******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/BMI1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:126734285-126734305 1.0000 20 chrX:133682434-133682454 1.0000 20 chr17:70927449-70927469 1.0000 20 chr10:104172976-10417299 1.0000 20 chr11:130701712-13070173 1.0000 20 chr13:31648262-31648282 1.0000 20 chr17:30406949-30406969 1.0000 20 chr2:70017651-70017671 1.0000 20 chr1:169056472-169056492 1.0000 20 chr4:114957785-114957805 1.0000 20 chr7:25902637-25902657 1.0000 20 chr19:1860231-1860251 1.0000 20 chr20:5695374-5695394 1.0000 20 chr20:5639720-5639740 1.0000 20 chr12:89560440-89560460 1.0000 20 chr4:87281258-87281278 1.0000 20 chr2:132285438-132285458 1.0000 20 chr14:77552819-77552839 1.0000 20 chrX:49605524-49605544 1.0000 20 chr1:90092582-90092602 1.0000 20 chr7:100087644-100087664 1.0000 20 chr1:116802403-116802423 1.0000 20 chr9:129482127-129482147 1.0000 20 chr17:57643523-57643543 1.0000 20 chr1:182395673-182395693 1.0000 20 chr17:38375078-38375098 1.0000 20 chr4:47147798-47147818 1.0000 20 chr7:20346924-20346944 1.0000 20 chr7:99699592-99699612 1.0000 20 chr20:5827108-5827128 1.0000 20 chr6:37253961-37253981 1.0000 20 chr1:15735960-15735980 1.0000 20 chr16:19302901-19302921 1.0000 20 chr5:43193913-43193933 1.0000 20 chr1:153309333-153309353 1.0000 20 chr9:6759320-6759340 1.0000 20 chr10:107597858-10759787 1.0000 20 chr8:125700252-125700272 1.0000 20 chr10:25305088-25305108 1.0000 20 chr12:99525881-99525901 1.0000 20 chr2:118444487-118444507 1.0000 20 chr6:32941077-32941097 1.0000 20 chr8:29743432-29743452 1.0000 20 chr12:9066920-9066940 1.0000 20 chr2:8615536-8615556 1.0000 20 chr3:32501846-32501866 1.0000 20 chr2:241771953-241771973 1.0000 20 chrX:133938050-133938070 1.0000 20 chr1:47697258-47697278 1.0000 20 chr2:74741190-74741210 1.0000 20 chr20:34652631-34652651 1.0000 20 chr5:159933857-159933877 1.0000 20 chr12:120450295-12045031 1.0000 20 chr19:56098809-56098829 1.0000 20 chr3:167098114-167098134 1.0000 20 chr8:26324999-26325019 1.0000 20 chr3:38080693-38080713 1.0000 20 chr8:71085137-71085157 1.0000 20 chr12:85430098-85430118 1.0000 20 chr17:64188396-64188416 1.0000 20 chr12:76478569-76478589 1.0000 20 chr3:50170339-50170359 1.0000 20 chr1:21525649-21525669 1.0000 20 chr1:16494479-16494499 1.0000 20 chr2:238574554-238574574 1.0000 20 chrX:73197451-73197471 1.0000 20 chr6:141785838-141785858 1.0000 20 chr17:7118017-7118037 1.0000 20 chr10:3916086-3916106 1.0000 20 chr5:162196241-162196261 1.0000 20 chr12:14556829-14556849 1.0000 20 chr8:41997877-41997897 1.0000 20 chr15:64889532-64889552 1.0000 20 chr8:70982305-70982325 1.0000 20 chr17:64701159-64701179 1.0000 20 chr10:26829716-26829736 1.0000 20 chr22:23487629-23487649 1.0000 20 chr14:59656730-59656750 1.0000 20 chr14:91716697-91716717 1.0000 20 chr14:58797927-58797947 1.0000 20 chr11:64388373-64388393 1.0000 20 chr16:70843557-70843577 1.0000 20 chr19:743371-743391 1.0000 20 chrX:37853265-37853285 1.0000 20 chr12:48577337-48577357 1.0000 20 chr2:16845698-16845718 1.0000 20 chr19:17866906-17866926 1.0000 20 chr1:155164704-155164724 1.0000 20 chr11:62537466-62537486 1.0000 20 chrX:102024023-102024043 1.0000 20 chr3:195920077-195920097 1.0000 20 chr7:100797545-100797565 1.0000 20 chr6:15427759-15427779 1.0000 20 chrX:102809916-102809936 1.0000 20 chr16:29675646-29675666 1.0000 20 chr6:25015583-25015603 1.0000 20 chr6:32383732-32383752 1.0000 20 chr9:129486261-129486281 1.0000 20 chr6:24360374-24360394 1.0000 20 chr17:7108224-7108244 1.0000 20 chr9:128508366-128508386 1.0000 20 chr11:8615545-8615565 1.0000 20 chr6:36733805-36733825 1.0000 20 chr2:64371781-64371801 1.0000 20 chr1:6639913-6639933 1.0000 20 chr6:30035240-30035260 1.0000 20 chr10:127585135-12758515 1.0000 20 chr5:88025360-88025380 1.0000 20 chr1:39564384-39564404 1.0000 20 chr15:76632545-76632565 1.0000 20 chr12:122110560-12211058 1.0000 20 chr19:13958172-13958192 1.0000 20 chr16:13531081-13531101 1.0000 20 chr1:42928764-42928784 1.0000 20 chr17:9479933-9479953 1.0000 20 chr16:1381915-1381935 1.0000 20 chr17:1957226-1957246 1.0000 20 chr15:90728509-90728529 1.0000 20 chr13:24554443-24554463 1.0000 20 chr7:137846475-137846495 1.0000 20 chr14:89960586-89960606 1.0000 20 chr19:46148680-46148700 1.0000 20 chr12:69555812-69555832 1.0000 20 chr11:130676832-13067685 1.0000 20 chr22:23484224-23484244 1.0000 20 chr8:60556492-60556512 1.0000 20 chr3:14186158-14186178 1.0000 20 chr10:133575639-13357565 1.0000 20 chr12:76209339-76209359 1.0000 20 chr16:84628224-84628244 1.0000 20 chr12:15105390-15105410 1.0000 20 chr8:33540780-33540800 1.0000 20 chr19:17580360-17580380 1.0000 20 chr19:6393568-6393588 1.0000 20 chr1:161016599-161016619 1.0000 20 chr17:45929857-45929877 1.0000 20 chr18:77905786-77905806 1.0000 20 chr19:18263420-18263440 1.0000 20 chr8:38243679-38243699 1.0000 20 chr5:155829851-155829871 1.0000 20 chr7:100965075-100965095 1.0000 20 chr20:328505-328525 1.0000 20 chr14:24664475-24664495 1.0000 20 chr12:54653431-54653451 1.0000 20 chr7:46018027-46018047 1.0000 20 chr13:49227758-49227778 1.0000 20 chr1:32254270-32254290 1.0000 20 chr2:54557979-54557999 1.0000 20 chr5:127040925-127040945 1.0000 20 chr17:63175552-63175572 1.0000 20 chr1:40349178-40349198 1.0000 20 chr14:52313706-52313726 1.0000 20 chr16:71598824-71598844 1.0000 20 chr19:58874255-58874275 1.0000 20 chr4:92210289-92210309 1.0000 20 chr13:100648133-10064815 1.0000 20 chr6:22036686-22036706 1.0000 20 chr17:58239137-58239157 1.0000 20 chr14:50102021-50102041 1.0000 20 chr11:46941534-46941554 1.0000 20 chr2:27193274-27193294 1.0000 20 chr9:86886591-86886611 1.0000 20 chr20:42365601-42365621 1.0000 20 chr20:17550664-17550684 1.0000 20 chr10:76349192-76349212 1.0000 20 chr17:74137406-74137426 1.0000 20 chr19:55690797-55690817 1.0000 20 chr17:27068564-27068584 1.0000 20 chr14:77786736-77786756 1.0000 20 chrX:117487304-117487324 1.0000 20 chr19:47250112-47250132 1.0000 20 chr9:135545819-135545839 1.0000 20 chr20:291151-291171 1.0000 20 