******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/BHLHE40.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr18:74840475-74840495 1.0000 20 chr5:1536563-1536583 1.0000 20 chr5:10608042-10608062 1.0000 20 chr1:11990038-11990058 1.0000 20 chr16:53584058-53584078 1.0000 20 chr19:3822086-3822106 1.0000 20 chr16:1660809-1660829 1.0000 20 chr10:88731174-88731194 1.0000 20 chr21:37915207-37915227 1.0000 20 chr2:65058559-65058579 1.0000 20 chr10:133795540-13379556 1.0000 20 chr22:31943148-31943168 1.0000 20 chr9:1837671-1837691 1.0000 20 chr19:40927230-40927250 1.0000 20 chr21:35356607-35356627 1.0000 20 chr8:139780071-139780091 1.0000 20 chr10:134266701-13426672 1.0000 20 chr5:139120202-139120222 1.0000 20 chr7:157180032-157180052 1.0000 20 chr18:45457926-45457946 1.0000 20 chr6:160403085-160403105 1.0000 20 chr5:179989920-179989940 1.0000 20 chr5:118058329-118058349 1.0000 20 chr2:232477343-232477363 1.0000 20 chr10:12095698-12095718 1.0000 20 chr10:80876758-80876778 1.0000 20 chr9:140046006-140046026 1.0000 20 chr13:33757066-33757086 1.0000 20 chr2:43397267-43397287 1.0000 20 chr10:114290881-11429090 1.0000 20 chr17:73098619-73098639 1.0000 20 chr8:102778183-102778203 1.0000 20 chr1:21023534-21023554 1.0000 20 chr22:41418665-41418685 1.0000 20 chr5:95066942-95066962 1.0000 20 chr20:4707795-4707815 1.0000 20 chr17:7739028-7739048 1.0000 20 chr11:118095779-11809579 1.0000 20 chr6:139351824-139351844 1.0000 20 chr17:79565641-79565661 1.0000 20 chr13:42853392-42853412 1.0000 20 chr11:72533749-72533769 1.0000 20 chr15:45684548-45684568 1.0000 20 chr11:117857954-11785797 1.0000 20 chr3:113666694-113666714 1.0000 20 chr3:114175742-114175762 1.0000 20 chr2:3246643-3246663 1.0000 20 chr3:193852893-193852913 1.0000 20 chr5:122303538-122303558 1.0000 20 chr15:72410545-72410565 1.0000 20 chr17:74178487-74178507 1.0000 20 chr8:23387114-23387134 1.0000 20 chr8:6594290-6594310 1.0000 20 chr3:66633322-66633342 1.0000 20 chr15:89020000-89020020 1.0000 20 chr21:32882140-32882160 1.0000 20 chr19:2698832-2698852 1.0000 20 chr7:128649641-128649661 1.0000 20 chr18:4455487-4455507 1.0000 20 chr6:28351193-28351213 1.0000 20 chr15:75495167-75495187 1.0000 20 chr7:87228788-87228808 1.0000 20 chr9:124041219-124041239 1.0000 20 chr1:226251153-226251173 1.0000 20 chr22:39707059-39707079 1.0000 20 chr22:17640163-17640183 1.0000 20 chr9:16459213-16459233 1.0000 20 chr19:39894656-39894676 1.0000 20 chr5:14666269-14666289 1.0000 20 chr16:14394894-14394914 1.0000 20 chr4:2292775-2292795 1.0000 20 chr22:36413840-36413860 1.0000 20 chr2:74211990-74212010 1.0000 20 chr12:50618302-50618322 1.0000 20 chr1:32817212-32817232 1.0000 20 chr1:19292326-19292346 1.0000 20 chr14:60798012-60798032 1.0000 20 chr10:102106291-10210631 1.0000 20 chr8:11416293-11416313 1.0000 20 chr3:125153465-125153485 1.0000 20 chr4:148701377-148701397 1.0000 20 chr20:19639009-19639029 1.0000 20 chr10:112289545-11228956 1.0000 20 chr5:111093908-111093928 1.0000 20 chr3:14473587-14473607 1.0000 20 chr19:45579741-45579761 1.0000 20 chr17:38024064-38024084 1.0000 20 chr19:42379657-42379677 1.0000 20 chr4:148700330-148700350 1.0000 20 chr16:78995565-78995585 1.0000 20 chr19:34850217-34850237 1.0000 20 chr4:77881300-77881320 1.0000 20 chr5:78531918-78531938 1.0000 20 chr12:26267454-26267474 1.0000 20 chr1:28382872-28382892 1.0000 20 chr13:40026069-40026089 1.0000 20 chr17:61523773-61523793 1.0000 20 chr1:207588046-207588066 1.0000 20 chr19:11090848-11090868 1.0000 20 chr17:40896450-40896470 1.0000 20 chr14:104145905-10414592 1.0000 20 chr8:103666347-103666367 1.0000 20 chr17:2394497-2394517 1.0000 20 chr22:39858934-39858954 1.0000 20 chr17:64196980-64197000 1.0000 20 chr4:170679209-170679229 1.0000 20 chr16:2345264-2345284 1.0000 20 chr13:99156740-99156760 1.0000 20 chr17:63053049-63053069 1.0000 20 chr5:1134762-1134782 1.0000 20 chr2:10054935-10054955 1.0000 20 chr16:71887490-71887510 1.0000 20 chr2:27488057-27488077 1.0000 20 chr7:1513867-1513887 1.0000 20 chr1:197151265-197151285 1.0000 20 chr1:226310401-226310421 1.0000 20 chr17:76149769-76149789 1.0000 20 chr17:56327231-56327251 1.0000 20 chr10:11653778-11653798 1.0000 20 chr6:149806119-149806139 1.0000 20 chr22:31318284-31318304 1.0000 20 chr1:24136403-24136423 1.0000 20 chr19:50963570-50963590 1.0000 20 chr1:26232991-26233011 1.0000 20 chr7:5270860-5270880 1.0000 20 chr7:128595063-128595083 1.0000 20 chr4:52772707-52772727 1.0000 20 chr19:49137813-49137833 1.0000 20 chr19:50037127-50037147 1.0000 20 chr21:44394182-44394202 1.0000 20 chr15:85458411-85458431 1.0000 20 chr17:30813503-30813523 1.0000 20 chr8:103819824-103819844 1.0000 20 chr2:153782529-153782549 1.0000 20 chr9:100395399-100395419 1.0000 20 chr1:182580670-182580690 1.0000 20 chr1:212732303-212732323 1.0000 20 chr17:53315763-53315783 1.0000 20 chr16:89638606-89638626 1.0000 20 chr1:27339465-27339485 1.0000 20 chr16:4524697-4524717 1.0000 20 chr11:70270428-70270448 1.0000 20 chr7:23636896-23636916 1.0000 20 chr5:158466145-158466165 1.0000 20 chr20:56056019-56056039 1.0000 20 chr19:30162793-30162813 1.0000 20 chr17:38252388-38252408 1.0000 20 chr13:25192764-25192784 1.0000 20 chr2:177797153-177797173 1.0000 20 chr10:27088433-27088453 1.0000 20 chr5:150226762-150226782 1.0000 20 chr2:73121320-73121340 1.0000 20 chr21:43288668-43288688 1.0000 20 chr20:42839611-42839631 1.0000 20 chr12:72148598-72148618 1.0000 20 chr20:61493495-61493515 1.0000 20 chr1:171454560-171454580 1.0000 20 chr18:72519226-72519246 1.0000 20 chr12:51582292-51582312 1.0000 20 chr1:55437078-55437098 1.0000 20 chr1:236230279-236230299 1.0000 20 chr1:108492684-108492704 1.0000 20 chr14:54955770-54955790 1.0000 20 chr1:225632726-225632746 1.0000 20 chr12:93503780-93503800 1.0000 20 