******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CBX3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:133018889-133018909 1.0000 20 chr2:133028398-133028418 1.0000 20 chr2:133020132-133020152 1.0000 20 chr21:11080324-11080344 1.0000 20 chr21:11175204-11175224 1.0000 20 chr2:133016858-133016878 1.0000 20 chr20:29636782-29636802 1.0000 20 chr8:101395668-101395688 1.0000 20 chr5:142570152-142570172 1.0000 20 chr4:28532-28552 1.0000 20 chr21:11173460-11173480 1.0000 20 chr14:67124573-67124593 1.0000 20 chr21:11087988-11088008 1.0000 20 chr19:29668445-29668465 1.0000 20 chr21:11064227-11064247 1.0000 20 chr21:11183107-11183127 1.0000 20 chr19:58490770-58490790 1.0000 20 chr19:12383502-12383522 1.0000 20 chr1:143540333-143540353 1.0000 20 chr14:55571275-55571295 1.0000 20 chr21:11132133-11132153 1.0000 20 chr4:155311-155331 1.0000 20 chr1:87528897-87528917 1.0000 20 chr21:11064527-11064547 1.0000 20 chr10:44139725-44139745 1.0000 20 chr7:152099716-152099736 1.0000 20 chr19:43733067-43733087 1.0000 20 chr11:14358244-14358264 1.0000 20 chr17:55375713-55375733 1.0000 20 chr3:75749173-75749193 1.0000 20 chr8:72785033-72785053 1.0000 20 chr4:190637603-190637623 1.0000 20 chr2:133026779-133026799 1.0000 20 chr16:88005770-88005790 1.0000 20 chr21:11170574-11170594 1.0000 20 chr1:247302949-247302969 1.0000 20 chr21:11059406-11059426 1.0000 20 chr14:54982645-54982665 1.0000 20 chr7:5091370-5091390 1.0000 20 chr13:22012130-22012150 1.0000 20 chr20:40228637-40228657 1.0000 20 chr16:14558098-14558118 1.0000 20 chr4:44570-44590 1.0000 20 chr1:143534767-143534787 1.0000 20 chr2:234412365-234412385 1.0000 20 chr19:52835142-52835162 1.0000 20 chr3:196968566-196968586 1.0000 20 chr3:75743650-75743670 1.0000 20 chr19:40565666-40565686 1.0000 20 chr12:133780771-13378079 1.0000 20 chr4:41027153-41027173 1.0000 20 chr15:56524438-56524458 1.0000 20 chr21:11053925-11053945 1.0000 20 chr15:67977414-67977434 1.0000 20 chr5:99855300-99855320 1.0000 20 chr7:152104089-152104109 1.0000 20 chr6:70597712-70597732 1.0000 20 chr20:29637068-29637088 1.0000 20 chr16:50738355-50738375 1.0000 20 chr17:80999455-80999475 1.0000 20 chr12:46961833-46961853 1.0000 20 chr21:11099383-11099403 1.0000 20 chr21:11184360-11184380 1.0000 20 chr8:29363758-29363778 1.0000 20 chr3:121702238-121702258 1.0000 20 chr21:11041789-11041809 1.0000 20 chr10:132080984-13208100 1.0000 20 chr11:68693213-68693233 1.0000 20 chr12:14758619-14758639 1.0000 20 chr9:99163092-99163112 1.0000 20 chr1:87338389-87338409 1.0000 20 chr9:99612870-99612890 1.0000 20 chr7:5104398-5104418 1.0000 20 chr14:32215430-32215450 1.0000 20 chr7:152109841-152109861 1.0000 20 chr14:67042122-67042142 1.0000 20 chr12:1824745-1824765 1.0000 20 chr10:64459109-64459129 1.0000 20 chr5:10687181-10687201 1.0000 20 chr7:7895953-7895973 1.0000 20 chr8:28030539-28030559 1.0000 20 chr8:59220701-59220721 1.0000 20 chr17:5085123-5085143 1.0000 20 chr10:98561374-98561394 1.0000 20 chr10:76679572-76679592 1.0000 20 chr6:57264916-57264936 1.0000 20 chr11:82771251-82771271 1.0000 20 chr9:135572831-135572851 1.0000 20 chr8:80972961-80972981 1.0000 20 chr9:35010534-35010554 1.0000 20 chr4:116936388-116936408 1.0000 20 chr19:58024322-58024342 1.0000 20 chr1:24205373-24205393 1.0000 20 chr15:81569509-81569529 1.0000 20 chr2:162005480-162005500 1.0000 20 chr4:190805505-190805525 1.0000 20 chr12:133781003-13378102 1.0000 20 chr13:51497715-51497735 1.0000 20 chr1:248584586-248584606 1.0000 20 chr18:10998074-10998094 1.0000 20 chr4:190156314-190156334 1.0000 20 chr19:36718938-36718958 1.0000 20 chr10:76103745-76103765 1.0000 20 chr1:160484329-160484349 1.0000 20 chr6:111779334-111779354 1.0000 20 chr16:16075881-16075901 1.0000 20 chr19:23564636-23564656 1.0000 20 chr1:174157797-174157817 1.0000 20 chr3:17043269-17043289 1.0000 20 chr18:6344789-6344809 1.0000 20 chr5:151310941-151310961 1.0000 20 chr2:133023538-133023558 1.0000 20 chr6:31304891-31304911 1.0000 20 chr3:149540544-149540564 1.0000 20 chr19:16332195-16332215 1.0000 20 chr10:5432752-5432772 1.0000 20 chr1:247353493-247353513 1.0000 20 chr16:46820521-46820541 1.0000 20 chr21:11084774-11084794 1.0000 20 chr3:119752940-119752960 1.0000 20 chr5:171684920-171684940 