chr1:111889216-111889236 1.0000 20 chr19:13842481-13842501 1.0000 20 chr19:38705049-38705069 1.0000 20 chr1:37979555-37979575 1.0000 20 chr16:4784830-4784850 1.0000 20 chr3:15837622-15837642 1.0000 20 chr7:102920723-102920743 1.0000 20 chr11:27384850-27384870 1.0000 20 chr1:27951467-27951487 1.0000 20 chrX:48774772-48774792 1.0000 20 chr5:34839236-34839256 1.0000 20 chr1:33199726-33199746 1.0000 20 chr18:32621252-32621272 1.0000 20 chr19:30101789-30101809 1.0000 20 chr15:73611312-73611332 1.0000 20 chr6:32145669-32145689 1.0000 20 chr11:44633395-44633415 1.0000 20 chr22:25506863-25506883 1.0000 20 chr20:8000492-8000512 1.0000 20 chr1:12719200-12719220 1.0000 20 chr2:47143195-47143215 1.0000 20 chr16:72206373-72206393 1.0000 20 chr2:46137046-46137066 1.0000 20 chr10:18713359-18713379 1.0000 20 chr6:16301969-16301989 1.0000 20 chr14:77506878-77506898 1.0000 20 chr17:41132526-41132546 1.0000 20 chr15:55700714-55700734 1.0000 20 chr4:156298099-156298119 1.0000 20 chr4:2043668-2043688 1.0000 20 chr10:26737793-26737813 1.0000 20 chr10:104434054-10443407 1.0000 20 chr7:156433426-156433446 1.0000 20 chr19:50528972-50528992 1.0000 20 chr8:125462518-125462538 1.0000 20 chr17:62075690-62075710 1.0000 20 chr14:77393236-77393256 1.0000 20 chr20:11873052-11873072 1.0000 20 chr3:13115001-13115021 1.0000 20 chr2:170550927-170550947 1.0000 20 chr7:150710925-150710945 1.0000 20 chr1:98293632-98293652 1.0000 20 chr1:206808812-206808832 1.0000 20 chr11:95431385-95431405 1.0000 20 chr5:81046969-81046989 1.0000 20 chr6:64353985-64354005 1.0000 20 chr1:25848992-25849012 1.0000 20 chr3:12525963-12525983 1.0000 20 chr7:5490502-5490522 1.0000 20 chr14:102771475-10277149 1.0000 20 chr3:13493352-13493372 1.0000 20 chr1:14849523-14849543 1.0000 20 chr15:43803195-43803215 1.0000 20 chr22:21400100-21400120 1.0000 20 chr1:1004759-1004779 1.0000 20 chr2:55746753-55746773 1.0000 20 chr1:15573704-15573724 1.0000 20 chr2:47229889-47229909 1.0000 20 chr22:24181041-24181061 1.0000 20 chr17:8079715-8079735 1.0000 20 chr10:99393292-99393312 1.0000 20 chr17:41170495-41170515 1.0000 20 chr11:35187756-35187776 1.0000 20 chr19:3572559-3572579 1.0000 20 chr22:37726674-37726694 1.0000 20 chr13:52380874-52380894 1.0000 20 chr8:94767020-94767040 1.0000 20 chr15:71185098-71185118 1.0000 20 chr19:36360357-36360377 1.0000 20 chr2:232469575-232469595 1.0000 20 chr17:36981292-36981312 1.0000 20 chr8:101464403-101464423 1.0000 20 chr15:82555147-82555167 1.0000 20 chr8:59323869-59323889 1.0000 20 chr8:133687851-133687871 1.0000 20 chr1:201123680-201123700 1.0000 20 chr18:33103994-33104014 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_BMI1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/BMI1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.218 C 0.288 G 0.281 T 0.213 Background letter frequencies (from file dataset with add-one prior applied): A 0.218 C 0.288 G 0.281 T 0.213 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTTRCCAT MEME-1 width = 8 sites = 55 llr = 407 E-value = 1.8e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTRCCAT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::14::81 pos.-specific C ::2:a91: probability G a::4:::: matrix T :a72:118 bits 2.2 2.0 * 1.8 * 1.6 ** * * Relative 1.3 ** ** * Entropy 1.1 ** **** (10.7 bits) 0.9 *** **** 0.7 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTACCAT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTRCCAT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:76209339-76209359 10 1.07e-05 GTCGCCATG GTTACCAT TAG chr17:9479933-9479953 11 1.07e-05 GCGCTCGTCC GTTACCAT AA chr12:48577337-48577357 8 1.07e-05 CTTCCTG GTTACCAT GGAGA chr4:47147798-47147818 11 1.07e-05 GATGAGAATC GTTACCAT AG chr1:182395673-182395693 13 1.07e-05 GTGGGGACTT GTTACCAT chr20:5695374-5695394 9 1.07e-05 CTGACATT GTTACCAT GGTT chr1:169056472-169056492 13 1.07e-05 tgttatcact gttACCAT chr2:47229889-47229909 10 2.45e-05 CCCCTCCCT GTTGCCAT GGT chr8:125462518-125462538 10 2.45e-05 cttcctgac gttgccat ggc chr2:46137046-46137066 12 2.45e-05 GCTGCTTGGG GTTGCCAT G chr14:77786736-77786756 3 2.45e-05 CG GTTGCCAT GGTGCCCGCC chr20:42365601-42365621 9 2.45e-05 agtttact gttgccat ggca chr6:22036686-22036706 11 2.45e-05 TGGCAGTCTC GTTGCCAT GG chr12:85430098-85430118 12 2.45e-05 GTGATTGGCT GTTGCCAT G chr6:32941077-32941097 13 2.45e-05 GCCCTGTAGG GTTGCCAT chr14:24664475-24664495 9 3.50e-05 CCTGGCCC GTTTCCAT GGCA chr6:24360374-24360394 3 3.50e-05 CT GTTTCCAT AGCAACCGCA chr8:125700252-125700272 6 3.50e-05 TATTA GTTTCCAT GGTAACC chr1:15735960-15735980 11 3.50e-05 ACAGCGagtc gtttccat ag chr9:129482127-129482147 13 3.50e-05 CGGCACTTGG GTTTCCAT chr4:92210289-92210309 10 4.59e-05 agcttgggg gtaaccat agc chr8:60556492-60556512 1 4.59e-05 . GTAACCAT GGTGACGGCC chr1:39564384-39564404 2 4.59e-05 A GTAACCAT TTTGAGGGTT chr1:21525649-21525669 8 4.59e-05 aatgaag gtaaccat agcaa chr6:32145669-32145689 1 7.93e-05 . GTCACCAT GGCGACAAGA chrX:102809916-102809936 1 7.93e-05 . GTTACTAT GGTAACCGCG chr8:41997877-41997897 4 7.93e-05 CCC GTCACCAT GGCAACCAC chr19:36360357-36360377 12 1.51e-04 GGGGACCCAG GTCGCCAT A chr9:86886591-86886611 13 1.51e-04 CGCCTCGTCT GTTGCTAT chr4:114957785-114957805 12 1.51e-04 CTGAAGAACA GTTGCTAT G chr10:26737793-26737813 12 1.79e-04 AATGTGATCT GTTGCCCT A chr7:20346924-20346944 10 2.15e-04 AACGTGTTT GTTCCCAT GGA chr15:82555147-82555167 4 2.50e-04 TCT GTTGCCTT GACTACGGC chr1:161016599-161016619 9 2.50e-04 GGCCACTA GTCTCCAT GACA chr3:13493352-13493372 2 2.58e-04 g tttaccat tgccgtggca chr22:24181041-24181061 4 3.04e-04 GCT GTAACCAA GGCGACGTC chr1:111889216-111889236 12 3.04e-04 ACTAGCCTTC GTTTCCTT G chr1:153309333-153309353 1 3.04e-04 . GTAACCAA GAGAAGATGC chr11:46941534-46941554 11 3.12e-04 CATCACCATG GTAACTAT TA chr17:62075690-62075710 10 4.45e-04 GTCCTCGGC GTCGCCAA GGC chr17:57643523-57643543 1 4.45e-04 . GTTACCCA CCACTTGGCC chr14:102771475-10277149 2 4.98e-04 T GTCACCCT AGCAACCGTC chr19:47250112-47250132 10 4.98e-04 GCCAGGTTG GTTGTCAT GGT chr5:127040925-127040945 