chr7:100026948-100026968 1.0000 20 chr9:4971157-4971177 1.0000 20 chr5:137990131-137990151 1.0000 20 chr6:9521636-9521656 1.0000 20 chr20:10492395-10492415 1.0000 20 chr1:226216863-226216883 1.0000 20 chr14:76006051-76006071 1.0000 20 chr9:127048348-127048368 1.0000 20 chr5:132759598-132759618 1.0000 20 chr3:124553961-124553981 1.0000 20 chr14:102343086-10234310 1.0000 20 chr11:120894756-12089477 1.0000 20 chr9:112083415-112083435 1.0000 20 chr8:120660826-120660846 1.0000 20 chr1:181455172-181455192 1.0000 20 chr11:1543193-1543213 1.0000 20 chr19:47633975-47633995 1.0000 20 chr11:62691674-62691694 1.0000 20 chr10:102491027-10249104 1.0000 20 chr8:33411743-33411763 1.0000 20 chr1:110786442-110786462 1.0000 20 chr3:45595935-45595955 1.0000 20 chr13:29211075-29211095 1.0000 20 chr10:101945732-10194575 1.0000 20 chr8:96069321-96069341 1.0000 20 chr7:101457500-101457520 1.0000 20 chr8:28259600-28259620 1.0000 20 chr12:122124923-12212494 1.0000 20 chr8:56885772-56885792 1.0000 20 chr2:113033849-113033869 1.0000 20 chr14:62161971-62161991 1.0000 20 chr1:226189889-226189909 1.0000 20 chr19:6587530-6587550 1.0000 20 chr12:77443782-77443802 1.0000 20 chr7:41849872-41849892 1.0000 20 chr6:122720683-122720703 1.0000 20 chr20:25039105-25039125 1.0000 20 chr8:144631786-144631806 1.0000 20 chr22:43774602-43774622 1.0000 20 chr12:100967342-10096736 1.0000 20 chr6:167567351-167567371 1.0000 20 chr17:62208229-62208249 1.0000 20 chr17:80255525-80255545 1.0000 20 chr22:50329914-50329934 1.0000 20 chr2:64957892-64957912 1.0000 20 chr19:1568535-1568555 1.0000 20 chr1:31218429-31218449 1.0000 20 chr6:44144972-44144992 1.0000 20 chr19:36545345-36545365 1.0000 20 chr12:123921146-12392116 1.0000 20 chr10:6205770-6205790 1.0000 20 chr12:10242747-10242767 1.0000 20 chr9:137282660-137282680 1.0000 20 chr3:72397282-72397302 1.0000 20 chr1:65348779-65348799 1.0000 20 chr19:19145241-19145261 1.0000 20 chr1:226548272-226548292 1.0000 20 chr6:138132724-138132744 1.0000 20 chr11:35088827-35088847 1.0000 20 chr11:64126510-64126530 1.0000 20 chr2:158220924-158220944 1.0000 20 chr10:85939336-85939356 1.0000 20 chr2:62536982-62537002 1.0000 20 chr19:1269058-1269078 1.0000 20 chr4:40198551-40198571 1.0000 20 chr2:85146708-85146728 1.0000 20 chr22:31686847-31686867 1.0000 20 chr2:241519312-241519332 1.0000 20 chr16:2560107-2560127 1.0000 20 chr5:169083247-169083267 1.0000 20 chr22:40742765-40742785 1.0000 20 chr1:26799586-26799606 1.0000 20 chr8:131330003-131330023 1.0000 20 chr12:59990814-59990834 1.0000 20 chr19:36705361-36705381 1.0000 20 chr17:2126524-2126544 1.0000 20 chr9:133710115-133710135 1.0000 20 chr20:60697239-60697259 1.0000 20 chr6:157130363-157130383 1.0000 20 chr11:537334-537354 1.0000 20 chr14:76015701-76015721 1.0000 20 chr14:69152204-69152224 1.0000 20 chr6:13272903-13272923 1.0000 20 chr8:128191011-128191031 1.0000 20 chr1:206966673-206966693 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_BHLHE40/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/BHLHE40.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.199 C 0.315 G 0.299 T 0.187 Background letter frequencies (from file dataset with add-one prior applied): A 0.199 C 0.315 G 0.299 T 0.187 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KCACGTGM MEME-1 width = 8 sites = 98 llr = 739 E-value = 1.4e-119 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCACGTGM MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:9::::3 pos.-specific C :a1a:::6 probability G 6:::9:9: matrix T 3::::a11 bits 2.4 2.2 * 1.9 * 1.7 * Relative 1.5 ****** Entropy 1.2 ****** (10.9 bits) 1.0 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACGTGC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCACGTGM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:40742765-40742785 2 3.11e-05 A GCACGTGC CGGGCTCTGT chr20:25039105-25039125 11 3.11e-05 GCTGCCAGAG GCACGTGC GG chr10:101945732-10194575 13 3.11e-05 GCCCCCGCCC GCACGTGC chr8:33411743-33411763 7 3.11e-05 TATGAG GCACGTGC AGAGTA chr11:62691674-62691694 5 3.11e-05 cgtg gcacgtgc gtctgcaa chr12:51582292-51582312 12 3.11e-05 tgtgcgcgct gcacgtgc g chr5:158466145-158466165 7 3.11e-05 ATGCCT GCACGTGC TGGCTC chr7:23636896-23636916 11 3.11e-05 GCGGCTGGAA GCACGTGC CG chr16:4524697-4524717 11 3.11e-05 CCCGCCCCAG GCACGTGC AC chr9:100395399-100395419 7 3.11e-05 GGGGCG GCACGTGC GGCACC chr19:50037127-50037147 2 3.11e-05 A GCACGTGC AGGCCGAGGG chr1:26232991-26233011 7 3.11e-05 GCGGCG GCACGTGC CGCCCC chr10:11653778-11653798 12 3.11e-05 CTTCCCGGCG GCACGTGC G chr22:39858934-39858954 12 3.11e-05 ACAGACCTGT GCACGTGC C chr3:14473587-14473607 1 3.11e-05 . GCACGTGC ACCCTTAGCT chr9:124041219-124041239 3 3.11e-05 GT GCACGTGC ACGTATGTGT chr15:75495167-75495187 4 3.11e-05 GAT GCACGTGC GTCTCGGCG chr7:128649641-128649661 5 3.11e-05 TCag gcacgtgc cttgaatg chr17:74178487-74178507 4 3.11e-05 GGT GCACGTGC ATTCACATA chr17:7739028-7739048 9 3.11e-05 TGGGACCC GCACGTGC ACTC chr20:4707795-4707815 1 3.11e-05 . GCACGTGC AGCCACGTCA chr5:95066942-95066962 5 3.11e-05 GCTG GCACGTGC TGCGCCCG chr10:12095698-12095718 3 3.11e-05 GG GCACGTGC AACCCAGCGA chr2:65058559-65058579 1 3.11e-05 . GCACGTGC CACGTAAGGG chr21:37915207-37915227 4 3.11e-05 CCA GCACGTGC AAAATGCCT chr1:11990038-11990058 6 3.11e-05 CCACA GCACGTGC AGCACGT chr12:59990814-59990834 1 5.05e-05 . TCACGTGC GAACTGCCTG chr17:62208229-62208249 7 5.05e-05 CTTGTG TCACGTGC GTTGAT chr11:1543193-1543213 1 5.05e-05 . TCACGTGC AGTGCGTCTA chr2:177797153-177797173 12 5.05e-05 GGGGAAGCAT TCACGTGC C chr19:49137813-49137833 4 5.05e-05 GAG TCACGTGC TGACGCCTG chr3:125153465-125153485 3 5.05e-05 GC TCACGTGC AAATGACTGA chr1:21023534-21023554 3 5.05e-05 CG TCACGTGC AGCGCCCGAG chr2:232477343-232477363 11 5.05e-05 TGGGAGGTTC TCACGTGC CA