1.0000 20 chr4:437206-437226 1.0000 20 chrX:136520467-136520487 1.0000 20 chr22:42635061-42635081 1.0000 20 chr7:152111965-152111985 1.0000 20 chr19:23424710-23424730 1.0000 20 chr4:48225-48245 1.0000 20 chr8:100045759-100045779 1.0000 20 chr6:57280565-57280585 1.0000 20 chr13:41723019-41723039 1.0000 20 chr6:119558602-119558622 1.0000 20 chr20:29653599-29653619 1.0000 20 chr8:66728002-66728022 1.0000 20 chr11:72720828-72720848 1.0000 20 chr15:80208356-80208376 1.0000 20 chr2:133023215-133023235 1.0000 20 chr4:146670867-146670887 1.0000 20 chr19:22327340-22327360 1.0000 20 chr13:47058919-47058939 1.0000 20 chr19:35449443-35449463 1.0000 20 chr16:14580920-14580940 1.0000 20 chr12:807730-807750 1.0000 20 chr14:53607263-53607283 1.0000 20 chr20:29650713-29650733 1.0000 20 chr19:23540315-23540335 1.0000 20 chr20:26190007-26190027 1.0000 20 chr4:67872-67892 1.0000 20 chr4:190613741-190613761 1.0000 20 chr1:160480464-160480484 1.0000 20 chr18:13597257-13597277 1.0000 20 chr3:121755951-121755971 1.0000 20 chr4:106151635-106151655 1.0000 20 chr4:170298695-170298715 1.0000 20 chr17:80903046-80903066 1.0000 20 chr8:107686228-107686248 1.0000 20 chr20:26189046-26189066 1.0000 20 chr12:94816271-94816291 1.0000 20 chr4:25225505-25225525 1.0000 20 chr1:172316614-172316634 1.0000 20 chr2:133025831-133025851 1.0000 20 chr3:127609971-127609991 1.0000 20 chr19:9680712-9680732 1.0000 20 chr11:74612508-74612528 1.0000 20 chr19:14829579-14829599 1.0000 20 chr1:160532782-160532802 1.0000 20 chr15:93492982-93493002 1.0000 20 chr4:190514401-190514421 1.0000 20 chr8:146067605-146067625 1.0000 20 chr4:190565245-190565265 1.0000 20 chr5:35845791-35845811 1.0000 20 chr19:37210117-37210137 1.0000 20 chr11:67063433-67063453 1.0000 20 chr2:122440546-122440566 1.0000 20 chr13:51497452-51497472 1.0000 20 chr7:77436964-77436984 1.0000 20 chr21:11056761-11056781 1.0000 20 chr10:4375592-4375612 1.0000 20 chr7:138212576-138212596 1.0000 20 chr9:74495237-74495257 1.0000 20 chr20:39605837-39605857 1.0000 20 chr21:11043473-11043493 1.0000 20 chr19:9677026-9677046 1.0000 20 chr12:95207084-95207104 1.0000 20 chr7:86834852-86834872 1.0000 20 chr11:72623366-72623386 1.0000 20 chr20:29649654-29649674 1.0000 20 chr6:71424669-71424689 1.0000 20 chr4:38836387-38836407 1.0000 20 chr8:66688061-66688081 1.0000 20 chr4:52669-52689 1.0000 20 chr1:246678996-246679016 1.0000 20 chr20:35994335-35994355 1.0000 20 chr19:12461044-12461064 1.0000 20 chr4:155635-155655 1.0000 20 chr19:12060090-12060110 1.0000 20 chr10:125163994-12516401 1.0000 20 chr8:38512296-38512316 1.0000 20 chr7:8032430-8032450 1.0000 20 chr8:82754682-82754702 1.0000 20 chr11:72835926-72835946 1.0000 20 chr16:16075671-16075691 1.0000 20 chr2:95815048-95815068 1.0000 20 chr15:64929554-64929574 1.0000 20 chr19:21238813-21238833 1.0000 20 chr16:3433072-3433092 1.0000 20 chr5:74816451-74816471 1.0000 20 chr7:155441741-155441761 1.0000 20 chr2:148994620-148994640 1.0000 20 chr16:31908619-31908639 1.0000 20 chr19:44661048-44661068 1.0000 20 chr10:35733006-35733026 1.0000 20 chr7:66541281-66541301 1.0000 20 chr4:190648202-190648222 1.0000 20 chr2:133022510-133022530 1.0000 20 chr16:31901374-31901394 1.0000 20 chr14:32733474-32733494 1.0000 20 chr18:77782873-77782893 1.0000 20 chr19:52537613-52537633 1.0000 20 chr19:19840781-19840801 1.0000 20 chr19:44981170-44981190 1.0000 20 chr14:65963444-65963464 1.0000 20 chr7:43712081-43712101 1.0000 20 chr16:58307193-58307213 1.0000 20 chr8:8216218-8216238 1.0000 20 chr21:9854811-9854831 1.0000 20 chr21:11057011-11057031 1.0000 20 chr1:167292050-167292070 1.0000 20 chr20:29638008-29638028 1.0000 20 chr14:53607478-53607498 1.0000 20 chr4:47275-47295 1.0000 20 chr8:22904283-22904303 1.0000 20 chr19:52810648-52810668 1.0000 20 chr7:134865924-134865944 1.0000 20 chr10:76478226-76478246 1.0000 20 chr11:102303513-10230353 1.0000 20 chr13:103708511-10370853 1.0000 20 chr2:148994876-148994896 1.0000 20 chr8:28030870-28030890 1.0000 20 chr7:46508530-46508550 1.0000 20 chr21:11040645-11040665 1.0000 20 chr6:17895712-17895732 1.0000 20 chr15:93493184-93493204 1.0000 20 chr19:58132203-58132223 1.0000 20 chr3:189368783-189368803 1.0000 20 chr2:198348638-198348658 1.0000 20 chr10:31796079-31796099 1.0000 20 chr8:8220079-8220099 1.0000 20 chr4:38829-38849 1.0000 20 chr4:190544682-190544702 1.0000 20 chr3:121756245-121756265 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_CBX3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/CBX3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.301 C 0.212 G 0.219 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.301 C 0.212 G 0.219 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GWGGCTGG MEME-1 width = 8 sites = 12 llr = 105 E-value = 5.