******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/BCL11A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:13984220-13984240 1.0000 20 chr4:155954195-155954215 1.0000 20 chr10:103762861-10376288 1.0000 20 chr6:131831483-131831503 1.0000 20 chr11:5521846-5521866 1.0000 20 chr7:30220526-30220546 1.0000 20 chr16:79321104-79321124 1.0000 20 chr3:5470800-5470820 1.0000 20 chr4:157117257-157117277 1.0000 20 chr6:22082137-22082157 1.0000 20 chr4:151973667-151973687 1.0000 20 chr16:48222586-48222606 1.0000 20 chr5:107300575-107300595 1.0000 20 chr7:46098195-46098215 1.0000 20 chr8:64314672-64314692 1.0000 20 chr7:2208059-2208079 1.0000 20 chr3:156533998-156534018 1.0000 20 chr6:90790711-90790731 1.0000 20 chr1:249088007-249088027 1.0000 20 chr16:86152361-86152381 1.0000 20 chr20:14811337-14811357 1.0000 20 chr1:98955847-98955867 1.0000 20 chr6:37798142-37798162 1.0000 20 chr7:31851667-31851687 1.0000 20 chr8:100845418-100845438 1.0000 20 chr7:157143226-157143246 1.0000 20 chr7:25312086-25312106 1.0000 20 chr3:167969300-167969320 1.0000 20 chr1:90823701-90823721 1.0000 20 chr18:74775367-74775387 1.0000 20 chr4:1213242-1213262 1.0000 20 chr12:44587248-44587268 1.0000 20 chr3:183245278-183245298 1.0000 20 chr6:24061399-24061419 1.0000 20 chr12:54145266-54145286 1.0000 20 chr14:75982109-75982129 1.0000 20 chr11:83324673-83324693 1.0000 20 chr2:38304147-38304167 1.0000 20 chr7:20280102-20280122 1.0000 20 chr11:133529615-13352963 1.0000 20 chr2:129849384-129849404 1.0000 20 chr6:85256318-85256338 1.0000 20 chr13:78005769-78005789 1.0000 20 chr2:3258235-3258255 1.0000 20 chr1:93053216-93053236 1.0000 20 chr7:120400306-120400326 1.0000 20 chr17:17595406-17595426 1.0000 20 chr12:46574085-46574105 1.0000 20 chr11:109898762-10989878 1.0000 20 chr14:75677832-75677852 1.0000 20 chr9:93894041-93894061 1.0000 20 chr2:233101129-233101149 1.0000 20 chr6:135652317-135652337 1.0000 20 chr1:200849598-200849618 1.0000 20 chr4:155905478-155905498 1.0000 20 chr3:114598314-114598334 1.0000 20 chr11:132227796-13222781 1.0000 20 chrX:24795968-24795988 1.0000 20 chr3:197588290-197588310 1.0000 20 chr9:37144967-37144987 1.0000 20 chr9:91092336-91092356 1.0000 20 chr5:171416425-171416445 1.0000 20 chr10:91719725-91719745 1.0000 20 chr10:31248272-31248292 1.0000 20 chrX:2439611-2439631 1.0000 20 chr7:43094494-43094514 1.0000 20 chr3:73499098-73499118 1.0000 20 chr10:3240090-3240110 1.0000 20 chr3:24844294-24844314 1.0000 20 chr3:190953569-190953589 1.0000 20 chr5:60498239-60498259 1.0000 20 chr15:53072584-53072604 1.0000 20 chr14:69533648-69533668 1.0000 20 chr18:56329535-56329555 1.0000 20 chr5:53906555-53906575 1.0000 20 chr6:130838753-130838773 1.0000 20 chr6:11375076-11375096 1.0000 20 chr20:19052134-19052154 1.0000 20 chr20:13640167-13640187 1.0000 20 chr1:221930714-221930734 