 7_[+1]_5 chr6:22173726-22173746 0.0025 3_[+1]_9 chr3:43379916-43379936 0.0025 2_[+1]_10 chr18:48488539-48488559 0.0025 3_[+1]_9 chr4:1740330-1740350 0.0025 12_[+1] chr3:150393535-150393555 0.0025 11_[+1]_1 chr7:131021822-131021842 0.0025 2_[+1]_10 chr2:95815390-95815410 0.0028 5_[+1]_7 chr2:86977575-86977595 0.0028 1_[+1]_11 chr14:45727441-45727461 0.003 10_[+1]_2 chr8:52878139-52878159 0.003 3_[+1]_9 chr11:61990832-61990852 0.0034 4_[+1]_8 chr10:131289538-13128955 0.0037 6_[+1]_6 chr3:98117528-98117548 0.0037 6_[+1]_6 chr7:148564865-148564885 0.0039 5_[+1]_7 chr21:38721047-38721067 0.0042 7_[+1]_5 chr14:61425090-61425110 0.0042 5_[+1]_7 chr2:43511684-43511704 0.0042 3_[+1]_9 chr2:162009015-162009035 0.0045 9_[+1]_3 chr6:28294332-28294352 0.0045 1_[+1]_11 chr2:231653479-231653499 0.0048 3_[+1]_9 chr6:107106512-107106532 0.0048 5_[+1]_7 chr14:39885464-39885484 0.0051 12_[+1] chr7:44522872-44522892 0.0054 4_[+1]_8 chr18:56313896-56313916 0.0054 1_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGAM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCWGAM width=8 seqs=118 chr4:103780423-103780443 ( 4) CTGCTGAA 1 chr4:6060447-6060467 ( 8) CTGCAGAA 1 chr7:152402045-152402065 ( 8) CTGCAGAA 1 chr10:133609693-13360971 ( 2) CTGCAGAA 1 chr6:152543371-152543391 ( 9) CTGCAGAA 1 chr16:10502848-10502868 ( 13) CTGCAGAA 1 chr12:25864073-25864093 ( 11) CTGCAGAA 1 chr7:66717121-66717141 ( 1) CTGCAGAA 1 chr4:170012173-170012193 ( 4) CTGCAGAA 1 chr9:119639532-119639552 ( 13) CTGCAGAA 1 chr6:118895584-118895604 ( 12) CTGCAGAA 1 chr15:34446984-34447004 ( 5) CTGCAGAA 1 chr15:34453715-34453735 ( 8) CTGCAGAA 1 chr8:144751419-144751439 ( 5) CTGCAGAA 1 chr1:235833651-235833671 ( 11) CTGCAGAA 1 chr18:68110358-68110378 ( 10) CTGCAGAA 1 chr18:29554094-29554114 ( 7) CTGCAGAA 1 chr8:9693435-9693455 ( 4) CTGCTGAC 1 chr11:76487704-76487724 ( 4) CTGCTGAC 1 chr1:79502942-79502962 ( 13) CTGCTGCA 1 chr14:71410733-71410753 ( 8) CTGCTGCA 1 chr9:126590980-126591000 ( 3) CAGCAGAA 1 chr9:123570059-123570079 ( 9) CTGCTGAT 1 chr21:26822467-26822487 ( 2) CTGCAGCA 1 chr1:75191939-75191959 ( 2) CTGCAGCA 1 chr4:151879325-151879345 ( 4) CTGCAGCA 1 chr11:43489690-43489710 ( 1) CAGCTGAC 1 chr14:54561686-54561706 ( 4) CAGCTGAC 1 chr5:155221999-155222019 ( 4) CAGCTGAC 1 chr2:241471619-241471639 ( 13) CAGCTGAC 1 chr7:50286355-50286375 ( 3) CAGCTGAC 1 chr10:71309954-71309974 ( 7) CAGCAGAC 1 chr2:8699272-8699292 ( 4) CAGCAGAC 1 chr9:136462890-136462910 ( 11) CAGCAGAC 1 chr7:149408081-149408101 ( 9) CAGCAGAC 1 chr2:64130367-64130387 ( 6) CAGCAGAC 1 chr2:99055404-99055424 ( 4) TTGCTGAA 1 chr10:131385345-13138536 ( 11) CTGCTGTC 1 chr8:143452129-143452149 ( 10) CTTCAGAA 1 chr1:154268291-154268311 ( 4) CTTCAGAA 1 chr13:79970266-79970286 ( 5) CAGCAGAT 1 chr3:99206927-99206947 ( 6) CAGCAGAT 1 chr20:726527-726547 ( 1) CAGCAGAT 1 chr5:89189534-89189554 ( 13) CAGCAGAT 1 chr1:243394335-243394355 ( 1) CAGCAGAT 1 chr9:132275733-132275753 ( 10) CTGCAGTC 1 chr12:55329417-55329437 ( 12) CAGCTGTA 1 chr6:155675463-155675483 ( 13) CAGCAGCC 1 chr4:18064891-18064911 ( 2) CTGATGAA 1 chr1:176127354-176127374 ( 5) CATCTGAA 1 chr14:67960213-67960233 ( 13) CTTCTGCA 1 chr12:32197041-32197061 ( 13) CTTCTGCA 1 chr19:5535098-5535118 ( 8) TTGCTGCA 1 chr3:196483790-196483810 ( 11) TTGCTGCA 1 chr3:118088949-118088969 ( 2) CTGCTGTT 1 chr6:144524194-144524214 ( 11) CTTCTGCA 1 chr5:118804175-118804195 ( 3) CTGCTGTT 1 chr1:54400036-54400056 ( 8) CAGCTGTC 1 chr2:135731497-135731517 ( 8) TTGCTGAG 1 chr18:71960411-71960431 ( 4) CTGAAGAA 1 chr14:69332456-69332476 ( 11) TTGCTGAG 1 chr17:41457836-41457856 ( 