chr6:160403085-160403105 5 5.05e-05 AAAC TCACGTGC TTCCCCAG chr14:69152204-69152224 6 7.02e-05 GCCTG GCACGTGA ACACATG chr6:157130363-157130383 4 7.02e-05 TTA GCACGTGA GAGCCACAT chr8:56885772-56885792 3 7.02e-05 GT GCACGTGA CAGCCTCACA chr3:124553961-124553981 2 7.02e-05 G GCACGTGA CTTGTTTACA chr5:132759598-132759618 13 7.02e-05 TGCACACAGC GCACGTGA chr1:225632726-225632746 4 7.02e-05 CAG GCACGTGA GCAGGAAGT chr14:54955770-54955790 7 7.02e-05 GGGCCG GCACGTGA TGGCGG chr17:40896450-40896470 4 7.02e-05 gac gcacgtga ggaggcgct chr4:148700330-148700350 3 7.02e-05 ct gcacgtga gaaccactgC chr8:6594290-6594310 3 7.02e-05 AT GCACGTGA GACCTGCTCA chr15:72410545-72410565 5 7.02e-05 CCCC GCACGTGA CGCCACTG chr8:128191011-128191031 8 8.25e-05 AGCCACA TCACGTGA GATAC chr22:43774602-43774622 3 8.25e-05 cc tcacgtga ttttcagttt chr19:47633975-47633995 3 8.25e-05 CG TCACGTGA CATGCAGTCG chr6:9521636-9521656 5 8.25e-05 CCAC TCACGTGA TTTTGCAT chr1:171454560-171454580 12 8.25e-05 CACGGAGGCT TCACGTGA T chr17:2394497-2394517 7 8.25e-05 TAGCTC TCACGTGA AAATCA chr5:122303538-122303558 4 8.25e-05 agc tcacgtga atggcagta chr13:33757066-33757086 10 8.25e-05 CACGTGcag tcacgtga agc chr9:133710115-133710135 4 1.01e-04 TGC GCACGTGT GGTTGTCCT chr17:2126524-2126544 4 1.01e-04 ACA GCACGTGT CCGGATTTC chr8:144631786-144631806 4 1.01e-04 CTG GCACGTGT GAAACTGGC chr1:226189889-226189909 10 1.01e-04 CACAGGAAG GCACGTGT GTG chr20:56056019-56056039 6 1.01e-04 ACCGT GCACGTGT GTCTGAG chr2:62536982-62537002 2 1.12e-04 T TCACGTGT GTTTCTCACA chr9:112083415-112083435 12 1.12e-04 GTAGGTGTGC TCACGTGT G chr7:87228788-87228808 9 1.12e-04 CATATGGC TCACGTGT GGGC chr19:36705361-36705381 13 1.33e-04 ACAGGCGGTT ACACGTGC chr11:120894756-12089477 11 1.33e-04 AGCGGACGTG ACACGTGC GG chr1:207588046-207588066 2 1.46e-04 c acacgtga gacatgagac chr6:44144972-44144992 7 1.66e-04 CCACAG GCACGTTC TGGACC chr1:226216863-226216883 9 1.90e-04 tccaaagg tcacgttc tttt chr4:52772707-52772727 8 1.90e-04 CTCAAAC ACACGTGT GTCCA chr9:16459213-16459233 7 1.90e-04 GTGCAA TCACGTTC TCCTAT chr10:114290881-11429090 13 2.44e-04 GCATGAACCC TCACATGC chr8:131330003-131330023 1 3.26e-04 . gcacatga ttgctgagta chr10:85939336-85939356 5 3.26e-04 CAAA GCCCGTGC ATCTGTCT chr9:137282660-137282680 4 3.26e-04 CCT GCACATGA CAGGCATCC chr3:45595935-45595955 12 3.26e-04 CCTGACAGAA GAACGTGC C chr1:28382872-28382892 12 3.26e-04 taagtctgtg gcccgtgc c chr8:139780071-139780091 3 3.26e-04 CT GCCCGTGC CTGACCACTC chr4:170679209-170679229 7 3.77e-04 GCCCAC TCCCGTGC TGGGCG chr19:40927230-40927250 7 3.77e-04 CCTGGG TCCCGTGC CAGGCC chr4:77881300-77881320 9 4.66e-04 GATTCTCC TCACGTTT GTCA chr10:112289545-11228956 11 4.66e-04 AGTCCCATAG TCCCGTGA CG chr10:80876758-80876778 6 4.66e-04 tccag tcacgttt gagtgtc chr5:111093908-111093928 2 5.46e-04 T GCGCGTGC ACACACACAC chr12:100967342-10096736 13 6.08e-04 CGCCCACGGG TCGCGTGC chr10:88731174-88731194 2 6.08e-04 C TCGCGTGC GGGAGACCCC chr5:169083247-169083267 2 6.66e-04 g gcacgaga cctcacattt chr19:6587530-6587550 7 6.66e-04 gCGTGC GCACGAGA CAGCGC chr1:226310401-226310421 13 7.81e-04 TGAGTCTCTG TCGCGTGA chr19:30162793-30162813 6 8.55e-04 TGTGT GCACGTGG TGGTGGT chr13:29211075-29211095 12 9.00e-04 AACCACCAGG GCAGGTGA C chr2:241519312-241519332 12 9.45e-04 TGACTCCACT CCACGTGC C chr16:89638606-89638626 12 1.06e-03 TGTGGCGTGT GCTCGTGC G chr9:4971157-4971177 12 1.16e-03 gctgtgtctc aaacgtgc c chr9:140046006-140046026 2 1.16e-03 G AAACGTGC CACCCAGGGA chr19:36545345-36545365 3 1.21e-03 GT GCACCTGC GCAAAGCCGG chr19:1568535-1568555 6 1.30e-03 CTGCT GCAGGTGT GTGCGGC chr4:2292775-2292795 8 1.43e-03 CCCCGGC ACACGAGC GGGAG chr5:137990131-137990151 4 1.44e-03 TGC ACACATGT GTGAGACAG chr12:10242747-10242767 3 1.70e-03 TA GCCCGTTA GTTCTACTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCACGTGM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:40742765-40742785 3.1e-05 1_[+1]_11 chr20:25039105-25039125 3.1e-05 10_[+1]_2 chr10:101945732-10194575 3.1e-05 12_[+1] chr8:33411743-33411763 3.1e-05 6_[+1]_6 chr11:62691674-62691694 3.1e-05 4_[+1]_8 chr12:51582292-51582312 3.1e-05 11_[+1]_1 chr5:158466145-158466165 3.1e-05 6_[+1]_6 chr7:23636896-23636916 3.1e-05 10_[+1]_2 chr16:4524697-4524717 3.1e-05 10_[+1]_2 chr9:100395399-100395419 3.1e-05 6_[+1]_6 chr19:50037127-50037147 3.1e-05 1_[+1]_11 chr1:26232991-26233011 3.1e-05 6_[+1]_6 chr10:11653778-11653798 3.1e-05 11_[+1]_1 chr22:39858934-39858954 3.1e-05 11_[+1]_1 chr3:14473587-14473607 3.1e-05 [+1]_12 chr9:124041219-124041239 3.1e-05 2_[+1]_10 chr15:75495167-75495187 3.1e-05 3_[+1]_9 chr7:128649641-128649661 3.1e-05 4_[+1]_8 chr17:74178487-74178507 3.1e-05 3_[+1]_9 chr17:7739028-7739048 3.1e-05 8_[+1]_4 chr20:4707795-4707815 3.1e-05 [+1]_12 chr5:95066942-95066962 3.1e-05 4_[+1]_8 chr10:12095698-12095718 3.1e-05 2_[+1]_10 chr2:65058559-65058579 3.1e-05 [+1]_12 chr21:37915207-37915227 3.1e-05 3_[+1]_9 chr1:11990038-11990058 3.1e-05 5_[+1]_7 chr12:59990814-59990834 5.1e-05 [+1]_12 chr17:62208229-62208249 5.1e-05 6_[+1]_6 chr11:1543193-1543213 5.1e-05 [+1]_12 chr2:177797153-177797173 5.1e-05 11_[+1]_1 chr19:49137813-49137833 5.1e-05 3_[+1]_9 chr3:125153465-125153485 5.1e-05 2_[+1]_10 chr1:21023534-21023554 5.1e-05 2_[+1]_10 chr2:232477343-232477363 5.1e-05 10_[+1]_2 chr6:160403085-160403105 5.1e-05 4_[+1]_8 chr14:69152204-69152224 7e-05 5_[+1]_7 chr6:157130363-157130383 7e-05 3_[+1]_9 chr8:56885772-56885792 7e-05 2_[+1]_10 chr3:124553961-124553981 7e-05 1_[+1]_11 chr5:132759598-132759618 7e-05 12_[+1] chr1:225632726-225632746 7e-05 3_[+1]_9 chr14:54955770-54955790 7e-05 6_[+1]_6 chr17:40896450-40896470 7e-05 3_[+1]_9 chr4:148700330-148700350 7e-05 2_[+1]_10 chr8:6594290-6594310 7e-05 2_[+1]_10 chr15:72410545-72410565 7e-05 4_[+1]_8 chr8:128191011-128191031 8.2e-05 7_[+1]_5 