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGGCTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :4:::1:: pos.-specific C 3::28::: probability G 7:a82:9a matrix T 16:::91: bits 2.2 * * 2.0 * * 1.8 * ** 1.6 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGCTGG consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGCTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:198348638-198348658 2 7.67e-06 t gtggctgg gcaaggtggt chr21:11132133-11132153 7 7.67e-06 ggcgtg gtggctgg tgcccg chr19:35449443-35449463 5 1.63e-05 GAAT GAGGCTGG CAATGTGG chr1:167292050-167292070 13 2.37e-05 gagatgggct ctggctgg chr8:66688061-66688081 11 3.21e-05 ccatgttggc caggctgg tc chr10:125163994-12516401 2 4.74e-05 t gtgggtgg tctgtctttt chr4:190805505-190805525 7 4.74e-05 GGGAAT GTGGGTGG GTCAGC chr5:10687181-10687201 7 5.57e-05 atgaca gagcctgg atgacg chr1:246678996-246679016 7 7.40e-05 tctcca ttggctgg agctgg chr20:29636782-29636802 3 1.07e-04 tg gtggcttg tgcctgtggt chr11:102303513-10230353 11 1.26e-04 ctgctctatg cagcctgg gg chr21:11080324-11080344 3 1.54e-04 ct gaggcagg acaatcgcct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGCTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:198348638-198348658 7.7e-06 1_[+1]_11 chr21:11132133-11132153 7.7e-06 6_[+1]_6 chr19:35449443-35449463 1.6e-05 4_[+1]_8 chr1:167292050-167292070 2.4e-05 12_[+1] chr8:66688061-66688081 3.2e-05 10_[+1]_2 chr10:125163994-12516401 4.7e-05 1_[+1]_11 chr4:190805505-190805525 4.7e-05 6_[+1]_6 chr5:10687181-10687201 5.6e-05 6_[+1]_6 chr1:246678996-246679016 7.4e-05 6_[+1]_6 chr20:29636782-29636802 0.00011 2_[+1]_10 chr11:102303513-10230353 0.00013 10_[+1]_2 chr21:11080324-11080344 0.00015 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGCTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGGCTGG width=8 seqs=12 chr2:198348638-198348658 ( 2) GTGGCTGG 1 chr21:11132133-11132153 ( 7) GTGGCTGG 1 chr19:35449443-35449463 ( 5) GAGGCTGG 1 chr1:167292050-167292070 ( 13) CTGGCTGG 1 chr8:66688061-66688081 ( 11) CAGGCTGG 1 chr10:125163994-12516401 ( 2) GTGGGTGG 1 chr4:190805505-190805525 ( 7) GTGGGTGG 1 chr5:10687181-10687201 ( 7) GAGCCTGG 1 chr1:246678996-246679016 ( 7) TTGGCTGG 1 chr20:29636782-29636802 ( 3) GTGGCTTG 1 chr11:102303513-10230353 ( 11) CAGCCTGG 1 chr21:11080324-11080344 ( 3) GAGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGCTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 5.4e+000 -1023 24 161 -168 47 -1023 -1023 112 -1023 -1023 219 -1023 -1023 -35 193 -1023 -1023 198 -39 -1023 -185 -1023 -1023 177 -1023 -1023 206 -168 -1023 -1023 219 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGCTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.4e+000 0.000000 0.250000 0.666667 0.083333 0.416667 0.000000 0.000000 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.833333 0.166667 0.000000 0.083333 0.000000 0.000000 0.916667 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGCTGG MEME-1 regular expression -------------------------------------------------------------------------------- [GC][TA]GGCTGG -------------------------------------------------------------------------------- Time 1.90 secs. ******************************************************************************** ******************************************************************************** MOTIF TYYYYCAG MEME-2 width = 8 sites = 27 llr = 189 E-value = 8.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYYYYCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::7: pos.