3) TTGCTGAG 1 chr5:154258365-154258385 ( 13) TTGCTGAG 1 chr12:1856937-1856957 ( 12) CAGCTGCT 1 chr11:14358565-14358585 ( 8) CATCAGAA 1 chr3:10287195-10287215 ( 12) TTGCTGAG 1 chr3:189463574-189463594 ( 8) CTTCAGCA 1 chr5:157782030-157782050 ( 5) CAGCAGCT 1 chr7:120096952-120096972 ( 6) CTTCTGCC 1 chr2:25117785-25117805 ( 7) CTTCTGCC 1 chr9:74493423-74493443 ( 8) CAGATGAA 1 chr11:60922990-60923010 ( 13) TAGCAGAC 1 chr7:76838987-76839007 ( 4) CATCAGAC 1 chr1:91345016-91345036 ( 1) CAGCTGTT 1 chr1:224531473-224531493 ( 11) CAGCTGTT 1 chr9:115046327-115046347 ( 2) CTGCAGGG 1 chr10:85352265-85352285 ( 5) CAGCTGTT 1 chr10:45440000-45440020 ( 7) CAGCTGTT 1 chr1:212570222-212570242 ( 5) TTTCTGAA 1 chr6:135803069-135803089 ( 3) CTGATGAG 1 chr14:71545399-71545419 ( 8) CTGATGAG 1 chr9:108497803-108497823 ( 11) TTTCTGAA 1 chr12:90681538-90681558 ( 4) CTGATGAG 1 chr5:173019254-173019274 ( 8) CTGTTGAA 1 chr2:3400072-3400092 ( 4) CTGATGAG 1 chr1:197694397-197694417 ( 9) TAGCAGCA 1 chr5:154265622-154265642 ( 2) CTTCTGCG 1 chr21:35538958-35538978 ( 12) TTGCAGGA 1 chr1:55109581-55109601 ( 1) CAGATGAG 1 chr6:155668286-155668306 ( 9) TATCTGAA 1 chr12:117001239-11700125 ( 6) CTTCTGTG 1 chr6:159326502-159326522 ( 3) CTTATGAA 1 chr8:102819228-102819248 ( 12) GTGCTGAA 1 chr14:93986571-93986591 ( 8) CTTCTGGC 1 chr6:22173726-22173746 ( 4) TTGCTGTT 1 chr3:43379916-43379936 ( 3) TTGCTGTT 1 chr18:48488539-48488559 ( 4) CTTCTGGC 1 chr4:1740330-1740350 ( 13) TTTCTGCA 1 chr3:150393535-150393555 ( 12) TTGCTGTT 1 chr7:131021822-131021842 ( 3) CTGTTGCA 1 chr2:95815390-95815410 ( 6) GTGCAGAA 1 chr2:86977575-86977595 ( 2) CTGTTGAG 1 chr14:45727441-45727461 ( 11) TTTCAGCA 1 chr8:52878139-52878159 ( 4) TTTCAGCA 1 chr11:61990832-61990852 ( 5) TTGCTGGG 1 chr10:131289538-13128955 ( 7) CTTCTGGT 1 chr3:98117528-98117548 ( 7) TATCAGAC 1 chr7:148564865-148564885 ( 6) CTTATGCA 1 chr21:38721047-38721067 ( 8) TTGTTGAA 1 chr14:61425090-61425110 ( 6) CATCAGTG 1 chr2:43511684-43511704 ( 4) CAGATGTC 1 chr2:162009015-162009035 ( 10) TTGATGAT 1 chr6:28294332-28294352 ( 2) CTGAAGGC 1 chr2:231653479-231653499 ( 4) CTGTTGTC 1 chr6:107106512-107106532 ( 6) CTGTTGTC 1 chr14:39885464-39885484 ( 13) TTTCAGCG 1 chr7:44522872-44522892 ( 5) TAGAAGAC 1 chr18:56313896-56313916 ( 2) CATCTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGAM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.02363 E= 1.9e-067 -1353 178 -361 -40 20 -1353 -1353 122 -1353 -1353 188 -29 -124 191 -1353 -251 62 -1353 -1353 97 -1353 -1353 227 -1353 104 -12 -162 -93 68 10 -53 -78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGAM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 1.9e-067 0.000000 0.762712 0.016949 0.220339 0.322034 0.000000 0.000000 0.677966 0.000000 0.000000 0.762712 0.237288 0.118644 0.830508 0.000000 0.050847 0.432203 0.000000 0.000000 0.567797 0.000000 0.000000 1.000000 0.000000 0.576271 0.203390 0.067797 0.152542 0.449153 0.237288 0.144068 0.169492 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGAM MEME-1 regular expression -------------------------------------------------------------------------------- [CT][TA][GT]C[TA]G[AC][AC] -------------------------------------------------------------------------------- Time 1.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCAGCA MEME-2 width = 8 sites = 12 llr = 108 E-value = 3.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCAGCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a:2a pos.-specific C 29:a:18: probability G :::::7:: matrix T 81a::3:: bits 2.3 * 2.0 * 1.8 **** * 1.6 **** * Relative 1.4 **** ** Entropy 1.1 ***** ** (13.