chr22:43774602-43774622 8.2e-05 2_[+1]_10 chr19:47633975-47633995 8.2e-05 2_[+1]_10 chr6:9521636-9521656 8.2e-05 4_[+1]_8 chr1:171454560-171454580 8.2e-05 11_[+1]_1 chr17:2394497-2394517 8.2e-05 6_[+1]_6 chr5:122303538-122303558 8.2e-05 3_[+1]_9 chr13:33757066-33757086 8.2e-05 9_[+1]_3 chr9:133710115-133710135 0.0001 3_[+1]_9 chr17:2126524-2126544 0.0001 3_[+1]_9 chr8:144631786-144631806 0.0001 3_[+1]_9 chr1:226189889-226189909 0.0001 9_[+1]_3 chr20:56056019-56056039 0.0001 5_[+1]_7 chr2:62536982-62537002 0.00011 1_[+1]_11 chr9:112083415-112083435 0.00011 11_[+1]_1 chr7:87228788-87228808 0.00011 8_[+1]_4 chr19:36705361-36705381 0.00013 12_[+1] chr11:120894756-12089477 0.00013 10_[+1]_2 chr1:207588046-207588066 0.00015 1_[+1]_11 chr6:44144972-44144992 0.00017 6_[+1]_6 chr1:226216863-226216883 0.00019 8_[+1]_4 chr4:52772707-52772727 0.00019 7_[+1]_5 chr9:16459213-16459233 0.00019 6_[+1]_6 chr10:114290881-11429090 0.00024 12_[+1] chr8:131330003-131330023 0.00033 [+1]_12 chr10:85939336-85939356 0.00033 4_[+1]_8 chr9:137282660-137282680 0.00033 3_[+1]_9 chr3:45595935-45595955 0.00033 11_[+1]_1 chr1:28382872-28382892 0.00033 11_[+1]_1 chr8:139780071-139780091 0.00033 2_[+1]_10 chr4:170679209-170679229 0.00038 6_[+1]_6 chr19:40927230-40927250 0.00038 6_[+1]_6 chr4:77881300-77881320 0.00047 8_[+1]_4 chr10:112289545-11228956 0.00047 10_[+1]_2 chr10:80876758-80876778 0.00047 5_[+1]_7 chr5:111093908-111093928 0.00055 1_[+1]_11 chr12:100967342-10096736 0.00061 12_[+1] chr10:88731174-88731194 0.00061 1_[+1]_11 chr5:169083247-169083267 0.00067 1_[+1]_11 chr19:6587530-6587550 0.00067 6_[+1]_6 chr1:226310401-226310421 0.00078 12_[+1] chr19:30162793-30162813 0.00085 5_[+1]_7 chr13:29211075-29211095 0.0009 11_[+1]_1 chr2:241519312-241519332 0.00094 11_[+1]_1 chr16:89638606-89638626 0.0011 11_[+1]_1 chr9:4971157-4971177 0.0012 11_[+1]_1 chr9:140046006-140046026 0.0012 1_[+1]_11 chr19:36545345-36545365 0.0012 2_[+1]_10 chr19:1568535-1568555 0.0013 5_[+1]_7 chr4:2292775-2292795 0.0014 7_[+1]_5 chr5:137990131-137990151 0.0014 3_[+1]_9 chr12:10242747-10242767 0.0017 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCACGTGM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCACGTGM width=8 seqs=98 chr22:40742765-40742785 ( 2) GCACGTGC 1 chr20:25039105-25039125 ( 11) GCACGTGC 1 chr10:101945732-10194575 ( 13) GCACGTGC 1 chr8:33411743-33411763 ( 7) GCACGTGC 1 chr11:62691674-62691694 ( 5) GCACGTGC 1 chr12:51582292-51582312 ( 12) GCACGTGC 1 chr5:158466145-158466165 ( 7) GCACGTGC 1 chr7:23636896-23636916 ( 11) GCACGTGC 1 chr16:4524697-4524717 ( 11) GCACGTGC 1 chr9:100395399-100395419 ( 7) GCACGTGC 1 chr19:50037127-50037147 ( 2) GCACGTGC 1 chr1:26232991-26233011 ( 7) GCACGTGC 1 chr10:11653778-11653798 ( 12) GCACGTGC 1 chr22:39858934-39858954 ( 12) GCACGTGC 1 chr3:14473587-14473607 ( 1) GCACGTGC 1 chr9:124041219-124041239 ( 3) GCACGTGC 1 chr15:75495167-75495187 ( 4) GCACGTGC 1 chr7:128649641-128649661 ( 5) GCACGTGC 1 chr17:74178487-74178507 ( 4) GCACGTGC 1 chr17:7739028-7739048 ( 9) GCACGTGC 1 chr20:4707795-4707815 ( 1) GCACGTGC 1 chr5:95066942-95066962 ( 5) GCACGTGC 1 chr10:12095698-12095718 ( 3) GCACGTGC 1 chr2:65058559-65058579 ( 1) GCACGTGC 1 chr21:37915207-37915227 ( 4) GCACGTGC 1 chr1:11990038-11990058 ( 6) GCACGTGC 1 chr12:59990814-59990834 ( 1) TCACGTGC 1 chr17:62208229-62208249 ( 7) TCACGTGC 1 chr11:1543193-1543213 ( 1) TCACGTGC 1 chr2:177797153-177797173 ( 12) TCACGTGC 1 chr19:49137813-49137833 ( 4) TCACGTGC 1 chr3:125153465-125153485 ( 3) TCACGTGC 1 chr1:21023534-21023554 ( 3) TCACGTGC 1 chr2:232477343-232477363 ( 11) TCACGTGC 1 chr6:160403085-160403105 ( 5) TCACGTGC 1 chr14:69152204-69152224 ( 6) GCACGTGA 1 chr6:157130363-157130383 ( 4) GCACGTGA 1 chr8:56885772-56885792 ( 3) GCACGTGA 1 chr3:124553961-124553981 ( 2) GCACGTGA 1 chr5:132759598-132759618 ( 13) GCACGTGA 1 chr1:225632726-225632746 ( 4) GCACGTGA 1 chr14:54955770-54955790 ( 7) GCACGTGA 1 chr17:40896450-40896470 ( 4) GCACGTGA 1 chr4:148700330-148700350 ( 3) GCACGTGA 1 chr8:6594290-6594310 ( 3) GCACGTGA 1 chr15:72410545-72410565 ( 5) GCACGTGA 1 chr8:128191011-128191031 ( 8) TCACGTGA 1 chr22:43774602-43774622 ( 3) TCACGTGA 1 chr19:47633975-47633995 ( 3) TCACGTGA 1 chr6:9521636-9521656 ( 5) TCACGTGA 1 chr1:171454560-171454580 ( 12) TCACGTGA 1 chr17:2394497-2394517 ( 7) TCACGTGA 1 chr5:122303538-122303558 ( 4) TCACGTGA 1 chr13:33757066-33757086 ( 10) TCACGTGA 1 chr9:133710115-133710135 ( 4) GCACGTGT 1 chr17:2126524-2126544 ( 4) GCACGTGT 1 chr8:144631786-144631806 ( 4) GCACGTGT 1 chr1:226189889-226189909 ( 10) GCACGTGT 1 chr20:56056019-56056039 ( 6) GCACGTGT 1 chr2:62536982-62537002 ( 2) TCACGTGT 1 chr9:112083415-112083435 ( 12) TCACGTGT 1 chr7:87228788-87228808 ( 9) TCACGTGT 1 chr19:36705361-36705381 ( 13) ACACGTGC 1 chr11:120894756-12089477 ( 11) ACACGTGC 1 chr1:207588046-207588066 ( 2) ACACGTGA 1 chr6:44144972-44144992 ( 7) GCACGTTC 1 chr1:226216863-226216883 ( 9) TCACGTTC 1 chr4:52772707-52772727 ( 8) ACACGTGT 1 chr9:16459213-16459233 ( 7) TCACGTTC 1 chr10:114290881-11429090 ( 13) TCACATGC 1 chr8:131330003-131330023 ( 1) GCACATGA 1 chr10:85939336-85939356 ( 5) GCCCGTGC 1 chr9:137282660-137282680 ( 4) GCACATGA 1 chr3:45595935-45595955 ( 12) GAACGTGC 1 chr1:28382872-28382892 ( 12) GCCCGTGC 1 chr8:139780071-139780091 ( 3) GCCCGTGC 1 chr4:170679209-170679229 ( 7) TCCCGTGC 1 chr19:40927230-40927250 ( 7) TCCCGTGC 1 chr4:77881300-77881320 ( 9) TCACGTTT 1 chr10:112289545-11228956 ( 11) TCCCGTGA 1 chr10:80876758-80876778 ( 6) TCACGTTT 1 chr5:111093908-111093928 ( 2) GCGCGTGC 1 chr12:100967342-10096736 ( 13) TCGCGTGC 1 chr10:88731174-88731194 ( 2) TCGCGTGC 1 chr5:169083247-169083267 ( 2) GCACGAGA 1 chr19:6587530-6587550 ( 7) GCACGAGA 1 chr1:226310401-226310421 ( 13) TCGCGTGA 1 