8 4.98e-04 TACCATG GTTACTCT GAGGC chrX:73197451-73197471 1 4.98e-04 . gttactct ctgtgtatca chr19:13842481-13842501 6 6.85e-04 CCCCG GTCGCCCT GACAACA chr8:59323869-59323889 7 7.57e-04 CCTGCG GTTGCCAG GCAACC chr19:13958172-13958192 11 7.57e-04 ACTGGCCGAA GTTCCCAA AT chr10:25305088-25305108 3 7.57e-04 CG GTTGCCGT GGAAACCGTT chr16:71598824-71598844 13 8.23e-04 GCTGTGTCCT GTTGCCTA chr1:42928764-42928784 2 8.23e-04 T GTCTCCAA AGCCAATGGA chr8:71085137-71085157 12 8.23e-04 ATTTGGTTTT GTTGCCTA G chr20:34652631-34652651 9 8.96e-04 CGGCCGCG GCTGCCAT GGCA chr13:31648262-31648282 7 8.96e-04 AACCAT TTAACCAT GTGTCT chr10:104172976-10417299 9 1.01e-03 GCAACCCG GTCTCCCT GGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTRCCAT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:76209339-76209359 1.1e-05 9_[+1]_3 chr17:9479933-9479953 1.1e-05 10_[+1]_2 chr12:48577337-48577357 1.1e-05 7_[+1]_5 chr4:47147798-47147818 1.1e-05 10_[+1]_2 chr1:182395673-182395693 1.1e-05 12_[+1] chr20:5695374-5695394 1.1e-05 8_[+1]_4 chr1:169056472-169056492 1.1e-05 12_[+1] chr2:47229889-47229909 2.5e-05 9_[+1]_3 chr8:125462518-125462538 2.5e-05 9_[+1]_3 chr2:46137046-46137066 2.5e-05 11_[+1]_1 chr14:77786736-77786756 2.5e-05 2_[+1]_10 chr20:42365601-42365621 2.5e-05 8_[+1]_4 chr6:22036686-22036706 2.5e-05 10_[+1]_2 chr12:85430098-85430118 2.5e-05 11_[+1]_1 chr6:32941077-32941097 2.5e-05 12_[+1] chr14:24664475-24664495 3.5e-05 8_[+1]_4 chr6:24360374-24360394 3.5e-05 2_[+1]_10 chr8:125700252-125700272 3.5e-05 5_[+1]_7 chr1:15735960-15735980 3.5e-05 10_[+1]_2 chr9:129482127-129482147 3.5e-05 12_[+1] chr4:92210289-92210309 4.6e-05 9_[+1]_3 chr8:60556492-60556512 4.6e-05 [+1]_12 chr1:39564384-39564404 4.6e-05 1_[+1]_11 chr1:21525649-21525669 4.6e-05 7_[+1]_5 chr6:32145669-32145689 7.9e-05 [+1]_12 chrX:102809916-102809936 7.9e-05 [+1]_12 chr8:41997877-41997897 7.9e-05 3_[+1]_9 chr19:36360357-36360377 0.00015 11_[+1]_1 chr9:86886591-86886611 0.00015 12_[+1] chr4:114957785-114957805 0.00015 11_[+1]_1 chr10:26737793-26737813 0.00018 11_[+1]_1 chr7:20346924-20346944 0.00021 9_[+1]_3 chr15:82555147-82555167 0.00025 3_[+1]_9 chr1:161016599-161016619 0.00025 8_[+1]_4 chr3:13493352-13493372 0.00026 1_[+1]_11 chr22:24181041-24181061 0.0003 3_[+1]_9 chr1:111889216-111889236 0.0003 11_[+1]_1 chr1:153309333-153309353 0.0003 [+1]_12 chr11:46941534-46941554 0.00031 10_[+1]_2 chr17:62075690-62075710 0.00044 9_[+1]_3 chr17:57643523-57643543 0.00044 [+1]_12 chr14:102771475-10277149 0.0005 1_[+1]_11 chr19:47250112-47250132 0.0005 9_[+1]_3 chr5:127040925-127040945 0.0005 7_[+1]_5 chrX:73197451-73197471 0.0005 [+1]_12 chr19:13842481-13842501 0.00068 5_[+1]_7 chr8:59323869-59323889 0.00076 6_[+1]_6 chr19:13958172-13958192 0.00076 10_[+1]_2 chr10:25305088-25305108 0.00076 2_[+1]_10 chr16:71598824-71598844 0.00082 12_[+1] chr1:42928764-42928784 0.00082 1_[+1]_11 chr8:71085137-71085157 0.00082 11_[+1]_1 chr20:34652631-34652651 0.0009 8_[+1]_4 chr13:31648262-31648282 0.0009 6_[+1]_6 chr10:104172976-10417299 0.001 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTRCCAT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTRCCAT width=8 seqs=55 chr12:76209339-76209359 ( 10) GTTACCAT 1 chr17:9479933-9479953 ( 11) GTTACCAT 1 chr12:48577337-48577357 ( 8) GTTACCAT 1 chr4:47147798-47147818 ( 11) GTTACCAT 1 chr1:182395673-182395693 ( 13) GTTACCAT 1 chr20:5695374-5695394 ( 9) GTTACCAT 1 chr1:169056472-169056492 ( 13) GTTACCAT 1 chr2:47229889-47229909 ( 10) GTTGCCAT 1 chr8:125462518-125462538 ( 10) GTTGCCAT 1 chr2:46137046-46137066 ( 12) GTTGCCAT 1 chr14:77786736-77786756 ( 3) GTTGCCAT 1 chr20:42365601-42365621 ( 9) GTTGCCAT 1 chr6:22036686-22036706 ( 11) GTTGCCAT 1 chr12:85430098-85430118 ( 12) GTTGCCAT 1 chr6:32941077-32941097 ( 13) GTTGCCAT 1 chr14:24664475-24664495 ( 9) GTTTCCAT 1 chr6:24360374-24360394 ( 3) GTTTCCAT 1 chr8:125700252-125700272 ( 6) GTTTCCAT 1 chr1:15735960-15735980 ( 11) GTTTCCAT 1 chr9:129482127-129482147 ( 13) GTTTCCAT 1 chr4:92210289-92210309 ( 10) GTAACCAT 1 chr8:60556492-60556512 ( 1) GTAACCAT 1 chr1:39564384-39564404 ( 2) GTAACCAT 1 chr1:21525649-21525669 ( 8) GTAACCAT 1 chr6:32145669-32145689 ( 1) GTCACCAT 1 chrX:102809916-102809936 ( 1) GTTACTAT 1 chr8:41997877-41997897 ( 4) GTCACCAT 1 chr19:36360357-36360377 ( 12) GTCGCCAT 1 chr9:86886591-86886611 ( 13) GTTGCTAT 1 chr4:114957785-114957805 ( 12) GTTGCTAT 1 chr10:26737793-26737813 ( 12) GTTGCCCT 1 chr7:20346924-20346944 ( 10) GTTCCCAT 1 chr15:82555147-82555167 ( 4) GTTGCCTT 1 chr1:161016599-161016619 ( 9) GTCTCCAT 1 chr3:13493352-13493372 ( 2) TTTACCAT 1 chr22:24181041-24181061 ( 4) GTAACCAA 1 chr1:111889216-111889236 ( 12) GTTTCCTT 1 chr1:153309333-153309353 ( 1) GTAACCAA 1 chr11:46941534-46941554 ( 11) GTAACTAT 1 chr17:62075690-62075710 ( 10) GTCGCCAA 1 chr17:57643523-57643543 ( 1) GTTACCCA 1 chr14:102771475-10277149 ( 2) GTCACCCT 1 chr19:47250112-47250132 ( 10) GTTGTCAT 1 chr5:127040925-127040945 ( 8) GTTACTCT 1 chrX:73197451-73197471 ( 1) GTTACTCT 1 chr19:13842481-13842501 ( 6) GTCGCCCT 1 chr8:59323869-59323889 ( 7) GTTGCCAG 1 chr19:13958172-13958192 ( 11) GTTCCCAA 1 chr10:25305088-25305108 ( 3) GTTGCCGT 1 chr16:71598824-71598844 ( 13) GTTGCCTA 1 chr1:42928764-42928784 ( 2) GTCTCCAA 1 chr8:71085137-71085157 ( 12) GTTGCCTA 1 chr20:34652631-34652651 ( 9) GCTGCCAT 1 chr13:31648262-31648282 ( 7) TTAACCAT 1 chr10:104172976-10417299 ( 9) GTCTCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTRCCAT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.83209 E= 1.8e-041 -1243 -1243 178 -255 -1243 -398 -1243 220 -58 -82 -1243 170 94 -298 44 -38 -1243 177 -1243 -355 -1243 163 -1243 -97 184 -118 -395 -155 -58 -1243 -395 197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTRCCAT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 1.8e-041 0.000000 0.000000 0.963636 0.036364 0.000000 0.018182 0.000000 0.981818 0.145455 0.163636 0.000000 0.690909 0.418182 0.036364 0.381818 0.163636 0.000000 0.981818 0.000000 0.018182 0.000000 0.890909 0.000000 0.109091 0.781818 0.127273 0.018182 0.072727 0.145455 0.000000 0.018182 0.836364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTRCCAT MEME-1 regular expression -------------------------------------------------------------------------------- GTT[AG]CCAT -------------------------------------------------------------------------------- Time 1.