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCAGCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:43489690-43489710 10 1.49e-05 cagctgact tctcagca gga chr16:62712866-62712886 11 1.49e-05 acaaaggatt tctcagca ag chr1:52682748-52682768 2 1.49e-05 t tctcagca aggcactttt chr7:138114473-138114493 1 1.49e-05 . tctcagca aggcaaattt chr14:54561686-54561706 13 3.57e-05 acagctgact tctcatca chr1:169997102-169997122 1 3.57e-05 . tctcatca aaaacaatgc chr7:92418075-92418095 13 3.57e-05 aacaactact tctcatca chr4:124212679-124212699 5 4.71e-05 attc cctcagca tttgcttg chr1:243394335-243394355 13 6.60e-05 gcagatttct tctcagaa chr7:65730781-65730801 8 8.19e-05 gcagact tctcacca gtaac chr2:8699272-8699292 12 1.17e-04 gtcagcagac tttcagca g chr10:45991428-45991448 8 1.58e-04 gacttat cctcagaa accag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:43489690-43489710 1.5e-05 9_[+2]_3 chr16:62712866-62712886 1.5e-05 10_[+2]_2 chr1:52682748-52682768 1.5e-05 1_[+2]_11 chr7:138114473-138114493 1.5e-05 [+2]_12 chr14:54561686-54561706 3.6e-05 12_[+2] chr1:169997102-169997122 3.6e-05 [+2]_12 chr7:92418075-92418095 3.6e-05 12_[+2] chr4:124212679-124212699 4.7e-05 4_[+2]_8 chr1:243394335-243394355 6.6e-05 12_[+2] chr7:65730781-65730801 8.2e-05 7_[+2]_5 chr2:8699272-8699292 0.00012 11_[+2]_1 chr10:45991428-45991448 0.00016 7_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCAGCA width=8 seqs=12 chr11:43489690-43489710 ( 10) TCTCAGCA 1 chr16:62712866-62712886 ( 11) TCTCAGCA 1 chr1:52682748-52682768 ( 2) TCTCAGCA 1 chr7:138114473-138114493 ( 1) TCTCAGCA 1 chr14:54561686-54561706 ( 13) TCTCATCA 1 chr1:169997102-169997122 ( 1) TCTCATCA 1 chr7:92418075-92418095 ( 13) TCTCATCA 1 chr4:124212679-124212699 ( 5) CCTCAGCA 1 chr1:243394335-243394355 ( 13) TCTCAGAA 1 chr7:65730781-65730801 ( 8) TCTCACCA 1 chr2:8699272-8699292 ( 12) TTTCAGCA 1 chr10:45991428-45991448 ( 8) CCTCAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 3.1e-001 -1023 -41 -1023 152 -1023 205 -1023 -180 -1023 -1023 -1023 178 -1023 217 -1023 -1023 183 -1023 -1023 -1023 -1023 -141 168 -21 -75 191 -1023 -1023 183 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.1e-001 0.000000 0.166667 0.000000 0.833333 0.000000 0.916667 0.000000 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.666667 0.250000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGCA MEME-2 regular expression -------------------------------------------------------------------------------- TCTCA[GT]CA -------------------------------------------------------------------------------- Time 4.72 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGTCAGY MEME-3 width = 8 sites = 9 llr = 84 E-value = 9.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGTCAGY MEME-3 Description -------------------------------------------------------------------------------- Simplified A aa2::8:: pos.-specific C ::::a::7 probability G ::8:::a: matrix T :::a:2:3 bits 2.3 * * 2.0 * * 1.8 ** ** * 1.6 ** ** * Relative 1.4 ***** * Entropy 1.1 ******** (13.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGTCAGC consensus A T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTCAGY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:121407795-121407815 5 1.36e-05 taac aagtcagc cataactc chr12:90681538-90681558 12 1.36e-05 ttctgatgag aagtcagc t chr7:154976795-154976815 7 1.36e-05 aatgag aagtcagc aatcgt chr3:136899238-136899258 2 3.14e-05 g aagtcagt tatccatcta chr8:8293318-8293338 10 3.14e-05 gctgtaaag aagtcagt tgc chr6:135803069-135803089 11 4.55e-05 ttctgatgag aagtctgc tg chr4:18064891-18064911 10 6.38e-05 tctgatgaa aaatcagc