chr19:30162793-30162813 ( 6) GCACGTGG 1 chr13:29211075-29211095 ( 12) GCAGGTGA 1 chr2:241519312-241519332 ( 12) CCACGTGC 1 chr16:89638606-89638626 ( 12) GCTCGTGC 1 chr9:4971157-4971177 ( 12) AAACGTGC 1 chr9:140046006-140046026 ( 2) AAACGTGC 1 chr19:36545345-36545365 ( 3) GCACCTGC 1 chr19:1568535-1568555 ( 6) GCAGGTGT 1 chr4:2292775-2292795 ( 8) ACACGAGC 1 chr5:137990131-137990151 ( 4) ACACATGT 1 chr12:10242747-10242767 ( 3) GCCCGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCACGTGM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.9542 E= 1.4e-119 -128 -495 98 76 -270 162 -1326 -1326 214 -214 -287 -419 -1326 164 -387 -1326 -228 -495 166 -1326 -270 -1326 -1326 238 -1326 -1326 165 -161 52 86 -487 -49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCACGTGM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 1.4e-119 0.081633 0.010204 0.591837 0.316327 0.030612 0.969388 0.000000 0.000000 0.877551 0.071429 0.040816 0.010204 0.000000 0.979592 0.020408 0.000000 0.040816 0.010204 0.948980 0.000000 0.030612 0.000000 0.000000 0.969388 0.000000 0.000000 0.938776 0.061224 0.285714 0.571429 0.010204 0.132653 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCACGTGM MEME-1 regular expression -------------------------------------------------------------------------------- [GT]CACGTG[CA] -------------------------------------------------------------------------------- Time 2.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-2 width = 8 sites = 14 llr = 129 E-value = 1.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9:a:919 pos.-specific C a19:919: probability G :::::::1 matrix T ::1:1::: bits 2.4 * 2.2 * 1.9 * * * * 1.7 ** * * * Relative 1.5 ** * * * Entropy 1.2 ******** (13.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:40198551-40198571 2 1.54e-05 G CACACACA CCCCCCTAAA chr2:73121320-73121340 10 1.54e-05 GTGAGTGCA CACACACA AAT chr17:64196980-64197000 2 1.54e-05 a cacacaca cacacacaca chr5:111093908-111093928 11 1.54e-05 TGCGCGTGCA CACACACA CG chr14:60798012-60798032 2 1.54e-05 G CACACACA CACACACACA chr13:42853392-42853412 8 1.54e-05 gcacacc cacacaca cacac chr22:31943148-31943168 10 1.54e-05 ACAGACACA CACACACA CCT chr18:74840475-74840495 3 1.54e-05 ac cacacaca cacacacaca chr22:36413840-36413860 13 4.90e-05 GAGCTTTTTA CATATACA chr10:27088433-27088453 2 6.05e-05 G CACATAAA ACTGCAGGTG chr6:139351824-139351844 5 6.05e-05 GTTT CATACAAA TACCACTC chr14:76006051-76006071 13 8.37e-05 CCTCCAGAAT CACACACG chr2:85146708-85146728 2 1.33e-04 a cccacaca TTGTTACCAC chr12:77443782-77443802 1 1.33e-04 . CACACCCA TCTCACATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:40198551-40198571 1.5e-05 1_[+2]_11 chr2:73121320-73121340 1.5e-05 9_[+2]_3 chr17:64196980-64197000 1.5e-05 1_[+2]_11 chr5:111093908-111093928 1.5e-05 10_[+2]_2 chr14:60798012-60798032 1.5e-05 1_[+2]_11 chr13:42853392-42853412 1.5e-05 7_[+2]_5 chr22:31943148-31943168 1.5e-05 9_[+2]_3 chr18:74840475-74840495 1.5e-05 2_[+2]_10 chr22:36413840-36413860 4.9e-05 12_[+2] chr10:27088433-27088453 6.1e-05 1_[+2]_11 chr6:139351824-139351844 6.1e-05 4_[+2]_8 chr14:76006051-76006071 8.4e-05 12_[+2] chr2:85146708-85146728 0.00013 1_[+2]_11 chr12:77443782-77443802 0.00013 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=14 chr4:40198551-40198571 ( 2) CACACACA 1 chr2:73121320-73121340 ( 10) CACACACA 1 chr17:64196980-64197000 ( 2) CACACACA 1 chr5:111093908-111093928 ( 11) CACACACA 1 chr14:60798012-60798032 ( 2) CACACACA 1 chr13:42853392-42853412 ( 8) CACACACA 1 chr22:31943148-31943168 ( 10) CACACACA 1 chr18:74840475-74840495 ( 3) CACACACA 1 chr22:36413840-36413860 ( 13) CATATACA 1 chr10:27088433-27088453 ( 2) CACATAAA 1 chr6:139351824-139351844 ( 5) CATACAAA 1 chr14:76006051-76006071 ( 13) CACACACG 1 chr2:85146708-85146728 ( 2) CCCACACA 1 chr12:77443782-77443802 ( 1) CACACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4605 E= 1.3e-005 -1045 166 -1045 -1045 222 -214 -1045 -1045 -1045 144 -1045 -39 233 -1045 -1045 -1045 -1045 144 -1045 -39 222 -214 -1045 -1045 -48 144 -1045 -1045 222 -1045 -206 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.3e-005 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 1.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.928571 0.071429 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 regular expression -------------------------------------------------------------------------------- CACACACA -------------------------------------------------------------------------------- Time 3.82 secs. ******************************************************************************** ******************************************************************************** MOTIF WKTCACGT MEME-3 width = 8 sites = 17 llr = 137 E-value = 5.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WKTCACGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4:1:a:1: pos.-specific C 2::a:a:: probability G 143:::8: matrix T 366:::2a bits 2.4 * * 2.2 * * 1.9 * * 1.7 *** * Relative 1.5 *** * Entropy 1.2 * *** * (11.6 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel ATTCACGT consensus TGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTCACGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:117857954-11785797 13 7.68e-06 GCAGTCAGCC ATTCACGT chr6:138132724-138132744 6 3.20e-05 CCGTG AGTCACGT CGTTGCT chr15:89020000-89020020 13 3.20e-05 AACAGATCAC AGTCACGT chr13:25192764-25192784 13 4.88e-05 agcgtgattc atgcacgt chr16:71887490-71887510 12 4.88e-05 cctctggctc tttcactt c chr5:1134762-1134782 9 4.88e-05 cccagcaa tttcactt ctgc chr15:45684548-45684568 13 4.88e-05 Ctgcatgtgt atgcacgt chr2:158220924-158220944 13 7.25e-05 atggtaagca tgtcacgt chr17:38024064-38024084 13 7.25e-05 GGCCTTTCTG CTTCACGT chr14:76015701-76015721 13 9.56e-05 GAAAAGCAGA