-specific C :4444a:3 probability G :1:::::7 matrix T a4666:3: bits 2.2 * 2.0 * 1.8 * * 1.6 * * Relative 1.3 * * Entropy 1.1 * **** * (10.1 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTCAG consensus TCCC TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYYYCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:68693213-68693233 3 1.53e-05 ag tctttcag ccctttggac chr21:11057011-11057031 11 5.88e-05 AAAGTTCTTC TCTTCCAG AT chr13:47058919-47058939 5 5.88e-05 tgta tttttcag ttctaagg chr2:148994620-148994640 3 7.09e-05 cc tctctcag ccttcataga chr3:127609971-127609991 13 1.11e-04 tgattacatt tcctccag chr8:72785033-72785053 5 1.11e-04 cact tcctccag gttttcta chr2:122440546-122440566 3 1.45e-04 at tttctcag caaggcaatt chr4:170298695-170298715 1 1.45e-04 . tttctcag cagaaacttt chr20:26190007-26190027 6 1.45e-04 CGAGC TCCCTCAG GACCCAC chr17:55375713-55375733 1 1.45e-04 . tttctcag cagtaggtct chr19:58490770-58490790 3 1.58e-04 TT TTCTCCAG TATGAGTTTT chr4:28532-28552 7 2.03e-04 CCTGCC TCTTTCTG GATGAC chr11:67063433-67063453 2 2.66e-04 c tttttctg tgtttattga chr16:58307193-58307213 4 2.77e-04 ttc tctctctg ttactccca chr5:74816451-74816471 13 3.55e-04 cctcaggcag tcctcctg chr4:190565245-190565265 12 3.55e-04 CCATGGACAG TTTTTCAC A chr13:41723019-41723039 11 3.55e-04 ctaaaaaaaa tcctcctg tt chr4:41027153-41027173 5 3.55e-04 gtcc tccttcac tcccacaa chr19:52537613-52537633 11 4.47e-04 CAGTAAAACC TTTTCCAC AT chr10:44139725-44139745 7 4.47e-04 GAAGGC TTTTCCAC ACTGAT chr20:29649654-29649674 2 6.00e-04 t ttcctcac tgttttccat chr17:5085123-5085143 11 6.25e-04 AATTCTATGA TGTCTCAG AA chr8:8220079-8220099 10 7.55e-04 cagagaccc tgccccag agg chr7:86834852-86834872 9 7.98e-04 ctaactca tctccctc aagt chr18:13597257-13597277 5 7.98e-04 tcat tgtttctg atgagaag chr19:9677026-9677046 2 8.09e-04 C TTCTCCTC TGTGTGAGTT chr14:65963444-65963464 4 1.19e-03 cag ttcttcat agcagtgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYYYCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:68693213-68693233 1.5e-05 2_[+2]_10 chr21:11057011-11057031 5.9e-05 10_[+2]_2 chr13:47058919-47058939 5.9e-05 4_[+2]_8 chr2:148994620-148994640 7.1e-05 2_[+2]_10 chr3:127609971-127609991 0.00011 12_[+2] chr8:72785033-72785053 0.00011 4_[+2]_8 chr2:122440546-122440566 0.00015 2_[+2]_10 chr4:170298695-170298715 0.00015 [+2]_12 chr20:26190007-26190027 0.00015 5_[+2]_7 chr17:55375713-55375733 0.00015 [+2]_12 chr19:58490770-58490790 0.00016 2_[+2]_10 chr4:28532-28552 0.0002 6_[+2]_6 chr11:67063433-67063453 0.00027 1_[+2]_11 chr16:58307193-58307213 0.00028 3_[+2]_9 chr5:74816451-74816471 0.00035 12_[+2] chr4:190565245-190565265 0.00035 11_[+2]_1 chr13:41723019-41723039 0.00035 10_[+2]_2 chr4:41027153-41027173 0.00035 4_[+2]_8 chr19:52537613-52537633 0.00045 10_[+2]_2 chr10:44139725-44139745 0.00045 6_[+2]_6 chr20:29649654-29649674 0.0006 1_[+2]_11 chr17:5085123-5085143 0.00063 10_[+2]_2 chr8:8220079-8220099 0.00075 9_[+2]_3 chr7:86834852-86834872 0.0008 8_[+2]_4 chr18:13597257-13597277 0.0008 4_[+2]_8 chr19:9677026-9677046 0.00081 1_[+2]_11 chr14:65963444-65963464 0.0012 3_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYYYCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYYYYCAG width=8 seqs=27 chr11:68693213-68693233 ( 3) TCTTTCAG 1 chr21:11057011-11057031 ( 11) TCTTCCAG 1 chr13:47058919-47058939 ( 5) TTTTTCAG 1 chr2:148994620-148994640 ( 3) TCTCTCAG 1 chr3:127609971-127609991 ( 13) TCCTCCAG 1 chr8:72785033-72785053 ( 5) TCCTCCAG 1 chr2:122440546-122440566 ( 3) TTTCTCAG 1 chr4:170298695-170298715 ( 1) TTTCTCAG 1 chr20:26190007-26190027 ( 6) TCCCTCAG 1 chr17:55375713-55375733 ( 1) TTTCTCAG 1 chr19:58490770-58490790 ( 3) TTCTCCAG 1 chr4:28532-28552 ( 7) TCTTTCTG 1 chr11:67063433-67063453 ( 2) TTTTTCTG 1 chr16:58307193-58307213 ( 4) TCTCTCTG 1 chr5:74816451-74816471 ( 13) TCCTCCTG 1 chr4:190565245-190565265 ( 12) TTTTTCAC 1 chr13:41723019-41723039 ( 11) TCCTCCTG 1 chr4:41027153-41027173 ( 5) TCCTTCAC 1 chr19:52537613-52537633 ( 11) TTTTCCAC 1 chr10:44139725-44139745 ( 7) TTTTCCAC 1 chr20:29649654-29649674 ( 2) TTCCTCAC 1 chr17:5085123-5085143 ( 11) TGTCTCAG 1 chr8:8220079-8220099 ( 10) TGCCCCAG 1 chr7:86834852-86834872 ( 9) TCTCCCTC 1 chr18:13597257-13597277 ( 5) TGTTTCTG 1 chr19:9677026-9677046 ( 2) TTCTCCTC 1 chr14:65963444-65963464 ( 4) TTCTTCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYYYCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.6982 