tgt chr7:131021822-131021842 11 6.38e-05 ttctgttgca aaatcagc cg chr2:3400072-3400092 12 8.23e-05 ttctgatgag aagtctgt a -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTCAGY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:121407795-121407815 1.4e-05 4_[+3]_8 chr12:90681538-90681558 1.4e-05 11_[+3]_1 chr7:154976795-154976815 1.4e-05 6_[+3]_6 chr3:136899238-136899258 3.1e-05 1_[+3]_11 chr8:8293318-8293338 3.1e-05 9_[+3]_3 chr6:135803069-135803089 4.5e-05 10_[+3]_2 chr4:18064891-18064911 6.4e-05 9_[+3]_3 chr7:131021822-131021842 6.4e-05 10_[+3]_2 chr2:3400072-3400092 8.2e-05 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTCAGY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGTCAGY width=8 seqs=9 chr2:121407795-121407815 ( 5) AAGTCAGC 1 chr12:90681538-90681558 ( 12) AAGTCAGC 1 chr7:154976795-154976815 ( 7) AAGTCAGC 1 chr3:136899238-136899258 ( 2) AAGTCAGT 1 chr8:8293318-8293338 ( 10) AAGTCAGT 1 chr6:135803069-135803089 ( 11) AAGTCTGC 1 chr4:18064891-18064911 ( 10) AAATCAGC 1 chr7:131021822-131021842 ( 11) AAATCAGC 1 chr2:3400072-3400092 ( 12) AAGTCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTCAGY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.62696 E= 9.0e+000 183 -982 -982 -982 183 -982 -982 -982 -34 -982 190 -982 -982 -982 -982 178 -982 217 -982 -982 147 -982 -982 -38 -982 -982 227 -982 -982 159 -982 20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTCAGY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 9.0e+000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.000000 0.000000 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTCAGY MEME-3 regular expression -------------------------------------------------------------------------------- AA[GA]TC[AT]G[CT] -------------------------------------------------------------------------------- Time 7.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCARAAR MEME-4 width = 8 sites = 8 llr = 75 E-value = 7.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCARAAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a4aa5 pos.-specific C :8a::::: probability G a3::6::5 matrix T :::::::: bits 2.3 * * 2.0 * * 1.8 * ** ** 1.6 * ** ** Relative 1.4 **** ** Entropy 1.1 ******** (13.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCAGAAA consensus G A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARAAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:31978353-31978373 13 9.75e-06 aatcatggat gccagaag chr1:66852597-66852617 13 9.75e-06 cagattgcct gccagaag chr4:88164759-88164779 2 2.29e-05 a gccagaaa gcagtgggat chr13:80838426-80838446 13 4.53e-05 ttacaatcat ggcagaag chr1:79502942-79502962 4 4.53e-05 tca ggcagaag tctgctgca chr3:33741000-33741020 4 6.31e-05 ccg gccaaaaa gtatgagag chr21:35538958-35538978 2 6.31e-05 c gccaaaaa tgttgcagga chr14:67411787-67411807 9 6.31e-05 tgttgggc gccaaaaa TGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARAAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:31978353-31978373 9.8e-06 12_[+4] chr1:66852597-66852617 9.8e-06 12_[+4] chr4:88164759-88164779 2.3e-05 1_[+4]_11 chr13:80838426-80838446 4.5e-05 12_[+4] chr1:79502942-79502962 4.5e-05 3_[+4]_9 chr3:33741000-33741020 6.3e-05 3_[+4]_9 chr21:35538958-35538978 6.3e-05 1_[+4]_11 chr14:67411787-67411807 6.3e-05 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARAAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCARAAR width=8 seqs=8 chr10:31978353-31978373 ( 13) GCCAGAAG 1 chr1:66852597-66852617 ( 13) GCCAGAAG 1 chr4:88164759-88164779 ( 2) GCCAGAAA 1 chr13:80838426-80838446 ( 13) GGCAGAAG 1 chr1:79502942-79502962 ( 4) GGCAGAAG 1 