GTTCACGT chr17:74178487-74178507 12 1.08e-04 GTGCACGTGC ATTCACAT A chr9:1837671-1837691 9 1.51e-04 CACATGGG CTTCACTT TCCC chr1:197151265-197151285 12 1.83e-04 GGTGAAGTAA ATACACGT G chr3:193852893-193852913 12 2.28e-04 TAAAACATCC TGGCACGT G chr17:79565641-79565661 12 2.28e-04 CCAGCAACCC CTGCACGT T chr10:133795540-13379556 13 2.28e-04 ggggtgcgtg tggcacgt chr17:56327231-56327251 13 2.61e-04 GCCACGTGGC GGTCACGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTCACGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:117857954-11785797 7.7e-06 12_[+3] chr6:138132724-138132744 3.2e-05 5_[+3]_7 chr15:89020000-89020020 3.2e-05 12_[+3] chr13:25192764-25192784 4.9e-05 12_[+3] chr16:71887490-71887510 4.9e-05 11_[+3]_1 chr5:1134762-1134782 4.9e-05 8_[+3]_4 chr15:45684548-45684568 4.9e-05 12_[+3] chr2:158220924-158220944 7.2e-05 12_[+3] chr17:38024064-38024084 7.2e-05 12_[+3] chr14:76015701-76015721 9.6e-05 12_[+3] chr17:74178487-74178507 0.00011 11_[+3]_1 chr9:1837671-1837691 0.00015 8_[+3]_4 chr1:197151265-197151285 0.00018 11_[+3]_1 chr3:193852893-193852913 0.00023 11_[+3]_1 chr17:79565641-79565661 0.00023 11_[+3]_1 chr10:133795540-13379556 0.00023 12_[+3] chr17:56327231-56327251 0.00026 12_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTCACGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WKTCACGT width=8 seqs=17 chr11:117857954-11785797 ( 13) ATTCACGT 1 chr6:138132724-138132744 ( 6) AGTCACGT 1 chr15:89020000-89020020 ( 13) AGTCACGT 1 chr13:25192764-25192784 ( 13) ATGCACGT 1 chr16:71887490-71887510 ( 12) TTTCACTT 1 chr5:1134762-1134782 ( 9) TTTCACTT 1 chr15:45684548-45684568 ( 13) ATGCACGT 1 chr2:158220924-158220944 ( 13) TGTCACGT 1 chr17:38024064-38024084 ( 13) CTTCACGT 1 chr14:76015701-76015721 ( 13) GTTCACGT 1 chr17:74178487-74178507 ( 12) ATTCACAT 1 chr9:1837671-1837691 ( 9) CTTCACTT 1 chr1:197151265-197151285 ( 12) ATACACGT 1 chr3:193852893-193852913 ( 12) TGGCACGT 1 chr17:79565641-79565661 ( 12) CTGCACGT 1 chr10:133795540-13379556 ( 13) TGGCACGT 1 chr17:56327231-56327251 ( 13) GGTCACGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTCACGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 5.8e-001 105 -84 -135 66 -1073 -1073 24 179 -175 -1073 -3 179 -1073 166 -1073 -1073 233 -1073 -1073 -1073 -1073 166 -1073 -1073 -175 -1073 135 -8 -1073 -1073 -1073 242 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTCACGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 5.8e-001 0.411765 0.176471 0.117647 0.294118 0.000000 0.000000 0.352941 0.647059 0.058824 0.000000 0.294118 0.647059 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.058824 0.000000 0.764706 0.176471 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTCACGT MEME-3 regular expression -------------------------------------------------------------------------------- [AT][TG][TG]CACGT -------------------------------------------------------------------------------- Time 4.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GTATGTGT MEME-4 width = 8 sites = 5 llr = 49 E-value = 7.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTATGTGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:8::::: pos.-specific C :2:::::: probability G 8::2a:a: matrix T :828:a:a bits 2.4 * * 2.2 * * 1.9 * * 1.7 * **** Relative 1.5 ******* Entropy 1.2 ******** (14.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTATGTGT consensus ACTG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATGTGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:128595063-128595083 6 6.50e-06 tgcgt gtatgtgt gtgtgcg chr9:124041219-124041239 13 6.50e-06 GCACGTGCAC GTATGTGT chr9:112083415-112083435 2 2.73e-05 T GTAGGTGT GCTCACGTGT chr15:45684548-45684568 5 3.83e-05 TTCt gcatgtgt atgcacgt chr19:2698832-2698852 9 4.24e-05 TGAGGGTA ATTTGTGT TTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATGTGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:128595063-128595083 6.5e-06 5_[+4]_7 chr9:124041219-124041239 6.5e-06 12_[+4] chr9:112083415-112083435 2.7e-05 1_[+4]_11 chr15:45684548-45684568 3.8e-05 4_[+4]_8 chr19:2698832-2698852 4.2e-05 8_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATGTGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTATGTGT width=8 seqs=5 chr7:128595063-128595083 ( 6) GTATGTGT 1 chr9:124041219-124041239 ( 13) GTATGTGT 1 chr9:112083415-112083435 ( 2) GTAGGTGT 1 chr15:45684548-45684568 ( 5) GCATGTGT 1 chr19:2698832-2698852 ( 9) ATTTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATGTGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.2866 E= 7.4e+003 1 -897 142 -897 -897 -66 -897 210 201 -897 -897 10 -897 -897 -58 210 -897 -897 174 -897 -897 -897 -897 242 -897 -897 174 -897 -897 -897 -897 242 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATGTGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.4e+003 0.200000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.800000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATGTGT MEME-4 regular expression -------------------------------------------------------------------------------- [GA][TC][AT][TG]GTGT -------------------------------------------------------------------------------- Time 5.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTTCWCA MEME-5 width = 8 sites = 3 llr = 34 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTTCWCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::3:a pos.-specific C ::::a:a: probability G a::::::: matrix T :aaa:7:: bits 2.4 *** * 2.2 *** * 1.9 *** * 1.7 ***** ** Relative 1.5 ******** Entropy 1.2 ******** (16.