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAACCGS MEME-2 width = 8 sites = 55 llr = 342 E-value = 3.6e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAACCGS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 129a:322 pos.-specific C :8::a524 probability G 9::::163 matrix T :::::111 bits 2.2 * 2.0 * 1.8 *** 1.6 * *** Relative 1.3 * *** Entropy 1.1 ***** (9.0 bits) 0.9 ***** 0.7 ***** 0.4 ***** 0.2 ******* 0.0 -------- Multilevel GCAACCGC consensus AAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACCGS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:58239137-58239157 1 2.58e-05 . GCAACCGC AGGCCGCCTG chr6:24360374-24360394 12 2.58e-05 TGTTTCCATA GCAACCGC A chr10:99393292-99393312 2 5.10e-05 G GCAACCGG GAGCAACGCC chr20:5639720-5639740 7 9.01e-05 CCCATG GCAACAGC CCTGAA chr14:102771475-10277149 11 1.29e-04 TGTCACCCTA GCAACCGT CA chr4:156298099-156298119 1 1.29e-04 . GCAACCAC CCAGACGAAG chr8:41997877-41997897 13 1.29e-04 CGTCACCATG GCAACCAC chr2:8615536-8615556 2 1.29e-04 G GCAACCGT GGAAGTCCTG chr19:30101789-30101809 3 1.48e-04 TG GCAACAGG CTGTTTGTCC chr6:36733805-36733825 3 1.48e-04 TG GCAACAGG CTAGCGGACC chrX:48774772-48774792 1 1.83e-04 . GCAACCAG TGACCTCTGC chr7:46018027-46018047 6 1.83e-04 TCTGG GCAACAGA AGAAGTC chr7:137846475-137846495 4 1.83e-04 ATG GCAACCAG CTACCCTTC chr6:25015583-25015603 1 1.83e-04 . GCAACAGA AATACACACC chr12:99525881-99525901 1 1.83e-04 . GCAACAGA AAATGTTGGT chr1:90092582-90092602 1 1.83e-04 . gcaaccag ctcccatcct chr8:94767020-94767040 1 2.47e-04 . GCAACCAA GCAACACGAG chr20:5827108-5827128 1 2.47e-04 . GCAACCAA GATCCAACTC chr20:17550664-17550684 1 2.99e-04 . GCAACGGC AGGCGGTGCG chr3:14186158-14186178 1 2.99e-04 . GCAACCCC AGTCTGTTTC chr11:8615545-8615565 1 2.99e-04 . GCAACGGC CTggccggct chr14:91716697-91716717 2 2.99e-04 G GCAACCCC TGTGGCCTAC chr19:1860231-1860251 1 2.99e-04 . GCAACGGC GTCAACATCA chr1:33199726-33199746 3 3.98e-04 TG GCAACCCG CCTCCGCCTT chr19:743371-743391 6 3.98e-04 GCTTA GCAACGGG CAGGTGA chr10:104172976-10417299 1 3.98e-04 . GCAACCCG GTCTCCCTGG chr2:238574554-238574574 2 4.58e-04 G GCAACTGC AGTCTGGCTT chr13:52380874-52380894 8 5.17e-04 TGTCATG GCAACACC AGCTG chr8:26324999-26325019 1 5.58e-04 . gaaaccac aataaaggct chr10:25305088-25305108 12 5.58e-04 GGTTGCCGTG GAAACCGT T chr2:232469575-232469595 1 6.68e-04 . GCAACTGG CCGGGCAGCT chr12:54653431-54653451 6 6.68e-04 CCATA GCAACTGG CAGCAGT chr20:328505-328525 1 6.68e-04 . GCAACCCT CGTCCCGGGT chr10:107597858-10759787 1 6.68e-04 . GCAACCTC TCATAGATGT chr9:6759320-6759340 2 6.68e-04 G GCAACGGT GACTAATATT chr22:37726674-37726694 9 7.28e-04 TCGCCATG GAAACCAG CCTT chr17:63175552-63175572 6 7.28e-04 CCATG GAAACAGA ATCCTCG chr13:49227758-49227778 3 7.28e-04 TG GAAACAGA AACCATTTAG chr17:64701159-64701179 1 7.28e-04 . GAAACCAG AGTACTTTCA chr5:159933857-159933877 9 7.81e-04 TCACCATG GCAACCTG CATC chr6:16301969-16301989 13 8.44e-04 tgtggttcat gaaacagt chr8:29743432-29743452 2 8.44e-04 G GCAACTGT TAATTAATTG chr19:46148680-46148700 1 1.00e-03 . GCAACGCC CTTCGTTCCA chr14:89960586-89960606 2 1.19e-03 G GAAACAAA CACAGCTAGG chr17:38375078-38375098 2 1.19e-03 G ACAACCGG AGCTTGACTA chr17:27068564-27068584 2 1.26e-03 G GAAACACC CTCCTGGCTG chr6:30035240-30035260 5 1.33e-03 CGTG ACAACCGA GCCCGTGA chr1:32254270-32254290 4 1.52e-03 ATA GCAACGTC CCTGGAGCC chr22:21400100-21400120 2 1.63e-03 G GCGACCGC CGCGGGAGAG chr17:41132526-41132546 4 1.63e-03 CAG GCCACCGC GCCGTTGCC chrX:102809916-102809936 10 1.63e-03 GTTACTATG GTAACCGC GAT chr3:32501846-32501866 2 1.68e-03 G GAAACACA GCAGGTCTTT chr19:58874255-58874275 4 2.20e-03 GGC GCCACAGC CAAGCTACT chr15:55700714-55700734 3 2.43e-03 CG GCGACCAC TTCCAGTTGC chr13:100648133-10064815 1 3.18e-03 . ACAACGGT GCTCCCCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACCGS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:58239137-58239157 2.6e-05 [+2]_12 chr6:24360374-24360394 2.6e-05 11_[+2]_1 chr10:99393292-99393312 5.1e-05 1_[+2]_11 chr20:5639720-5639740 9e-05 6_[+2]_6 chr14:102771475-10277149 0.00013 10_[+2]_2 chr4:156298099-156298119 0.00013 [+2]_12 chr8:41997877-41997897 0.00013 12_[+2] chr2:8615536-8615556 0.00013 1_[+2]_11 chr19:30101789-30101809 0.00015 2_[+2]_10 chr6:36733805-36733825 0.00015 2_[+2]_10 chrX:48774772-48774792 0.00018 [+2]_12 chr7:46018027-46018047 0.00018 5_[+2]_7 chr7:137846475-137846495 0.00018 3_[+2]_9 chr6:25015583-25015603 0.00018 [+2]_12 chr12:99525881-99525901 0.00018 [+2]_12 chr1:90092582-90092602 0.00018 [+2]_12 chr8:94767020-94767040 0.00025 [+2]_12 chr20:5827108-5827128 0.00025 [+2]_12 chr20:17550664-17550684 0.0003 [+2]_12 chr3:14186158-14186178 0.0003 [+2]_12 chr11:8615545-8615565 0.0003 [+2]_12 chr14:91716697-91716717 0.0003 1_[+2]_11 chr19:1860231-1860251 0.0003 [+2]_12 chr1:33199726-33199746 0.0004 2_[+2]_10 chr19:743371-743391 0.0004 5_[+2]_7 chr10:104172976-10417299 0.0004 [+2]_12 chr2:238574554-238574574 0.00046 1_[+2]_11 chr13:52380874-52380894 0.00052 7_[+2]_5 chr8:26324999-26325019 0.00056 [+2]_12 chr10:25305088-25305108 0.00056 11_[+2]_1 chr2:232469575-232469595 0.00067 [+2]_12 chr12:54653431-54653451 0.00067 5_[+2]_7 chr20:328505-328525 0.00067 [+2]_12 chr10:107597858-10759787 0.00067 [+2]_12 chr9:6759320-6759340 0.00067 1_[+2]_11 chr22:37726674-37726694 0.00073 8_[+2]_4 chr17:63175552-63175572 0.00073 5_[+2]_7 chr13:49227758-49227778 0.00073 2_[+2]_10 chr17:64701159-64701179 0.00073 [+2]_12 chr5:159933857-159933877 0.00078 8_[+2]_4 chr6:16301969-16301989 0.00084 12_[+2] chr8:29743432-29743452 0.00084 1_[+2]_11 chr19:46148680-46148700 0.001 [+2]_12 chr14:89960586-89960606 0.0012 1_[+2]_11 chr17:38375078-38375098 