chr3:33741000-33741020 ( 4) GCCAAAAA 1 chr21:35538958-35538978 ( 2) GCCAAAAA 1 chr14:67411787-67411807 ( 9) GCCAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARAAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 7.0e+001 -965 -965 227 -965 -965 176 27 -965 -965 217 -965 -965 183 -965 -965 -965 42 -965 159 -965 183 -965 -965 -965 183 -965 -965 -965 83 -965 127 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARAAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 7.0e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARAAR MEME-4 regular expression -------------------------------------------------------------------------------- G[CG]CA[GA]AA[AG] -------------------------------------------------------------------------------- Time 9.30 secs. ******************************************************************************** ******************************************************************************** MOTIF RCARTGGR MEME-5 width = 8 sites = 11 llr = 96 E-value = 9.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCARTGGR MEME-5 Description -------------------------------------------------------------------------------- Simplified A 6:a63::6 pos.-specific C :a:::::: probability G 4::4:aa4 matrix T ::::7::: bits 2.3 * ** 2.0 * ** 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.1 **** *** (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACAATGGA consensus G GA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCARTGGR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:135684931-135684951 7 1.73e-05 tcatat acaatgga actcag chr1:154268291-154268311 12 1.73e-05 ctcttcagaa acaatgga g chr16:72707269-72707289 11 5.57e-05 aataagatta acagtgga tt chr2:240909640-240909660 12 5.57e-05 aagccaagag gcaatgga a chr11:125423403-12542342 4 8.41e-05 aag acagtggg gatgtcccc chr10:31972784-31972804 12 8.41e-05 aggttagaag gcaatggg g chr9:74475057-74475077 3 8.41e-05 ag gcaatggg aaaacatttc chr4:88164759-88164779 10 9.11e-05 agccagaaa gcagtggg atg chr21:34581015-34581035 3 1.08e-04 at acaaagga ccaacatcga chr16:62712866-62712886 1 1.08e-04 . acaaagga tttctcagca chr16:46620268-46620288 8 1.45e-04 gaaaaca acagagga aagaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCARTGGR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:135684931-135684951 1.7e-05 6_[+5]_6 chr1:154268291-154268311 1.7e-05 11_[+5]_1 chr16:72707269-72707289 5.6e-05 10_[+5]_2 chr2:240909640-240909660 5.6e-05 11_[+5]_1 chr11:125423403-12542342 8.4e-05 3_[+5]_9 chr10:31972784-31972804 8.4e-05 11_[+5]_1 chr9:74475057-74475077 8.4e-05 2_[+5]_10 chr4:88164759-88164779 9.1e-05 9_[+5]_3 chr21:34581015-34581035 0.00011 2_[+5]_10 chr16:62712866-62712886 0.00011 [+5]_12 chr16:46620268-46620288 0.00015 7_[+5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCARTGGR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCARTGGR width=8 seqs=11 chr8:135684931-135684951 ( 7) ACAATGGA 1 chr1:154268291-154268311 ( 12) ACAATGGA 1 chr16:72707269-72707289 ( 11) ACAGTGGA 1 chr2:240909640-240909660 ( 12) GCAATGGA 1 chr11:125423403-12542342 ( 4) ACAGTGGG 1 chr10:31972784-31972804 ( 12) GCAATGGG 1 chr9:74475057-74475077 ( 3) GCAATGGG 1 chr4:88164759-88164779 ( 10) GCAGTGGG 1 chr21:34581015-34581035 ( 3) ACAAAGGA 1 chr16:62712866-62712886 ( 1) ACAAAGGA 1 chr16:46620268-46620288 ( 8) ACAGAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCARTGGR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.55806 E= 9.3e+001 118 -1010 81 -1010 -1010 217 -1010 -1010 183 -1010 -1010 -1010 118 -1010 81 -1010 -4 -1010 -1010 132 -1010 -1010 227 -1010 -1010 -1010 227 -1010 118 -1010 