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTTTCTCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:62536982-62537002 10 7.22e-06 TTCACGTGT GTTTCTCA CAC chr8:102778183-102778203 1 7.22e-06 . GTTTCTCA TATAGAAAAC chr1:226548272-226548292 10 1.49e-05 CGTTCTGGG GTTTCACA GAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:62536982-62537002 7.2e-06 9_[+5]_3 chr8:102778183-102778203 7.2e-06 [+5]_12 chr1:226548272-226548292 1.5e-05 9_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTTCWCA width=8 seqs=3 chr2:62536982-62537002 ( 10) GTTTCTCA 1 chr8:102778183-102778203 ( 1) GTTTCTCA 1 chr1:226548272-226548292 ( 10) GTTTCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.5277 E= 2.6e+003 -823 -823 174 -823 -823 -823 -823 242 -823 -823 -823 242 -823 -823 -823 242 -823 166 -823 -823 74 -823 -823 183 -823 166 -823 -823 233 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTCWCA MEME-5 regular expression -------------------------------------------------------------------------------- GTTTC[TA]CA -------------------------------------------------------------------------------- Time 6.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:74840475-74840495 4.65e-02 2_[+2(1.54e-05)]_[+2(1.54e-05)]_2 chr5:1536563-1536583 3.95e-01 20 chr5:10608042-10608062 5.74e-01 20 chr1:11990038-11990058 7.90e-04 5_[+1(3.11e-05)]_7 chr16:53584058-53584078 8.95e-01 20 chr19:3822086-3822106 3.82e-01 20 chr16:1660809-1660829 8.45e-01 20 chr10:88731174-88731194 2.16e-01 20 chr21:37915207-37915227 9.59e-04 3_[+1(3.11e-05)]_9 chr2:65058559-65058579 1.33e-04 [+1(3.11e-05)]_12 chr10:133795540-13379556 6.71e-03 20 chr22:31943148-31943168 9.78e-03 5_[+2(1.54e-05)]_7 chr9:1837671-1837691 2.74e-03 20 chr19:40927230-40927250 5.69e-02 20 chr21:35356607-35356627 4.63e-01 20 chr8:139780071-139780091 1.30e-02 20 chr10:134266701-13426672 7.59e-01 20 chr5:139120202-139120222 1.53e-01 20 chr7:157180032-157180052 8.80e-01 20 chr18:45457926-45457946 6.30e-01 20 chr6:160403085-160403105 4.34e-04 4_[+1(5.05e-05)]_8 chr5:179989920-179989940 6.42e-01 20 chr5:118058329-118058349 5.28e-01 20 chr2:232477343-232477363 5.02e-05 10_[+1(5.05e-05)]_2 chr10:12095698-12095718 2.09e-04 2_[+1(3.11e-05)]_10 chr10:80876758-80876778 9.31e-06 3_[+3(3.20e-05)]_9 chr9:140046006-140046026 5.53e-02 20 chr13:33757066-33757086 1.66e-04 7_[+3(3.20e-05)]_5 chr2:43397267-43397287 9.64e-01 20 chr10:114290881-11429090 2.89e-03 20 chr17:73098619-73098639 5.47e-01 20 chr8:102778183-102778203 1.36e-04 [+5(7.22e-06)]_12 chr1:21023534-21023554 5.00e-04 2_[+1(5.05e-05)]_10 chr22:41418665-41418685 8.02e-01 20 chr5:95066942-95066962 2.92e-04 4_[+1(3.11e-05)]_8 chr20:4707795-4707815 4.34e-04 [+1(3.11e-05)]_12 chr17:7739028-7739048 4.97e-04 8_[+1(3.11e-05)]_4 chr11:118095779-11809579 3.55e-01 20 chr6:139351824-139351844 6.25e-04 4_[+2(6.05e-05)]_8 chr17:79565641-79565661 1.90e-02 20 chr13:42853392-42853412 4.53e-02 7_[+2(1.54e-05)]_5 chr11:72533749-72533769 1.70e-01 20 chr15:45684548-45684568 5.30e-05 4_[+4(3.83e-05)]_[+3(4.88e-05)] chr11:117857954-11785797 1.56e-03 12_[+3(7.68e-06)] chr3:113666694-113666714 9.73e-01 20 chr3:114175742-114175762 7.27e-01 20 chr2:3246643-3246663 1.39e-01 20 chr3:193852893-193852913 1.18e-01 20 chr5:122303538-122303558 3.83e-03 3_[+1(8.25e-05)]_9 chr15:72410545-72410565 9.07e-04 4_[+1(7.02e-05)]_8 chr17:74178487-74178507 1.00e-06 3_[+1(3.11e-05)]_9 chr8:23387114-23387134 1.66e-01 20 chr8:6594290-6594310 3.92e-05 [+3(4.88e-05)]_12 chr3:66633322-66633342 6.65e-01 20 chr15:89020000-89020020 7.23e-03 12_[+3(3.20e-05)] chr21:32882140-32882160 9.49e-01 20 chr19:2698832-2698852 3.69e-02 8_[+4(4.24e-05)]_4 chr7:128649641-128649661 8.86e-05 4_[+1(3.11e-05)]_8 chr18:4455487-4455507 9.96e-01 20 chr6:28351193-28351213 6.04e-01 20 chr15:75495167-75495187 2.17e-05 3_[+1(3.11e-05)]_9 chr7:87228788-87228808 1.04e-03 20 chr9:124041219-124041239 2.13e-07 2_[+1(3.11e-05)]_2_[+4(6.50e-06)] chr1:226251153-226251173 3.42e-01 20 chr22:39707059-39707079 4.19e-01 20 chr22:17640163-17640183 9.92e-01 20 chr9:16459213-16459233 2.42e-03 20 chr19:39894656-39894676 9.71e-01 20 chr5:14666269-14666289 1.76e-01 20 chr16:14394894-14394914 5.04e-01 20 chr4:2292775-2292795 4.41e-02 20 chr22:36413840-36413860 6.22e-04 12_[+2(4.90e-05)] chr2:74211990-74212010 9.52e-01 20 chr12:50618302-50618322 3.57e-01 20 chr1:32817212-32817232 6.20e-01 20 chr1:19292326-19292346 6.73e-01 20 chr14:60798012-60798032 4.53e-02 1_[+2(1.54e-05)]_[+2(1.54e-05)]_3 chr10:102106291-10210631 3.90e-01 20 chr8:11416293-11416313 4.98e-01 20 chr3:125153465-125153485 1.80e-03 2_[+1(5.05e-05)]_10 chr4:148701377-148701397 9.56e-01 20 chr20:19639009-19639029 3.87e-01 20 chr10:112289545-11228956 1.25e-02 20 chr5:111093908-111093928 1.51e-04 8_[+2(1.54e-05)]_4 chr3:14473587-14473607 3.92e-03 [+1(3.11e-05)]_12 chr19:45579741-45579761 9.89e-01 20 chr17:38024064-38024084 5.52e-03 12_[+3(7.25e-05)] chr19:42379657-42379677 3.25e-02 20 chr4:148700330-148700350 4.50e-04 2_[+1(7.02e-05)]_10 chr16:78995565-78995585 6.66e-01 20 chr19:34850217-34850237 2.27e-01 20 chr4:77881300-77881320 2.20e-05 12_[+5(4.63e-05)] chr5:78531918-78531938 4.66e-02 20 chr12:26267454-26267474 9.11e-03 20 chr1:28382872-28382892 6.21e-03 20 chr13:40026069-40026089 1.73e-01 20 chr17:61523773-61523793 9.53e-01 20 chr1:207588046-207588066 4.94e-03 20 chr19:11090848-11090868 6.70e-01 20 chr17:40896450-40896470 1.27e-03 3_[+1(7.02e-05)]_9 chr14:104145905-10414592 9.83e-01 20 chr8:103666347-103666367 7.31e-01 20 chr17:2394497-2394517 1.01e-03 6_[+1(8.25e-05)]_6 chr22:39858934-39858954 2.48e-04 11_[+1(3.11e-05)]_1 chr17:64196980-64197000 4.65e-02 1_[+2(1.54e-05)]_[+2(1.54e-05)]_3 chr4:170679209-170679229 3.26e-02 20 chr16:2345264-2345284 4.34e-01 20 chr13:99156740-99156760 2.27e-01 20 chr17:63053049-63053069 1.79e-01 20 chr5:1134762-1134782 1.18e-03 8_[+3(4.88e-05)]_4 chr2:10054935-10054955 5.60e-02 20 chr16:71887490-71887510 7.83e-03 11_[+3(4.88e-05)]_1 chr2:27488057-27488077 