E= 8.8e+000 -1140 -1140 -1140 190 -1140 107 -98 73 -1140 94 -1140 114 -1140 81 -1140 123 -1140 94 -1140 114 -1140 224 -1140 -1140 123 -1140 -1140 14 -1140 29 168 -285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYYYCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 8.8e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.444444 0.111111 0.444444 0.000000 0.407407 0.000000 0.592593 0.000000 0.370370 0.000000 0.629630 0.000000 0.407407 0.000000 0.592593 0.000000 1.000000 0.000000 0.000000 0.703704 0.000000 0.000000 0.296296 0.000000 0.259259 0.703704 0.037037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYYYCAG MEME-2 regular expression -------------------------------------------------------------------------------- T[CT][TC][TC][TC]C[AT][GC] -------------------------------------------------------------------------------- Time 2.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CCWGCCAC MEME-3 width = 8 sites = 8 llr = 74 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCWGCCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:4:::a: pos.-specific C 9a::89:9 probability G :::a3::1 matrix T ::6::1:: bits 2.2 * * 2.0 * * 1.8 * * ** 1.6 ** * *** Relative 1.3 ** ***** Entropy 1.1 ** ***** (13.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTGCCAC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:8216218-8216238 4 7.57e-06 aat cctgccac gagagcaca chr5:35845791-35845811 3 7.57e-06 cc cctgccac aaacttctgc chr1:143534767-143534787 8 1.61e-05 cgggtct ccagccac cactc chr19:43733067-43733087 9 2.39e-05 tcctgagt cctggcac tgtc chr7:43712081-43712101 10 3.27e-05 ctcaaCAgg ccaggcac agt chr21:11064227-11064247 11 4.05e-05 GGATTTTTCT CCTGCCAG TA chr4:190637603-190637623 1 6.08e-05 . ACTGCCAC TGACTGCACT chr19:36718938-36718958 7 8.03e-05 ataatc ccagctac tcagga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:8216218-8216238 7.6e-06 3_[+3]_9 chr5:35845791-35845811 7.6e-06 2_[+3]_10 chr1:143534767-143534787 1.6e-05 7_[+3]_5 chr19:43733067-43733087 2.4e-05 8_[+3]_4 chr7:43712081-43712101 3.3e-05 9_[+3]_3 chr21:11064227-11064247 4e-05 10_[+3]_2 chr4:190637603-190637623 6.1e-05 [+3]_12 chr19:36718938-36718958 8e-05 6_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCWGCCAC width=8 seqs=8 chr8:8216218-8216238 ( 4) CCTGCCAC 1 chr5:35845791-35845811 ( 3) CCTGCCAC 1 chr1:143534767-143534787 ( 8) CCAGCCAC 1 chr19:43733067-43733087 ( 9) CCTGGCAC 1 chr7:43712081-43712101 ( 10) CCAGGCAC 1 chr21:11064227-11064247 ( 11) CCTGCCAG 1 chr4:190637603-190637623 ( 1) ACTGCCAC 1 chr19:36718938-36718958 ( 7) CCAGCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.98673 E= 1.5e+002 -127 205 -965 -965 -965 224 -965 -965 32 -965 -965 122 -965 -965 219 -965 -965 182 19 -965 -965 205 -965 -110 173 -965 -965 -965 -965 205 -81 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.5e+002 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.000000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.875000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGCCAC MEME-3 regular expression -------------------------------------------------------------------------------- CC[TA]G[CG]CAC -------------------------------------------------------------------------------- Time 6.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTTGCTG MEME-4 width = 8 sites = 6 llr = 60 E-value = 4.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTTGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C :::::8:: probability G a:::822a matrix T :aaa::8: bits 2.2 * * 2.0 * * 1.8 **** * 1.6 ****** * Relative 1.3 ******** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTTGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:4375592-4375612 1 1.15e-05 . GTTTGCTG TACCTCACTT chr8:28030539-28030559 6 1.15e-05 attca gtttgctg gtatttt chr21:11175204-11175224 4 1.15e-05 CTG GTTTGCTG ACCCGTTTT chr4:437206-437226 9 2.09e-05 ACGTAAAG GTTTGCGG ACTG chr4:190156314-190156334 10 3.27e-05 tgtggtggt gtttggtg tag chr10:76679572-76679592 11 4.85e-05 gctgtactca gtttactg at -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:4375592-4375612 1.1e-05 [+4]_12 chr8:28030539-28030559 1.1e-05 5_[+4]_7 chr21:11175204-11175224 1.1e-05 