81 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCARTGGR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 9.3e+001 0.636364 0.000000 0.363636 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.000000 0.272727 0.000000 0.000000 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.636364 0.000000 0.363636 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCARTGGR MEME-5 regular expression -------------------------------------------------------------------------------- [AG]CA[AG][TA]GG[AG] -------------------------------------------------------------------------------- Time 9.98 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:196246790-196246810 3.95e-02 20 chr2:213728011-213728031 3.68e-01 20 chr7:131021822-131021842 2.34e-03 10_[+3(6.38e-05)]_2 chr2:196995321-196995341 9.57e-01 20 chr2:64130367-64130387 1.73e-03 20 chr2:3400072-3400092 1.85e-03 11_[+3(8.23e-05)]_1 chr7:50286355-50286375 6.07e-03 20 chr2:48575041-48575061 2.53e-01 20 chr14:90065087-90065107 9.85e-01 20 chr10:7491226-7491246 3.80e-01 20 chr1:66852597-66852617 3.33e-03 12_[+4(9.75e-06)] chr7:86957794-86957814 5.03e-01 20 chr8:8293318-8293338 1.24e-02 9_[+3(3.14e-05)]_3 chr2:44537607-44537627 9.33e-01 20 chr2:86977575-86977595 7.02e-03 20 chr3:10287195-10287215 7.07e-02 20 chr1:243394335-243394355 2.02e-03 12_[+2(6.60e-05)] chr3:177144933-177144953 9.56e-01 20 chr4:65096614-65096634 1.42e-01 20 chr3:150393535-150393555 6.14e-01 20 chr11:34921352-34921372 1.18e-01 20 chr7:65730781-65730801 1.10e-02 7_[+2(8.19e-05)]_5 chr10:45440000-45440020 7.96e-04 2_[+3(1.36e-05)]_10 chr18:77690232-77690252 5.47e-01 20 chr18:29554094-29554114 1.44e-05 6_[+1(2.76e-05)]_6 chr1:154268291-154268311 3.65e-06 11_[+5(1.73e-05)]_1 chr18:68110358-68110378 8.48e-06 9_[+1(2.76e-05)]_3 chr2:241471619-241471639 2.13e-03 20 chr8:52878139-52878159 1.24e-02 20 chr11:14358565-14358585 5.03e-04 4_[+2(3.57e-05)]_8 chr4:1740330-1740350 5.32e-02 20 chr2:99055404-99055424 9.31e-02 20 chr4:88164759-88164779 1.62e-05 1_[+4(2.29e-05)]_[+5(9.11e-05)]_3 chr1:235833651-235833671 1.68e-04 10_[+1(2.76e-05)]_2 chr10:85352265-85352285 5.51e-04 [+3(1.36e-05)]_12 chr5:118804175-118804195 3.34e-02 20 chr7:92418075-92418095 4.56e-02 12_[+2(3.57e-05)] chr5:173019254-173019274 2.20e-01 20 chr12:55329417-55329437 1.24e-02 20 chr8:144751419-144751439 1.31e-05 4_[+1(2.76e-05)]_8 chr11:74582257-74582277 8.64e-01 20 chr9:126590980-126591000 2.33e-04 2_[+1(9.76e-05)]_10 chr5:33906535-33906555 8.28e-01 20 chr10:90155656-90155676 2.04e-01 20 chr7:151330501-151330521 3.78e-02 20 chr9:115046327-115046347 9.73e-02 20 chr5:154265622-154265642 9.38e-02 20 chr1:85071068-85071088 2.27e-01 20 chr3:119758647-119758667 5.01e-01 20 chr3:122948175-122948195 2.41e-01 20 chr1:244739760-244739780 2.61e-01 20 chr1:234821964-234821984 1.13e-01 20 chr2:41722399-41722419 2.92e-01 20 chr9:74475057-74475077 2.64e-02 2_[+5(8.41e-05)]_10 chr3:72274107-72274127 9.57e-01 20 chr3:113364205-113364225 3.51e-01 20 chr8:102819228-102819248 2.41e-01 20 chr7:148564865-148564885 3.48e-03 20 chr11:61990832-61990852 2.99e-01 20 chr1:224531473-224531493 3.69e-03 6_[+3(6.38e-05)]_6 chr6:159326502-159326522 7.53e-02 20 chr2:174210976-174210996 4.75e-02 20 chr12:80068523-80068543 7.33e-01 20 chrX:29578332-29578352 1.42e-01 20 chr7:154976795-154976815 1.11e-04 6_[+3(1.36e-05)]_6 chr18:48488539-48488559 4.36e-01 20 chr2:15003690-15003710 4.45e-01 20 chr3:157918956-157918976 8.96e-01 20 chr5:148648693-148648713 4.29e-01 20 chr13:36505021-36505041 3.40e-01 20 chr9:90282268-90282288 2.44e-01 20 chr12:51193919-51193939 6.25e-01 20 