1.0000 20 chr2:118813887-118813907 1.0000 20 chr21:47239063-47239083 1.0000 20 chr16:14051410-14051430 1.0000 20 chr5:73194991-73195011 1.0000 20 chr12:92890689-92890709 1.0000 20 chr7:43609156-43609176 1.0000 20 chr2:42949892-42949912 1.0000 20 chr6:140864229-140864249 1.0000 20 chr18:56658819-56658839 1.0000 20 chr11:117699560-11769958 1.0000 20 chr10:25218265-25218285 1.0000 20 chr2:76677515-76677535 1.0000 20 chr15:91440559-91440579 1.0000 20 chr7:95344767-95344787 1.0000 20 chr2:7898446-7898466 1.0000 20 chr5:78281576-78281596 1.0000 20 chr20:14810800-14810820 1.0000 20 chr5:100163955-100163975 1.0000 20 chr3:117198153-117198173 1.0000 20 chr15:67377826-67377846 1.0000 20 chr3:144014182-144014202 1.0000 20 chr15:95128125-95128145 1.0000 20 chr7:81121740-81121760 1.0000 20 chr1:10571104-10571124 1.0000 20 chr12:46603833-46603853 1.0000 20 chr5:43268401-43268421 1.0000 20 chr6:52254771-52254791 1.0000 20 chr17:18274974-18274994 1.0000 20 chr17:80498230-80498250 1.0000 20 chr3:149832870-149832890 1.0000 20 chr14:20730881-20730901 1.0000 20 chr2:196370555-196370575 1.0000 20 chr9:75058434-75058454 1.0000 20 chr5:6275039-6275059 1.0000 20 chr12:24894327-24894347 1.0000 20 chr10:25210478-25210498 1.0000 20 chr20:50077617-50077637 1.0000 20 chr13:33479449-33479469 1.0000 20 chr5:158348646-158348666 1.0000 20 chr11:107735030-10773505 1.0000 20 chr1:12498741-12498761 1.0000 20 chr7:128574729-128574749 1.0000 20 chr1:32357096-32357116 1.0000 20 chrX:9612603-9612623 1.0000 20 chr3:320139-320159 1.0000 20 chr1:217200936-217200956 1.0000 20 chr5:37860116-37860136 1.0000 20 chr4:25940636-25940656 1.0000 20 chr5:142986105-142986125 1.0000 20 chr20:19928705-19928725 1.0000 20 chr17:75208712-75208732 1.0000 20 chr13:50941116-50941136 1.0000 20 chr15:96777992-96778012 1.0000 20 chr18:53779794-53779814 1.0000 20 chr1:16245998-16246018 1.0000 20 chr18:13607074-13607094 1.0000 20 chr1:219638780-219638800 1.0000 20 chr1:221840994-221841014 1.0000 20 chr10:22597500-22597520 1.0000 20 chr12:68671759-68671779 1.0000 20 chr6:135410141-135410161 1.0000 20 chr18:59619544-59619564 1.0000 20 chrX:39733922-39733942 1.0000 20 chr1:157565322-157565342 1.0000 20 chr3:150502323-150502343 1.0000 20 chr10:88609402-88609422 1.0000 20 chr10:2834451-2834471 1.0000 20 chr2:8618101-8618121 1.0000 20 chr2:12647657-12647677 1.0000 20 chr7:11372327-11372347 1.0000 20 chr17:70403719-70403739 1.0000 20 chr11:79194016-79194036 1.0000 20 chr2:38838712-38838732 1.0000 20 chr2:142271598-142271618 1.0000 20 chr6:10460551-10460571 1.0000 20 chr5:76033078-76033098 1.0000 20 chr7:81555063-81555083 1.0000 20 chr9:113775702-113775722 1.0000 20 chr4:114744544-114744564 1.0000 20 chr5:96884282-96884302 1.0000 20 chrX:1655097-1655117 1.0000 20 chr6:158221823-158221843 1.0000 20 chr5:75878241-75878261 1.0000 20 