3_[+4]_9 chr4:437206-437226 2.1e-05 8_[+4]_4 chr4:190156314-190156334 3.3e-05 9_[+4]_3 chr10:76679572-76679592 4.9e-05 10_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTTGCTG width=8 seqs=6 chr10:4375592-4375612 ( 1) GTTTGCTG 1 chr8:28030539-28030559 ( 6) GTTTGCTG 1 chr21:11175204-11175224 ( 4) GTTTGCTG 1 chr4:437206-437226 ( 9) GTTTGCGG 1 chr4:190156314-190156334 ( 10) GTTTGGTG 1 chr10:76679572-76679592 ( 11) GTTTACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.52677 E= 4.0e+002 -923 -923 219 -923 -923 -923 -923 190 -923 -923 -923 190 -923 -923 -923 190 -85 -923 193 -923 -923 197 -39 -923 -923 -923 -39 163 -923 -923 219 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.0e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTGCTG MEME-4 regular expression -------------------------------------------------------------------------------- GTTTGCTG -------------------------------------------------------------------------------- Time 8.86 secs. ******************************************************************************** ******************************************************************************** MOTIF ATACCCAG MEME-5 width = 8 sites = 4 llr = 42 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATACCCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:a:::a: pos.-specific C :::aaa:: probability G :3:::::a matrix T :8:::::: bits 2.2 *** * 2.0 *** * 1.8 * ****** 1.6 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATACCCAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATACCCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:72623366-72623386 1 1.53e-05 . atacccag tttattgagg chr7:138212576-138212596 11 1.53e-05 gagtgcactc atacccag cg chr1:24205373-24205393 4 1.53e-05 ttt atacccag ctaaactat chr11:74612508-74612528 3 2.77e-05 aa agacccag aatggccaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATACCCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:72623366-72623386 1.5e-05 [+5]_12 chr7:138212576-138212596 1.5e-05 10_[+5]_2 chr1:24205373-24205393 1.5e-05 3_[+5]_9 chr11:74612508-74612528 2.8e-05 2_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATACCCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATACCCAG width=8 seqs=4 chr11:72623366-72623386 ( 1) ATACCCAG 1 chr7:138212576-138212596 ( 11) ATACCCAG 1 chr1:24205373-24205393 ( 4) ATACCCAG 1 chr11:74612508-74612528 ( 3) AGACCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATACCCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 3.1e+003 173 -865 -865 -865 -865 -865 19 148 173 -865 -865 -865 -865 224 -865 -865 -865 224 -865 -865 -865 224 -865 -865 173 -865 -865 -865 -865 -865 219 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATACCCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.1e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATACCCAG MEME-5 regular expression -------------------------------------------------------------------------------- A[TG]ACCCAG -------------------------------------------------------------------------------- Time 10.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:133018889-133018909 7.36e-01 20 chr2:133028398-133028418 5.07e-01 20 chr2:133020132-133020152 1.66e-01 20 chr21:11080324-11080344 7.02e-02 20 chr21:11175204-11175224 1.09e-03 3_[+4(1.15e-05)]_9 chr2:133016858-133016878 6.68e-01 20 chr20:29636782-29636802 1.98e-02 20 chr8:101395668-101395688 4.61e-01 20 chr5:142570152-142570172 7.69e-01 20 chr4:28532-28552 1.72e-03 20 chr21:11173460-11173480 1.50e-01 20 chr14:67124573-67124593 7.69e-02 20 chr21:11087988-11088008 8.42e-01 20 chr19:29668445-29668465 9.82e-01 20 chr21:11064227-11064247 1.76e-04 10_[+3(4.05e-05)]_2 chr21:11183107-11183127 9.98e-01 20 chr19:58490770-58490790 3.72e-02 20 chr19:12383502-12383522 6.19e-01 20 chr1:143540333-143540353 3.45e-01 20 chr14:55571275-55571295 6.79e-01 20 chr21:11132133-11132153 1.35e-03 6_[+1(7.67e-06)]_6 chr4:155311-155331 9.73e-01 20 chr1:87528897-87528917 2.50e-01 20 chr21:11064527-11064547 5.32e-01 20 chr10:44139725-44139745 9.40e-02 20 chr7:152099716-152099736 3.72e-01 20 chr19:43733067-43733087 5.96e-03 8_[+3(2.39e-05)]_4 chr11:14358244-14358264 9.99e-01 20 chr17:55375713-55375733 5.56e-02 20 chr3:75749173-75749193 