chr7:64869101-64869121 9.65e-01 20 chr15:34453715-34453735 1.33e-05 7_[+1(2.76e-05)]_5 chr3:43379916-43379936 1.65e-01 20 chr4:26408147-26408167 3.39e-02 20 chr12:1856937-1856957 2.35e-04 7_[+3(1.36e-05)]_5 chr7:138114473-138114493 8.76e-04 [+2(1.49e-05)]_12 chr1:52682748-52682768 9.34e-04 1_[+2(1.49e-05)]_11 chr18:67386347-67386367 8.96e-01 20 chr6:47480801-47480821 3.68e-01 20 chr18:56313896-56313916 5.24e-01 20 chr5:154258365-154258385 7.86e-02 20 chr7:111436912-111436932 3.54e-01 20 chr8:135684931-135684951 4.52e-02 6_[+5(1.73e-05)]_6 chr4:164115034-164115054 7.34e-01 20 chr20:36871445-36871465 4.23e-01 20 chr15:80212649-80212669 2.33e-01 20 chr7:149408081-149408101 9.44e-04 20 chr6:144524194-144524214 5.64e-02 20 chr12:90681538-90681558 4.78e-04 11_[+3(1.36e-05)]_1 chr2:26440788-26440808 4.57e-01 20 chr2:128577829-128577849 9.96e-01 20 chr15:34446984-34447004 1.33e-05 4_[+1(2.76e-05)]_8 chr10:31972784-31972804 1.30e-03 11_[+5(8.41e-05)]_1 chr9:5708589-5708609 6.67e-01 20 chr6:63362769-63362789 5.78e-01 20 chr12:106676331-10667635 9.97e-01 20 chr2:240909640-240909660 3.64e-03 11_[+5(5.57e-05)]_1 chr9:108497803-108497823 5.00e-02 20 chr6:118895584-118895604 4.67e-04 11_[+1(2.76e-05)]_1 chr16:75156021-75156041 4.58e-01 20 chr4:103780423-103780443 1.74e-03 3_[+1(1.40e-05)]_9 chr14:70107837-70107857 7.74e-01 20 chr9:136462890-136462910 2.35e-04 20 chr10:73705802-73705822 6.13e-01 20 chr13:22003548-22003568 3.58e-01 20 chr14:69083165-69083185 9.76e-01 20 chr1:86843203-86843223 4.05e-02 20 chr5:157782030-157782050 1.81e-03 20 chr4:151879325-151879345 3.23e-03 20 chr9:37565139-37565159 6.56e-01 20 chr3:136899238-136899258 3.28e-02 1_[+3(3.14e-05)]_11 chr6:107106512-107106532 1.84e-02 1_[+3(8.23e-05)]_11 chr2:230999296-230999316 9.58e-01 20 chr14:45727441-45727461 1.32e-02 20 chr6:42402194-42402214 1.27e-01 20 chr14:71545399-71545419 1.53e-01 20 chr8:61866681-61866701 9.84e-01 20 chr21:38774773-38774793 9.42e-01 20 chr11:125423403-12542342 2.73e-03 3_[+5(8.41e-05)]_9 chr7:138250396-138250416 5.95e-01 20 chr9:128218340-128218360 9.42e-01 20 chr17:27255260-27255280 1.69e-01 20 chr4:164653817-164653837 1.03e-01 20 chr19:6292222-6292242 5.48e-01 20 chr7:69694383-69694403 9.67e-01 20 chr9:119639532-119639552 5.30e-03 12_[+1(2.76e-05)] chr18:48503637-48503657 4.23e-01 20 chrX:107137418-107137438 9.99e-01 20 chr1:75191939-75191959 4.32e-03 20 chr7:76838987-76839007 9.41e-03 20 chr2:172280735-172280755 6.17e-01 20 chr17:41457836-41457856 2.82e-02 20 chr21:26822467-26822487 7.19e-03 20 chr1:197694397-197694417 1.35e-02 20 chr2:43511684-43511704 9.23e-02 20 chr7:130940218-130940238 2.57e-01 20 chr19:11717517-11717537 1.60e-01 20 chr3:5001136-5001156 1.66e-01 20 chr5:89189534-89189554 1.80e-03 20 chr2:180790635-180790655 9.06e-02 20 chr2:174163453-174163473 5.77e-01 20 chr1:176127354-176127374 7.39e-03 20 chr14:61425090-61425110 7.09e-03 20 chr5:171678622-171678642 2.54e-01 20 chr14:69332456-69332476 3.57e-02 20 chr7:127835103-127835123 7.48e-01 20 chr4:170012173-170012193 1.02e-04 3_[+1(2.76e-05)]_9 chr11:76487704-76487724 2.45e-02 3_[+1(3.87e-05)]_9 chr5:155221999-155222019 9.99e-03 20 chr8:9693435-9693455 1.63e-02 3_[+1(3.87e-05)]_9 chr12:117001239-11700125 4.78e-01 20 chr1:79113109-79113129 9.27e-01 20 chr14:67411787-67411807 3.98e-02 8_[+4(6.31e-05)]_4 chr3:118088949-118088969 2.90e-01 20 chr6:155675463-155675483 2.10e-03 20 chr20:49156514-49156534 8.97e-01 20 chr8:91628882-91628902 1.90e-02 20 chr19:22130755-22130775 4.54e-01 20 chr6:135803069-135803089 1.19e-03 10_[+3(4.55e-05)]_2 chr1:212570222-212570242 2.17e-02 20 chr6:28294332-28294352 