0.0012 1_[+2]_11 chr17:27068564-27068584 0.0013 1_[+2]_11 chr6:30035240-30035260 0.0013 4_[+2]_8 chr1:32254270-32254290 0.0015 3_[+2]_9 chr22:21400100-21400120 0.0016 1_[+2]_11 chr17:41132526-41132546 0.0016 3_[+2]_9 chrX:102809916-102809936 0.0016 9_[+2]_3 chr3:32501846-32501866 0.0017 1_[+2]_11 chr19:58874255-58874275 0.0022 3_[+2]_9 chr15:55700714-55700734 0.0024 2_[+2]_10 chr13:100648133-10064815 0.0032 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACCGS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAACCGS width=8 seqs=55 chr17:58239137-58239157 ( 1) GCAACCGC 1 chr6:24360374-24360394 ( 12) GCAACCGC 1 chr10:99393292-99393312 ( 2) GCAACCGG 1 chr20:5639720-5639740 ( 7) GCAACAGC 1 chr14:102771475-10277149 ( 11) GCAACCGT 1 chr4:156298099-156298119 ( 1) GCAACCAC 1 chr8:41997877-41997897 ( 13) GCAACCAC 1 chr2:8615536-8615556 ( 2) GCAACCGT 1 chr19:30101789-30101809 ( 3) GCAACAGG 1 chr6:36733805-36733825 ( 3) GCAACAGG 1 chrX:48774772-48774792 ( 1) GCAACCAG 1 chr7:46018027-46018047 ( 6) GCAACAGA 1 chr7:137846475-137846495 ( 4) GCAACCAG 1 chr6:25015583-25015603 ( 1) GCAACAGA 1 chr12:99525881-99525901 ( 1) GCAACAGA 1 chr1:90092582-90092602 ( 1) GCAACCAG 1 chr8:94767020-94767040 ( 1) GCAACCAA 1 chr20:5827108-5827128 ( 1) GCAACCAA 1 chr20:17550664-17550684 ( 1) GCAACGGC 1 chr3:14186158-14186178 ( 1) GCAACCCC 1 chr11:8615545-8615565 ( 1) GCAACGGC 1 chr14:91716697-91716717 ( 2) GCAACCCC 1 chr19:1860231-1860251 ( 1) GCAACGGC 1 chr1:33199726-33199746 ( 3) GCAACCCG 1 chr19:743371-743391 ( 6) GCAACGGG 1 chr10:104172976-10417299 ( 1) GCAACCCG 1 chr2:238574554-238574574 ( 2) GCAACTGC 1 chr13:52380874-52380894 ( 8) GCAACACC 1 chr8:26324999-26325019 ( 1) GAAACCAC 1 chr10:25305088-25305108 ( 12) GAAACCGT 1 chr2:232469575-232469595 ( 1) GCAACTGG 1 chr12:54653431-54653451 ( 6) GCAACTGG 1 chr20:328505-328525 ( 1) GCAACCCT 1 chr10:107597858-10759787 ( 1) GCAACCTC 1 chr9:6759320-6759340 ( 2) GCAACGGT 1 chr22:37726674-37726694 ( 9) GAAACCAG 1 chr17:63175552-63175572 ( 6) GAAACAGA 1 chr13:49227758-49227778 ( 3) GAAACAGA 1 chr17:64701159-64701179 ( 1) GAAACCAG 1 chr5:159933857-159933877 ( 9) GCAACCTG 1 chr6:16301969-16301989 ( 13) GAAACAGT 1 chr8:29743432-29743452 ( 2) GCAACTGT 1 chr19:46148680-46148700 ( 1) GCAACGCC 1 chr14:89960586-89960606 ( 2) GAAACAAA 1 chr17:38375078-38375098 ( 2) ACAACCGG 1 chr17:27068564-27068584 ( 2) GAAACACC 1 chr6:30035240-30035260 ( 5) ACAACCGA 1 chr1:32254270-32254290 ( 4) GCAACGTC 1 chr22:21400100-21400120 ( 2) GCGACCGC 1 chr17:41132526-41132546 ( 4) GCCACCGC 1 chrX:102809916-102809936 ( 10) GTAACCGC 1 chr3:32501846-32501866 ( 2) GAAACACA 1 chr19:58874255-58874275 ( 4) GCCACAGC 1 chr15:55700714-55700734 ( 3) GCGACCAC 1 chr13:100648133-10064815 ( 1) ACAACGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACCGS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.6795 E= 3.6e-014 -200 -1243 175 -1243 -26 147 -1243 -355 209 -298 -295 -1243 220 -1243 -1243 -1243 -1243 179 -1243 -1243 22 87 -95 -155 0 -82 101 -196 -26 47 -4 -55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACCGS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 3.6e-014 0.054545 0.000000 0.945455 0.000000 0.181818 0.800000 0.000000 0.018182 0.927273 0.036364 0.036364 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.254545 0.527273 0.145455 0.072727 0.218182 0.163636 0.563636 0.054545 0.181818 0.400000 0.272727 0.145455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACCGS MEME-2 regular expression -------------------------------------------------------------------------------- GCAAC[CA][GA][CG] -------------------------------------------------------------------------------- Time 2.56 secs. ******************************************************************************** ******************************************************************************** MOTIF YSSGTTGC MEME-3 width = 8 sites = 32 llr = 221 E-value = 4.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif YSSGTTGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:2:::2: pos.-specific C 542::::a probability G 244a::8: matrix T 322:aa:: bits 2.2 ** 2.0 ** 1.8 *** * 1.6 *** * Relative 1.3 *** * Entropy 1.1 ***** (10.0 bits) 0.9 ***** 0.7 ***** 0.4 * ***** 0.2 ** ***** 0.0 -------- Multilevel CCGGTTGC consensus TGC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSGTTGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:32621252-32621272 13 4.75e-05 GATGAGTTAG CGGGTTGC chr2:241771953-241771973 5 4.75e-05 CCGC CGGGTTGC CGGCTTCG chr19:18263420-18263440 13 8.26e-05 CCGGACGCTC TGGGTTGC chr17:8079715-8079735 12 1.56e-04 CAGGCACCGC CCAGTTGC C chr15:55700714-55700734 13 1.56e-04 GCGACCACTT CCAGTTGC chr15:73611312-73611332 12 1.56e-04 GACTCCCCGG CCAGTTGC C chr1:14849523-14849543 12 2.22e-04 ctaggccaca ctggttgc c chr9:135545819-135545839 4 2.22e-04 GGC CGCGTTGC CTGGCAACG chr19:55690797-55690817 13 2.22e-04 GAGAGCAAAG CTGGTTGC chr19:17866906-17866926 12 2.22e-04 TGCTAGGCGA CTGGTTGC C chr14:59656730-59656750 13 2.22e-04 CAAGATGAAT CCCGTTGC chr5:162196241-162196261 11 2.22e-04 AAACCGCAAT CTGGTTGC CA chr17:64188396-64188416 13 2.22e-04 TGCGCGCGGC CCCGTTGC chr2:55746753-55746773 11 2.95e-04 GGCGGCTACG TGTGTTGC CA chr1:206808812-206808832 13 2.95e-04 GGGGCGTGCC GCGGTTGC chrX:102024023-102024043 13 2.95e-04 CCAGTGCTAC GCGGTTGC chr11:62537466-62537486 12 2.95e-04 CTCCTTAGGT GGGGTTGC C chr16:19302901-19302921 12 2.95e-04 CGCTGATTGT TGTGTTGC C chr19:38705049-38705069 11 3.22e-04 TCCATTATAC TGAGTTGC CA chr14:77552819-77552839 11 3.22e-04 CTGTGCTGTG TGAGTTGC TA chr17:7118017-7118037 13 4.71e-04 TCAGTCGTCG CCGGTTAC chr1:15573704-15573724 12 6.00e-04 GGCGCCTGGC GGCGTTGC C chr3:12525963-12525983 13 6.00e-04 CCCCACGGCC GGCGTTGC chr14:77393236-77393256 11 6.00e-04 GCTCACATGT GTGGTTGC TT chr17:41132526-41132546 12 6.00e-04 AGGCCACCGC GCCGTTGC C chr20:8000492-8000512 5 6.37e-04 GGTG TCGGTTAC CTCAGCAA chr16:29675646-29675666 13 7.15e-04 CACTGGACCC CCTGTTAC chr3:167098114-167098134 5 8.08e-04 TTAC CGCGTTAC