6.75e-01 20 chr8:72785033-72785053 4.08e-03 20 chr4:190637603-190637623 8.00e-03 [+3(6.08e-05)]_12 chr2:133026779-133026799 8.69e-01 20 chr16:88005770-88005790 3.91e-01 20 chr21:11170574-11170594 4.04e-01 20 chr1:247302949-247302969 4.73e-02 20 chr21:11059406-11059426 7.42e-02 20 chr14:54982645-54982665 5.76e-01 20 chr7:5091370-5091390 6.06e-01 20 chr13:22012130-22012150 7.57e-01 20 chr20:40228637-40228657 1.10e-01 20 chr16:14558098-14558118 6.44e-01 20 chr4:44570-44590 6.74e-01 20 chr1:143534767-143534787 7.03e-04 7_[+3(1.61e-05)]_5 chr2:234412365-234412385 6.99e-01 20 chr19:52835142-52835162 3.50e-01 20 chr3:196968566-196968586 9.86e-01 20 chr3:75743650-75743670 8.26e-01 20 chr19:40565666-40565686 8.60e-01 20 chr12:133780771-13378079 7.47e-01 20 chr4:41027153-41027173 7.54e-03 20 chr15:56524438-56524458 2.78e-01 20 chr21:11053925-11053945 5.45e-01 20 chr15:67977414-67977434 3.20e-01 20 chr5:99855300-99855320 9.96e-01 20 chr7:152104089-152104109 9.83e-01 20 chr6:70597712-70597732 7.86e-03 20 chr20:29637068-29637088 1.75e-01 20 chr16:50738355-50738375 2.84e-01 20 chr17:80999455-80999475 2.13e-01 20 chr12:46961833-46961853 9.93e-01 20 chr21:11099383-11099403 9.18e-01 20 chr21:11184360-11184380 2.13e-01 20 chr8:29363758-29363778 6.72e-01 20 chr3:121702238-121702258 6.72e-02 20 chr21:11041789-11041809 3.20e-02 20 chr10:132080984-13208100 5.01e-01 20 chr11:68693213-68693233 1.68e-02 2_[+2(1.53e-05)]_10 chr12:14758619-14758639 9.99e-01 20 chr9:99163092-99163112 9.55e-01 20 chr1:87338389-87338409 1.83e-01 20 chr9:99612870-99612890 7.75e-01 20 chr7:5104398-5104418 2.73e-01 20 chr14:32215430-32215450 3.98e-01 20 chr7:152109841-152109861 2.04e-01 20 chr14:67042122-67042142 7.36e-01 20 chr12:1824745-1824765 2.55e-01 20 chr10:64459109-64459129 6.41e-01 20 chr5:10687181-10687201 8.77e-03 6_[+1(5.57e-05)]_6 chr7:7895953-7895973 6.32e-01 20 chr8:28030539-28030559 1.06e-03 5_[+4(1.15e-05)]_7 chr8:59220701-59220721 5.87e-01 20 chr17:5085123-5085143 1.17e-01 20 chr10:98561374-98561394 8.61e-01 20 chr10:76679572-76679592 7.92e-03 10_[+4(4.85e-05)]_2 chr6:57264916-57264936 5.34e-01 20 chr11:82771251-82771271 2.85e-01 20 chr9:135572831-135572851 9.75e-01 20 chr8:80972961-80972981 9.79e-01 20 chr9:35010534-35010554 5.54e-01 20 chr4:116936388-116936408 6.49e-01 20 chr19:58024322-58024342 7.13e-01 20 chr1:24205373-24205393 2.02e-03 3_[+5(1.53e-05)]_9 chr15:81569509-81569529 1.90e-01 20 chr2:162005480-162005500 8.84e-01 20 chr4:190805505-190805525 3.83e-02 6_[+1(4.74e-05)]_6 chr12:133781003-13378102 6.35e-01 20 chr13:51497715-51497735 8.06e-01 20 chr1:248584586-248584606 9.52e-01 20 chr18:10998074-10998094 7.12e-01 20 chr4:190156314-190156334 2.81e-02 9_[+4(3.27e-05)]_3 chr19:36718938-36718958 3.11e-03 6_[+3(8.03e-05)]_6 chr10:76103745-76103765 8.70e-01 20 chr1:160484329-160484349 8.35e-01 20 chr6:111779334-111779354 9.73e-01 20 chr16:16075881-16075901 4.12e-01 20 chr19:23564636-23564656 1.04e-01 20 chr1:174157797-174157817 6.92e-01 20 chr3:17043269-17043289 4.81e-01 20 chr18:6344789-6344809 8.00e-01 20 chr5:151310941-151310961 4.74e-01 20 chr2:133023538-133023558 6.40e-01 20 chr6:31304891-31304911 4.53e-01 20 chr3:149540544-149540564 8.55e-01 20 chr19:16332195-16332215 9.58e-01 20 chr10:5432752-5432772 4.22e-01 20 chr1:247353493-247353513 1.38e-01 20 chr16:46820521-46820541 2.64e-01 20 chr21:11084774-11084794 7.97e-01 20 chr3:119752940-119752960 9.23e-01 20 chr5:171684920-171684940 7.48e-01 20 chr4:437206-437226 3.29e-02 8_[+4(2.09e-05)]_4 chrX:136520467-136520487 8.59e-01 20 chr22:42635061-42635081 8.48e-01 20 chr7:152111965-152111985 7.02e-03 20 chr19:23424710-23424730 2.96e-01 20 chr4:48225-48245 1.54e-01 20 chr8:100045759-100045779 6.71e-01 20 chr6:57280565-57280585 5.26e-01 20 chr13:41723019-41723039 1.90e-01 20 chr6:119558602-119558622 5.44e-02 20 chr20:29653599-29653619 8.09e-01 20 chr8:66728002-66728022 7.31e-01 20 chr11:72720828-72720848 3.49e-02 20 chr15:80208356-80208376 3.46e-01 20 chr2:133023215-133023235 3.03e-01 20 chr4:146670867-146670887 2.12e-01 20 chr19:22327340-22327360 6.51e-01 20 chr13:47058919-47058939 4.97e-02 4_[+2(5.88e-05)]_8 chr19:35449443-35449463 8.05e-03 4_[+1(1.63e-05)]_8 chr16:14580920-14580940 