1.80e-01 20 chr13:43019677-43019697 7.08e-01 20 chr9:103047557-103047577 7.88e-01 20 chr21:35538958-35538978 1.41e-03 1_[+4(6.31e-05)]_11 chr21:38721047-38721067 5.99e-01 20 chr18:71960411-71960431 2.24e-02 20 chr8:61517878-61517898 5.67e-01 20 chr2:25117785-25117805 9.08e-02 20 chr14:39885464-39885484 1.34e-01 20 chr1:92868716-92868736 7.61e-01 20 chr3:98117528-98117548 4.90e-02 20 chr6:155668286-155668306 1.91e-01 20 chr6:22173726-22173746 2.88e-01 20 chr2:135731497-135731517 6.90e-02 20 chr3:196483790-196483810 1.72e-01 20 chr18:29358545-29358565 3.02e-01 20 chr1:55109581-55109601 7.68e-02 20 chr12:12806968-12806988 2.10e-01 20 chr16:46620268-46620288 1.19e-02 20 chr14:71410733-71410753 7.67e-06 3_[+3(4.55e-05)]_9 chr5:115612828-115612848 8.36e-01 20 chr18:29240888-29240908 2.13e-01 20 chr7:66717121-66717141 2.06e-05 [+1(2.76e-05)]_12 chr15:42871516-42871536 5.22e-01 20 chr16:62712866-62712886 7.73e-05 10_[+2(1.49e-05)]_2 chr2:103417747-103417767 4.00e-01 20 chr18:56656775-56656795 2.81e-01 20 chr14:68568605-68568625 1.14e-01 20 chr20:726527-726547 7.51e-02 20 chr3:169619467-169619487 2.26e-01 20 chr1:91345016-91345036 2.35e-01 20 chr12:110623972-11062399 9.62e-01 20 chr2:58485842-58485862 2.77e-01 20 chr11:60922990-60923010 2.32e-02 20 chr1:79502942-79502962 4.45e-07 3_[+4(4.53e-05)]_9 chr2:231653479-231653499 5.30e-01 20 chr16:72707269-72707289 6.23e-02 10_[+5(5.57e-05)]_2 chr3:196882107-196882127 2.80e-01 20 chr10:45991428-45991448 2.00e-02 20 chr9:123570059-123570079 1.47e-03 20 chr12:25864073-25864093 1.43e-04 10_[+1(2.76e-05)]_2 chr10:120992200-12099222 9.60e-01 20 chr14:93986571-93986591 4.68e-01 20 chr13:80838426-80838446 4.34e-03 12_[+4(4.53e-05)] chr10:31978353-31978373 5.73e-04 12_[+4(9.75e-06)] chr2:95815390-95815410 4.27e-02 20 chr16:10502848-10502868 6.83e-04 12_[+1(2.76e-05)] chr1:169997102-169997122 2.40e-04 [+2(3.57e-05)]_12 chr8:143452129-143452149 2.86e-03 20 chr12:45757883-45757903 3.95e-01 20 chr2:8699272-8699292 9.71e-05 20 chr6:56037099-56037119 3.72e-01 20 chr9:74493423-74493443 4.16e-02 20 chr19:5535098-5535118 7.48e-02 20 chr3:189463574-189463594 1.42e-04 20 chr3:33741000-33741020 9.88e-03 3_[+4(6.31e-05)]_9 chr12:32197041-32197061 1.20e-02 20 chr6:152543371-152543391 3.89e-04 8_[+1(2.76e-05)]_4 chr6:86206055-86206075 8.04e-02 20 chr3:99206927-99206947 1.27e-02 20 chr1:53671944-53671964 1.31e-01 20 chr7:44522872-44522892 4.23e-05 10_[+5(1.73e-05)]_2 chr13:79970266-79970286 4.26e-04 20 chr13:96386552-96386572 6.43e-01 20 chr14:54561686-54561706 2.18e-04 12_[+2(3.57e-05)] chr3:176231574-176231594 6.36e-01 20 chr21:34581015-34581035 8.64e-02 20 chr2:162009015-162009035 6.40e-01 20 chr1:54400036-54400056 2.03e-04 3_[+3(1.36e-05)]_9 chr10:71309954-71309974 2.35e-04 20 chr4:124212679-124212699 8.64e-03 4_[+2(4.71e-05)]_8 chr10:133609693-13360971 2.06e-05 1_[+1(2.76e-05)]_11 chr7:152402045-152402065 1.17e-04 7_[+1(2.76e-05)]_5 chr20:54775696-54775716 1.26e-01 20 chr6:11493793-11493813 6.82e-01 20 chr4:18064891-18064911 1.06e-03 9_[+3(6.38e-05)]_3 chr10:131385345-13138536 1.47e-04 20 chr9:132275733-132275753 8.24e-04 5_[+3(4.55e-05)]_7 chr7:120096952-120096972 4.21e-02 20 chr1:11566176-11566196 4.28e-01 20 chr7:7270778-7270798 3.49e-01 20 chr4:6060447-6060467 2.30e-05 7_[+1(2.76e-05)]_5 chr11:43489690-43489710 8.57e-05 9_[+2(1.49e-05)]_3 chr10:131289538-13128955 6.30e-01 20 chr2:121407795-121407815 1.89e-03 4_[+3(1.36e-05)]_8 chr13:97620494-97620514 9.44e-01 20 chr11:87929756-87929776 3.59e-02 20 chr14:67960213-67960233 2.27e-02 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************