CTCGGTAC chr18:33103994-33104014 11 8.78e-04 TCAGTGTGCC TGTGTTAC CA chr10:133575639-13357565 8 9.17e-04 TGTGTTT TCAGTTAC CCGTG chr1:98293632-98293652 11 9.82e-04 CACATCTGTG ACTGTTGC TA chr6:141785838-141785858 12 9.82e-04 TGTTACTGCC ACTGTTGC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSGTTGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:32621252-32621272 4.8e-05 12_[+3] chr2:241771953-241771973 4.8e-05 4_[+3]_8 chr19:18263420-18263440 8.3e-05 12_[+3] chr17:8079715-8079735 0.00016 11_[+3]_1 chr15:55700714-55700734 0.00016 12_[+3] chr15:73611312-73611332 0.00016 11_[+3]_1 chr1:14849523-14849543 0.00022 11_[+3]_1 chr9:135545819-135545839 0.00022 3_[+3]_9 chr19:55690797-55690817 0.00022 12_[+3] chr19:17866906-17866926 0.00022 11_[+3]_1 chr14:59656730-59656750 0.00022 12_[+3] chr5:162196241-162196261 0.00022 10_[+3]_2 chr17:64188396-64188416 0.00022 12_[+3] chr2:55746753-55746773 0.00029 10_[+3]_2 chr1:206808812-206808832 0.00029 12_[+3] chrX:102024023-102024043 0.00029 12_[+3] chr11:62537466-62537486 0.00029 11_[+3]_1 chr16:19302901-19302921 0.00029 11_[+3]_1 chr19:38705049-38705069 0.00032 10_[+3]_2 chr14:77552819-77552839 0.00032 10_[+3]_2 chr17:7118017-7118037 0.00047 12_[+3] chr1:15573704-15573724 0.0006 11_[+3]_1 chr3:12525963-12525983 0.0006 12_[+3] chr14:77393236-77393256 0.0006 10_[+3]_2 chr17:41132526-41132546 0.0006 11_[+3]_1 chr20:8000492-8000512 0.00064 4_[+3]_8 chr16:29675646-29675666 0.00071 12_[+3] chr3:167098114-167098134 0.00081 4_[+3]_8 chr18:33103994-33104014 0.00088 10_[+3]_2 chr10:133575639-13357565 0.00092 7_[+3]_5 chr1:98293632-98293652 0.00098 10_[+3]_2 chr6:141785838-141785858 0.00098 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSGTTGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YSSGTTGC width=8 seqs=32 chr18:32621252-32621272 ( 13) CGGGTTGC 1 chr2:241771953-241771973 ( 5) CGGGTTGC 1 chr19:18263420-18263440 ( 13) TGGGTTGC 1 chr17:8079715-8079735 ( 12) CCAGTTGC 1 chr15:55700714-55700734 ( 13) CCAGTTGC 1 chr15:73611312-73611332 ( 12) CCAGTTGC 1 chr1:14849523-14849543 ( 12) CTGGTTGC 1 chr9:135545819-135545839 ( 4) CGCGTTGC 1 chr19:55690797-55690817 ( 13) CTGGTTGC 1 chr19:17866906-17866926 ( 12) CTGGTTGC 1 chr14:59656730-59656750 ( 13) CCCGTTGC 1 chr5:162196241-162196261 ( 11) CTGGTTGC 1 chr17:64188396-64188416 ( 13) CCCGTTGC 1 chr2:55746753-55746773 ( 11) TGTGTTGC 1 chr1:206808812-206808832 ( 13) GCGGTTGC 1 chrX:102024023-102024043 ( 13) GCGGTTGC 1 chr11:62537466-62537486 ( 12) GGGGTTGC 1 chr16:19302901-19302921 ( 12) TGTGTTGC 1 chr19:38705049-38705069 ( 11) TGAGTTGC 1 chr14:77552819-77552839 ( 11) TGAGTTGC 1 chr17:7118017-7118037 ( 13) CCGGTTAC 1 chr1:15573704-15573724 ( 12) GGCGTTGC 1 chr3:12525963-12525983 ( 13) GGCGTTGC 1 chr14:77393236-77393256 ( 11) GTGGTTGC 1 chr17:41132526-41132546 ( 12) GCCGTTGC 1 chr20:8000492-8000512 ( 5) TCGGTTAC 1 chr16:29675646-29675666 ( 13) CCTGTTAC 1 chr3:167098114-167098134 ( 5) CGCGTTAC 1 chr18:33103994-33104014 ( 11) TGTGTTAC 1 chr10:133575639-13357565 ( 8) TCAGTTAC 1 chr1:98293632-98293652 ( 11) ACTGTTGC 1 chr6:141785838-141785858 ( 12) ACTGTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSGTTGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.65195 E= 4.5e-005 -180 70 -36 23 -1164 60 53 -45 -22 -40 53 -18 -1164 -1164 183 -1164 -1164 -1164 -1164 223 -1164 -1164 -1164 223 -22 -1164 153 -1164 -1164 179 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSGTTGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.5e-005 0.062500 0.468750 0.218750 0.250000 0.000000 0.437500 0.406250 0.156250 0.187500 0.218750 0.406250 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.187500 0.000000 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSGTTGC MEME-3 regular expression -------------------------------------------------------------------------------- [CTG][CG][GC]GTTGC -------------------------------------------------------------------------------- Time 5.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TTATCACT MEME-4 width = 8 sites = 4 llr = 45 E-value = 2.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTATCACT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:3a:: pos.-specific C ::::8:a: probability G :::::::: matrix T aa:a:::a bits 2.2 **** * * 2.0 **** * * 1.8 **** *** 1.6 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTATCACT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCACT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:129486261-129486281 9 8.11e-06 TCCTAGCA TTATCACT CAGC chr2:118444487-118444507 5 8.11e-06 CTAA TTATCACT TATGTATC chr1:169056472-169056492 5 8.11e-06 gctg ttatcact gttACCAT chr1:116802403-116802423 6 1.43e-05 GTAAA TTATAACT TCACTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCACT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:129486261-129486281 8.1e-06 8_[+4]_4 chr2:118444487-118444507 8.1e-06 4_[+4]_8 chr1:169056472-169056492 8.1e-06 4_[+4]_8 chr1:116802403-116802423 1.4e-05 5_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCACT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTATCACT width=8 seqs=4 chr9:129486261-129486281 ( 9) TTATCACT 1 chr2:118444487-118444507 ( 5) TTATCACT 1 chr1:169056472-169056492 ( 5) TTATCACT 1 chr1:116802403-116802423 ( 6) TTATAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCACT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 2.2e+002 -865 -865 -865 223 -865 -865 -865 223 219 -865 -865 -865 -865 -865 -865 223 20 138 -865 -865 219 -865 -865 -865 -865 179 -865 -865 -865 -865 -865 223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCACT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.2e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCACT MEME-4 regular expression -------------------------------------------------------------------------------- TTAT[CA]ACT -------------------------------------------------------------------------------- Time 8.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TCRCCATG MEME-5 width = 8 sites = 6 llr = 63 E-value = 5.