2.26e-01 20 chr12:807730-807750 5.17e-01 20 chr14:53607263-53607283 5.48e-01 20 chr20:29650713-29650733 7.30e-01 20 chr19:23540315-23540335 9.25e-01 20 chr20:26190007-26190027 1.64e-02 20 chr4:67872-67892 1.05e-01 20 chr4:190613741-190613761 8.52e-01 20 chr1:160480464-160480484 7.80e-02 20 chr18:13597257-13597277 2.15e-01 20 chr3:121755951-121755971 1.89e-01 20 chr4:106151635-106151655 2.27e-01 20 chr4:170298695-170298715 4.69e-02 20 chr17:80903046-80903066 9.33e-01 20 chr8:107686228-107686248 7.86e-01 20 chr20:26189046-26189066 4.21e-01 20 chr12:94816271-94816291 9.39e-01 20 chr4:25225505-25225525 9.95e-02 20 chr1:172316614-172316634 1.08e-01 20 chr2:133025831-133025851 3.03e-01 20 chr3:127609971-127609991 5.29e-02 20 chr19:9680712-9680732 8.33e-01 20 chr11:74612508-74612528 1.23e-02 2_[+5(2.77e-05)]_10 chr19:14829579-14829599 2.69e-01 20 chr1:160532782-160532802 9.80e-01 20 chr15:93492982-93493002 2.00e-01 20 chr4:190514401-190514421 2.86e-01 20 chr8:146067605-146067625 4.58e-01 20 chr4:190565245-190565265 5.54e-02 20 chr5:35845791-35845811 1.25e-02 2_[+3(7.57e-06)]_10 chr19:37210117-37210137 9.62e-01 20 chr11:67063433-67063453 1.74e-02 20 chr2:122440546-122440566 2.68e-03 20 chr13:51497452-51497472 7.67e-01 20 chr7:77436964-77436984 9.97e-01 20 chr21:11056761-11056781 8.29e-01 20 chr10:4375592-4375612 3.13e-03 [+4(1.15e-05)]_12 chr7:138212576-138212596 8.23e-03 10_[+5(1.53e-05)]_2 chr9:74495237-74495257 6.27e-01 20 chr20:39605837-39605857 8.21e-01 20 chr21:11043473-11043493 3.55e-01 20 chr19:9677026-9677046 1.37e-01 20 chr12:95207084-95207104 9.62e-01 20 chr7:86834852-86834872 2.77e-01 20 chr11:72623366-72623386 3.71e-04 [+5(1.53e-05)]_12 chr20:29649654-29649674 1.36e-01 20 chr6:71424669-71424689 9.42e-01 20 chr4:38836387-38836407 9.76e-01 20 chr8:66688061-66688081 4.85e-04 10_[+1(3.21e-05)]_2 chr4:52669-52689 9.94e-01 20 chr1:246678996-246679016 4.23e-03 6_[+1(7.40e-05)]_6 chr20:35994335-35994355 5.12e-01 20 chr19:12461044-12461064 7.62e-01 20 chr4:155635-155655 2.30e-01 20 chr19:12060090-12060110 2.46e-01 20 chr10:125163994-12516401 1.92e-02 1_[+1(4.74e-05)]_11 chr8:38512296-38512316 9.99e-01 20 chr7:8032430-8032450 2.69e-01 20 chr8:82754682-82754702 3.18e-01 20 chr11:72835926-72835946 9.60e-01 20 chr16:16075671-16075691 7.68e-01 20 chr2:95815048-95815068 4.57e-01 20 chr15:64929554-64929574 5.00e-01 20 chr19:21238813-21238833 6.00e-01 20 chr16:3433072-3433092 9.07e-01 20 chr5:74816451-74816471 4.03e-03 20 chr7:155441741-155441761 8.96e-01 20 chr2:148994620-148994640 1.56e-02 2_[+2(7.09e-05)]_10 chr16:31908619-31908639 8.87e-01 20 chr19:44661048-44661068 9.09e-01 20 chr10:35733006-35733026 7.30e-02 20 chr7:66541281-66541301 3.51e-01 20 chr4:190648202-190648222 5.48e-01 20 chr2:133022510-133022530 9.62e-01 20 chr16:31901374-31901394 3.54e-01 20 chr14:32733474-32733494 1.51e-01 20 chr18:77782873-77782893 3.90e-01 20 chr19:52537613-52537633 2.02e-01 20 chr19:19840781-19840801 9.37e-01 20 chr19:44981170-44981190 8.78e-01 20 chr14:65963444-65963464 1.89e-01 20 chr7:43712081-43712101 6.39e-03 9_[+3(3.27e-05)]_3 chr16:58307193-58307213 6.20e-02 20 chr8:8216218-8216238 3.21e-03 3_[+3(7.57e-06)]_9 chr21:9854811-9854831 2.90e-01 20 chr21:11057011-11057031 1.82e-02 10_[+2(5.88e-05)]_2 chr1:167292050-167292070 6.11e-03 12_[+1(2.37e-05)] chr20:29638008-29638028 1.95e-01 20 chr14:53607478-53607498 7.84e-01 20 chr4:47275-47295 3.61e-01 20 chr8:22904283-22904303 4.85e-01 20 chr19:52810648-52810668 3.62e-01 20 chr7:134865924-134865944 5.81e-02 20 chr10:76478226-76478246 1.53e-01 20 chr11:102303513-10230353 4.08e-03 20 chr13:103708511-10370853 1.00e+00 20 chr2:148994876-148994896 4.59e-01 20 chr8:28030870-28030890 1.42e-01 20 chr7:46508530-46508550 6.90e-01 20 chr21:11040645-11040665 9.98e-01 20 chr6:17895712-17895732 1.26e-01 20 chr15:93493184-93493204 3.05e-01 20 chr19:58132203-58132223 5.37e-01 20 chr3:189368783-189368803 2.84e-02 20 chr2:198348638-198348658 6.13e-03 1_[+1(7.67e-06)]_11 chr10:31796079-31796099 3.79e-01 20 chr8:8220079-8220099 3.05e-04 20 chr4:38829-38849 7.66e-01 20 chr4:190544682-190544702 4.74e-01 20 chr3:121756245-121756265 7.36e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************