9.23e-01 20 chr7:1513867-1513887 8.97e-01 20 chr1:197151265-197151285 2.36e-02 20 chr1:226310401-226310421 2.78e-03 20 chr17:76149769-76149789 4.80e-01 20 chr17:56327231-56327251 3.60e-02 20 chr10:11653778-11653798 1.57e-04 11_[+1(3.11e-05)]_1 chr6:149806119-149806139 2.92e-01 20 chr22:31318284-31318304 6.80e-01 20 chr1:24136403-24136423 4.41e-01 20 chr19:50963570-50963590 5.44e-01 20 chr1:26232991-26233011 4.67e-04 6_[+1(3.11e-05)]_6 chr7:5270860-5270880 1.19e-01 20 chr7:128595063-128595083 1.02e-02 5_[+4(6.50e-06)]_7 chr4:52772707-52772727 1.70e-05 20 chr19:49137813-49137833 1.44e-04 1_[+3(3.20e-05)]_11 chr19:50037127-50037147 6.00e-03 1_[+1(3.11e-05)]_11 chr21:44394182-44394202 1.32e-01 20 chr15:85458411-85458431 8.79e-02 20 chr17:30813503-30813523 9.87e-01 20 chr8:103819824-103819844 9.10e-02 20 chr2:153782529-153782549 4.95e-01 20 chr9:100395399-100395419 2.48e-04 6_[+1(3.11e-05)]_6 chr1:182580670-182580690 7.97e-02 20 chr1:212732303-212732323 8.60e-01 20 chr17:53315763-53315783 7.54e-01 20 chr16:89638606-89638626 3.08e-02 20 chr1:27339465-27339485 2.39e-01 20 chr16:4524697-4524717 1.04e-04 10_[+1(3.11e-05)]_2 chr11:70270428-70270448 5.17e-02 20 chr7:23636896-23636916 1.39e-03 10_[+1(3.11e-05)]_2 chr5:158466145-158466165 7.89e-05 6_[+1(3.11e-05)]_6 chr20:56056019-56056039 3.78e-06 20 chr19:30162793-30162813 5.15e-03 20 chr17:38252388-38252408 7.09e-02 20 chr13:25192764-25192784 7.24e-04 12_[+3(4.88e-05)] chr2:177797153-177797173 5.52e-06 9_[+3(7.68e-06)]_3 chr10:27088433-27088453 2.30e-04 1_[+2(6.05e-05)]_11 chr5:150226762-150226782 8.29e-01 20 chr2:73121320-73121340 3.25e-03 7_[+2(1.54e-05)]_5 chr21:43288668-43288688 6.31e-02 20 chr20:42839611-42839631 3.48e-01 20 chr12:72148598-72148618 9.76e-01 20 chr20:61493495-61493515 6.43e-02 20 chr1:171454560-171454580 7.78e-05 9_[+3(7.25e-05)]_3 chr18:72519226-72519246 9.62e-01 20 chr12:51582292-51582312 9.67e-05 11_[+1(3.11e-05)]_1 chr1:55437078-55437098 4.89e-02 20 chr1:236230279-236230299 2.86e-01 20 chr1:108492684-108492704 1.62e-01 20 chr14:54955770-54955790 7.93e-04 6_[+1(7.02e-05)]_6 chr1:225632726-225632746 2.23e-04 3_[+1(7.02e-05)]_9 chr12:93503780-93503800 9.42e-01 20 chr7:100026948-100026968 7.09e-01 20 chr9:4971157-4971177 1.84e-03 20 chr5:137990131-137990151 6.44e-05 5_[+4(5.66e-05)]_7 chr6:9521636-9521656 6.50e-05 4_[+1(8.25e-05)]_8 chr20:10492395-10492415 6.87e-01 20 chr1:226216863-226216883 1.90e-03 20 chr14:76006051-76006071 1.04e-02 12_[+2(8.37e-05)] chr9:127048348-127048368 9.82e-01 20 chr5:132759598-132759618 2.24e-04 12_[+1(7.02e-05)] chr3:124553961-124553981 7.89e-04 1_[+1(7.02e-05)]_11 chr14:102343086-10234310 3.48e-02 20 chr11:120894756-12089477 6.59e-04 20 chr9:112083415-112083435 1.89e-05 1_[+4(2.73e-05)]_11 chr8:120660826-120660846 5.09e-02 20 chr1:181455172-181455192 9.59e-02 20 chr11:1543193-1543213 5.42e-03 [+1(5.05e-05)]_12 chr19:47633975-47633995 5.57e-04 2_[+1(8.25e-05)]_10 chr11:62691674-62691694 9.67e-05 4_[+1(3.11e-05)]_8 chr10:102491027-10249104 2.89e-01 20 chr8:33411743-33411763 8.50e-05 6_[+1(3.11e-05)]_6 chr1:110786442-110786462 1.22e-01 20 chr3:45595935-45595955 2.01e-02 20 chr13:29211075-29211095 7.05e-03 20 chr10:101945732-10194575 6.37e-04 12_[+1(3.11e-05)] chr8:96069321-96069341 2.28e-01 20 chr7:101457500-101457520 9.73e-01 20 chr8:28259600-28259620 6.41e-01 20 chr12:122124923-12212494 2.64e-01 20 chr8:56885772-56885792 4.43e-05 2_[+1(7.02e-05)]_10 chr2:113033849-113033869 9.98e-01 20 chr14:62161971-62161991 3.83e-01 20 chr1:226189889-226189909 3.28e-05 20 chr19:6587530-6587550 1.23e-01 20 chr12:77443782-77443802 1.77e-03 20 chr7:41849872-41849892 1.94e-01 20 chr6:122720683-122720703 5.48e-01 20 chr20:25039105-25039125 1.38e-04 10_[+1(3.11e-05)]_2 chr8:144631786-144631806 4.44e-05 20 chr22:43774602-43774622 3.46e-04 2_[+1(8.25e-05)]_10 chr12:100967342-10096736 3.06e-02 20 chr6:167567351-167567371 3.75e-01 20 chr17:62208229-62208249 1.68e-05 6_[+1(5.05e-05)]_6 chr17:80255525-80255545 6.36e-01 20 chr22:50329914-50329934 9.97e-01 20 chr2:64957892-64957912 5.42e-01 20 chr19:1568535-1568555 9.40e-04 5_[+4(9.42e-05)]_7 chr1:31218429-31218449 3.29e-01 20 chr6:44144972-44144992 3.94e-04 20 chr19:36545345-36545365 4.62e-02 20 chr12:123921146-12392116 9.70e-01 20 chr10:6205770-6205790 7.04e-01 20 chr12:10242747-10242767 8.79e-02 20 chr9:137282660-137282680 5.01e-04 20 chr3:72397282-72397302 6.12e-01 20 chr1:65348779-65348799 5.74e-01 20 chr19:19145241-19145261 3.85e-01 20 chr1:226548272-226548292 2.31e-03 9_[+5(1.49e-05)]_3 chr6:138132724-138132744 1.02e-02 5_[+3(3.20e-05)]_7 chr11:35088827-35088847 2.91e-01 20 chr11:64126510-64126530 8.66e-01 20 chr2:158220924-158220944 3.40e-03 12_[+3(7.25e-05)] chr10:85939336-85939356 2.98e-03 20 chr2:62536982-62537002 5.46e-06 9_[+5(7.22e-06)]_3 chr19:1269058-1269078 1.01e-01 20 chr4:40198551-40198571 4.36e-02 1_[+2(1.54e-05)]_11 chr2:85146708-85146728 8.71e-03 20 chr22:31686847-31686867 9.99e-01 20 chr2:241519312-241519332 1.20e-02 20 chr16:2560107-2560127 6.17e-01 20 chr5:169083247-169083267 2.35e-02 20 chr22:40742765-40742785 1.40e-02 1_[+1(3.11e-05)]_11 chr1:26799586-26799606 8.98e-01 20 chr8:131330003-131330023 1.63e-02 20 chr12:59990814-59990834 2.74e-02 [+1(5.05e-05)]_12 chr19:36705361-36705381 9.21e-05 20 chr17:2126524-2126544 6.10e-04 20 chr9:133710115-133710135 3.27e-04 20 chr20:60697239-60697259 1.46e-01 20 chr6:157130363-157130383 1.07e-03 3_[+1(7.02e-05)]_9 chr11:537334-537354 5.96e-01 20 chr14:76015701-76015721 3.55e-02 12_[+3(9.56e-05)] chr14:69152204-69152224 1.92e-04 5_[+1(7.02e-05)]_7 chr6:13272903-13272923 5.79e-01 20 chr8:128191011-128191031 1.50e-03 7_[+1(8.25e-05)]_5 chr1:206966673-206966693 9.02e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************