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCRCCATG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::7::a:: pos.-specific C :a:aa::: probability G ::3::::a matrix T a:::::a: bits 2.2 * ** 2.0 * ** 1.8 ** ***** 1.6 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCACCATG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCRCCATG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:46941534-46941554 3 1.45e-05 CA TCACCATG GTAACTATTA chr5:155829851-155829871 1 1.45e-05 . tcaccatg gttaccgcgt chr16:70843557-70843577 1 1.45e-05 . TCACCATG ACAACGAAGC chr5:159933857-159933877 1 1.45e-05 . TCACCATG GCAACCTGCA chr22:37726674-37726694 1 3.31e-05 . TCGCCATG GAAACCAGCC chr12:76209339-76209359 2 3.31e-05 G TCGCCATG GTTACCATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCRCCATG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:46941534-46941554 1.4e-05 2_[+5]_10 chr5:155829851-155829871 1.4e-05 [+5]_12 chr16:70843557-70843577 1.4e-05 [+5]_12 chr5:159933857-159933877 1.4e-05 [+5]_12 chr22:37726674-37726694 3.3e-05 [+5]_12 chr12:76209339-76209359 3.3e-05 1_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCRCCATG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCRCCATG width=8 seqs=6 chr11:46941534-46941554 ( 3) TCACCATG 1 chr5:155829851-155829871 ( 1) TCACCATG 1 chr16:70843557-70843577 ( 1) TCACCATG 1 chr5:159933857-159933877 ( 1) TCACCATG 1 chr22:37726674-37726694 ( 1) TCGCCATG 1 chr12:76209339-76209359 ( 2) TCGCCATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCRCCATG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.52677 E= 5.6e+001 -923 -923 -923 223 -923 179 -923 -923 161 -923 25 -923 -923 179 -923 -923 -923 179 -923 -923 220 -923 -923 -923 -923 -923 -923 223 -923 -923 183 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCRCCATG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 5.6e+001 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCRCCATG MEME-5 regular expression -------------------------------------------------------------------------------- TC[AG]CCATG -------------------------------------------------------------------------------- Time 11.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:126734285-126734305 9.73e-01 20 chrX:133682434-133682454 9.02e-01 20 chr17:70927449-70927469 7.96e-01 20 chr10:104172976-10417299 3.88e-04 20 chr11:130701712-13070173 5.07e-01 20 chr13:31648262-31648282 2.24e-03 20 chr17:30406949-30406969 5.85e-01 20 chr2:70017651-70017671 4.28e-01 20 chr1:169056472-169056492 2.84e-07 4_[+4(8.11e-06)]_[+1(1.07e-05)] chr4:114957785-114957805 8.71e-04 20 chr7:25902637-25902657 7.21e-01 20 chr19:1860231-1860251 3.89e-03 20 chr20:5695374-5695394 3.25e-06 8_[+1(1.07e-05)]_4 chr20:5639720-5639740 4.53e-02 6_[+2(9.01e-05)]_6 chr12:89560440-89560460 3.97e-01 20 chr4:87281258-87281278 9.41e-01 20 chr2:132285438-132285458 1.15e-01 20 chr14:77552819-77552839 1.61e-01 20 chrX:49605524-49605544 3.39e-01 20 chr1:90092582-90092602 9.63e-03 20 chr7:100087644-100087664 9.99e-01 20 chr1:116802403-116802423 1.10e-02 5_[+4(1.43e-05)]_7 chr9:129482127-129482147 5.51e-03 12_[+1(3.50e-05)] chr17:57643523-57643543 1.99e-02 20 chr1:182395673-182395693 3.07e-04 12_[+1(1.07e-05)] chr17:38375078-38375098 3.09e-01 20 chr4:47147798-47147818 2.79e-05 10_[+1(1.07e-05)]_2 chr7:20346924-20346944 3.01e-03 20 chr7:99699592-99699612 2.30e-01 20 chr20:5827108-5827128 1.13e-02 20 chr6:37253961-37253981 5.67e-01 20 chr1:15735960-15735980 3.76e-03 10_[+1(3.50e-05)]_2 chr16:19302901-19302921 1.24e-01 20 chr5:43193913-43193933 3.73e-01 20 chr1:153309333-153309353 2.80e-03 20 chr9:6759320-6759340 5.08e-02 20 chr10:107597858-10759787 1.51e-01 20 chr8:125700252-125700272 5.88e-04 5_[+1(3.50e-05)]_7 chr10:25305088-25305108 4.41e-03 20 chr12:99525881-99525901 1.20e-01 20 chr2:118444487-118444507 7.70e-03 4_[+4(8.11e-06)]_8 chr6:32941077-32941097 5.01e-04 12_[+1(2.45e-05)] chr8:29743432-29743452 1.93e-02 20 chr12:9066920-9066940 6.67e-01 20 chr2:8615536-8615556 2.10e-02 20 chr3:32501846-32501866 3.07e-01 20 chr2:241771953-241771973 1.47e-02 4_[+3(4.75e-05)]_8 chrX:133938050-133938070 5.37e-01 20 chr1:47697258-47697278 8.58e-01 20 chr2:74741190-74741210 9.32e-01 20 chr20:34652631-34652651 2.34e-02 20 chr5:159933857-159933877 5.54e-04 [+5(1.45e-05)]_12 chr12:120450295-12045031 3.14e-01 20 chr19:56098809-56098829 3.94e-01 20 chr3:167098114-167098134 4.01e-02 20 chr8:26324999-26325019 1.43e-01 20 chr3:38080693-38080713 8.59e-01 20 chr8:71085137-71085157 1.52e-02 20 chr12:85430098-85430118 4.17e-05 11_[+1(2.45e-05)]_1 chr17:64188396-64188416 1.36e-01 20 chr12:76478569-76478589 9.86e-01 20 chr3:50170339-50170359 1.61e-01 20 chr1:21525649-21525669 7.19e-04 7_[+1(4.59e-05)]_5 chr1:16494479-16494499 9.95e-01 20 chr2:238574554-238574574 1.03e-01 20 chrX:73197451-73197471 2.06e-02 20 chr6:141785838-141785858 9.18e-03 20 chr17:7118017-7118037 6.43e-02 20 chr10:3916086-3916106 8.90e-01 20 chr5:162196241-162196261 5.15e-02 20 chr12:14556829-14556849 6.06e-01 20 chr8:41997877-41997897 5.57e-07 4_[+5(1.45e-05)]_8 chr15:64889532-64889552 7.05e-01 20 chr8:70982305-70982325 8.93e-01 20 chr17:64701159-64701179 1.70e-01 20 chr10:26829716-26829736 1.67e-01 20 chr22:23487629-23487649 1.64e-01 20 chr14:59656730-59656750 2.33e-02 20 chr14:91716697-91716717 2.35e-02 20 chr14:58797927-58797947 2.09e-01 20 chr11:64388373-64388393 6.67e-01 20 chr16:70843557-70843577 4.03e-03 [+5(1.45e-05)]_12 chr19:743371-743391 5.47e-02 20 chrX:37853265-37853285 7.93e-01 20 chr12:48577337-48577357 2.83e-06 7_[+1(1.07e-05)]_5 chr2:16845698-16845718 3.97e-01 20 chr19:17866906-17866926 3.13e-02 20 chr1:155164704-155164724 4.62e-01 20 chr11:62537466-62537486 8.63e-02 20 chrX:102024023-102024043 1.53e-01 20 chr3:195920077-195920097 6.01e-01 20 chr7:100797545-100797565 7.42e-01 20 chr6:15427759-15427779 5.38e-01 20 chrX:102809916-102809936 1.38e-04 [+1(7.93e-05)]_12 chr16:29675646-29675666 5.99e-02 20 chr6:25015583-25015603 1.65e-01 20 chr6:32383732-32383752 9.98e-01 20 chr9:129486261-129486281 5.67e-03 8_[+4(8.11e-06)]_4 chr6:24360374-24360394 2.47e-05 2_[+1(3.50e-05)]_1_[+2(2.58e-05)]_1 chr17:7108224-7108244 4.36e-01 20 chr9:128508366-128508386 9.91e-01 20 chr11:8615545-8615565 2.96e-02 20 chr6:36733805-36733825 8.34e-02 20 chr2:64371781-64371801 4.39e-02 20 chr1:6639913-6639933 9.32e-01 20 chr6:30035240-30035260 2.93e-01 20 chr10:127585135-12758515 5.87e-01 20 chr5:88025360-88025380 1.18e-01 20 chr1:39564384-39564404 2.68e-04 1_[+1(4.59e-05)]_11 chr15:76632545-76632565 9.65e-01 20 chr12:122110560-12211058 9.09e-01 20 chr19:13958172-13958192 1.80e-01 20 chr16:13531081-13531101 9.41e-01 20 chr1:42928764-42928784 1.79e-01 20 chr17:9479933-9479953 2.06e-05 10_[+1(1.07e-05)]_2 chr16:1381915-1381935 8.82e-01 20 chr17:1957226-1957246 6.06e-01 20 chr15:90728509-90728529 9.98e-01 20 chr13:24554443-24554463 9.94e-01 20 chr7:137846475-137846495 5.40e-03 20 chr14:89960586-89960606 4.13e-01 20 chr19:46148680-46148700 1.14e-01 20 chr12:69555812-69555832 4.92e-01 20 chr11:130676832-13067685 6.94e-01 20 chr22:23484224-23484244 8.68e-01 20 chr8:60556492-60556512 4.46e-05 [+1(4.59e-05)]_12 chr3:14186158-14186178 2.22e-02 20 chr10:133575639-13357565 9.60e-04 20 chr12:76209339-76209359 1.66e-07 1_[+5(3.31e-05)]_[+1(1.07e-05)]_3 chr16:84628224-84628244 6.89e-01 20 chr12:15105390-15105410 5.79e-01 20 chr8:33540780-33540800 9.78e-01 20 chr19:17580360-17580380 7.69e-01 20 chr19:6393568-6393588 9.99e-01 20 chr1:161016599-161016619 2.41e-04 9_[+5(6.64e-05)]_3 chr17:45929857-45929877 1.19e-01 20 chr18:77905786-77905806 3.35e-01 20 chr19:18263420-18263440 5.98e-02 12_[+3(8.26e-05)] chr8:38243679-38243699 3.12e-01 20 chr5:155829851-155829871 3.00e-04 [+5(1.45e-05)]_12 chr7:100965075-100965095 7.83e-01 20 chr20:328505-328525 6.19e-03 20 chr14:24664475-24664495 4.51e-04 8_[+1(3.50e-05)]_4 chr12:54653431-54653451 1.15e-01 20 chr7:46018027-46018047 1.56e-01 20 chr13:49227758-49227778 5.82e-02 20 chr1:32254270-32254290 1.38e-01 20 chr2:54557979-54557999 8.86e-01 20 chr5:127040925-127040945 2.92e-03 20 chr17:63175552-63175572 3.41e-01 20 chr1:40349178-40349198 6.96e-01 20 chr14:52313706-52313726 3.77e-01 20 chr16:71598824-71598844 5.00e-03 20 chr19:58874255-58874275 3.19e-01 20 chr4:92210289-92210309 2.44e-04 9_[+1(4.59e-05)]_3 chr13:100648133-10064815 1.09e-01 20 chr6:22036686-22036706 4.88e-05 10_[+1(2.45e-05)]_2 chr17:58239137-58239157 2.73e-02 [+2(2.58e-05)]_12 chr14:50102021-50102041 3.16e-01 20 chr11:46941534-46941554 8.83e-06 2_[+5(1.45e-05)]_10 chr2:27193274-27193294 4.17e-01 20 chr9:86886591-86886611 2.24e-03 20 chr20:42365601-42365621 3.24e-05 8_[+1(2.45e-05)]_4 chr20:17550664-17550684 7.37e-02 20 chr10:76349192-76349212 3.32e-01 20 chr17:74137406-74137426 7.03e-01 20 chr19:55690797-55690817 1.37e-01 20 chr17:27068564-27068584 1.72e-01 20 chr14:77786736-77786756 5.66e-04 2_[+1(2.45e-05)]_10 chrX:117487304-117487324 2.09e-01 20 chr19:47250112-47250132 4.43e-03 20 chr9:135545819-135545839 1.80e-02 20 chr20:291151-291171 7.18e-01 20 chr1:111889216-111889236 2.57e-02 20 chr19:13842481-13842501 1.58e-03 20 chr19:38705049-38705069 7.07e-02 20 chr1:37979555-37979575 1.69e-02 20 chr16:4784830-4784850 5.60e-01 20 chr3:15837622-15837642 4.71e-01 20 chr7:102920723-102920743 9.65e-01 20 chr11:27384850-27384870 5.50e-01 20 chr1:27951467-27951487 4.33e-01 20 chrX:48774772-48774792 8.17e-03 20 chr5:34839236-34839256 4.31e-01 20 chr1:33199726-33199746 1.01e-01 20 chr18:32621252-32621272 1.30e-02 12_[+3(4.75e-05)] chr19:30101789-30101809 3.97e-02 20 chr15:73611312-73611332 1.57e-01 20 chr6:32145669-32145689 2.96e-05 1_[+5(1.45e-05)]_11 chr11:44633395-44633415 6.09e-01 20 chr22:25506863-25506883 9.56e-01 20 chr20:8000492-8000512 6.44e-02 20 chr1:12719200-12719220 4.53e-01 20 chr2:47143195-47143215 6.12e-01 20 chr16:72206373-72206393 8.73e-01 20 chr2:46137046-46137066 3.31e-05 11_[+1(2.45e-05)]_1 chr10:18713359-18713379 2.65e-01 20 chr6:16301969-16301989 1.37e-01 20 chr14:77506878-77506898 3.86e-01 20 chr17:41132526-41132546 2.48e-02 20 chr15:55700714-55700734 6.44e-03 20 chr4:156298099-156298119 5.87e-02 20 chr4:2043668-2043688 4.83e-01 20 chr10:26737793-26737813 1.05e-03 20 chr10:104434054-10443407 3.02e-01 20 chr7:156433426-156433446 8.13e-01 20 chr19:50528972-50528992 5.14e-02 20 chr8:125462518-125462538 1.08e-04 9_[+1(2.45e-05)]_3 chr17:62075690-62075710 4.98e-03 20 chr14:77393236-77393256 1.59e-01 20 chr20:11873052-11873072 2.00e-01 20 chr3:13115001-13115021 5.44e-01 20 chr2:170550927-170550947 8.68e-01 20 chr7:150710925-150710945 7.22e-01 20 chr1:98293632-98293652 3.09e-02 20 chr1:206808812-206808832 2.13e-01 20 chr11:95431385-95431405 9.69e-01 20 chr5:81046969-81046989 8.56e-01 20 chr6:64353985-64354005 5.24e-01 20 chr1:25848992-25849012 1.65e-02 20 chr3:12525963-12525983 1.40e-01 20 chr7:5490502-5490522 1.24e-01 20 chr14:102771475-10277149 6.84e-04 20 chr3:13493352-13493372 3.80e-04 20 chr1:14849523-14849543 1.95e-02 20 chr15:43803195-43803215 9.81e-01 20 chr22:21400100-21400120 4.38e-01 20 chr1:1004759-1004779 9.77e-01 20 chr2:55746753-55746773 1.42e-01 20 chr1:15573704-15573724 2.05e-01 20 chr2:47229889-47229909 9.87e-06 9_[+1(2.45e-05)]_3 chr22:24181041-24181061 1.09e-03 20 chr17:8079715-8079735 7.27e-02 20 chr10:99393292-99393312 3.08e-02 1_[+2(5.10e-05)]_11 chr17:41170495-41170515 6.12e-01 20 chr11:35187756-35187776 6.39e-01 20 chr19:3572559-3572579 9.91e-01 20 chr22:37726674-37726694 2.20e-03 [+5(3.31e-05)]_12 chr13:52380874-52380894 1.45e-01 20 chr8:94767020-94767040 2.16e-02 20 chr15:71185098-71185118 6.07e-01 20 chr19:36360357-36360377 2.98e-03 20 chr2:232469575-232469595 1.26e-01 20 chr17:36981292-36981312 9.14e-01 20 chr8:101464403-101464423 5.94e-01 20 chr15:82555147-82555167 6.00e-04 20 chr8:59323869-59323889 2.35e-03 20 chr8:133687851-133687871 9.87e-01 20 chr1:201123680-201123700 1.49e-01 20 chr18:33103994-33104014 1.30e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************