chr16:31886031-31886051 1.0000 20 chr6:15387493-15387513 1.0000 20 chr9:92305581-92305601 1.0000 20 chr16:11058876-11058896 1.0000 20 chr4:40658594-40658614 1.0000 20 chr6:45678386-45678406 1.0000 20 chr4:79522359-79522379 1.0000 20 chr3:87724106-87724126 1.0000 20 chr7:114359103-114359123 1.0000 20 chr9:87454005-87454025 1.0000 20 chr4:152488443-152488463 1.0000 20 chr6:108919643-108919663 1.0000 20 chr1:42335958-42335978 1.0000 20 chr13:81447878-81447898 1.0000 20 chr2:64954329-64954349 1.0000 20 chr20:36619135-36619155 1.0000 20 chr6:85285173-85285193 1.0000 20 chr12:106467148-10646716 1.0000 20 chr3:52278490-52278510 1.0000 20 chr4:104419611-104419631 1.0000 20 chr11:48028408-48028428 1.0000 20 chr9:93913430-93913450 1.0000 20 chrX:13094913-13094933 1.0000 20 chr14:88406891-88406911 1.0000 20 chr9:132891455-132891475 1.0000 20 chr11:120796856-12079687 1.0000 20 chr20:5741536-5741556 1.0000 20 chr3:61344309-61344329 1.0000 20 chr17:8884935-8884955 1.0000 20 chr1:170514799-170514819 1.0000 20 chr12:14774896-14774916 1.0000 20 chr5:141037842-141037862 1.0000 20 chr2:135381580-135381600 1.0000 20 chr7:156711950-156711970 1.0000 20 chr12:15103504-15103524 1.0000 20 chr6:40116800-40116820 1.0000 20 chr13:59527981-59528001 1.0000 20 chr1:177530726-177530746 1.0000 20 chr4:141712201-141712221 1.0000 20 chr12:46502721-46502741 1.0000 20 chr4:128778504-128778524 1.0000 20 chr12:14310245-14310265 1.0000 20 chr14:94437531-94437551 1.0000 20 chr2:12146213-12146233 1.0000 20 chr1:108479249-108479269 1.0000 20 chr16:53133350-53133370 1.0000 20 chr21:36238401-36238421 1.0000 20 chr6:139237051-139237071 1.0000 20 chr1:238350662-238350682 1.0000 20 chr19:45640585-45640605 1.0000 20 chr4:40623911-40623931 1.0000 20 chr12:102248726-10224874 1.0000 20 chr10:65467259-65467279 1.0000 20 chr7:76895969-76895989 1.0000 20 chr22:33695731-33695751 1.0000 20 chr16:87491499-87491519 1.0000 20 chr18:49251889-49251909 1.0000 20 chr6:154623449-154623469 1.0000 20 chr10:23012422-23012442 1.0000 20 chr3:137049299-137049319 1.0000 20 chr8:109083596-109083616 1.0000 20 chr2:161122969-161122989 1.0000 20 chr6:52092496-52092516 1.0000 20 chr3:187520865-187520885 1.0000 20 chr3:40226699-40226719 1.0000 20 chr12:105035870-10503589 1.0000 20 chr15:75081313-75081333 1.0000 20 chr9:93589625-93589645 1.0000 20 chr4:77437315-77437335 1.0000 20 chr7:122387122-122387142 1.0000 20 chr12:105324627-10532464 1.0000 20 chr2:201336363-201336383 1.0000 20 chr5:168843964-168843984 1.0000 20 chr6:106611990-106612010 1.0000 20 chr15:67832026-67832046 1.0000 20 chr6:154676280-154676300 1.0000 20 chr4:74601093-74601113 1.0000 20 chr21:43925381-43925401 1.0000 20 chr12:96589502-96589522 1.0000 20 chr14:72622223-72622243 1.0000 20 chr21:36067863-36067883 1.0000 20 chr7:126297885-126297905 1.0000 20 chr13:59530103-59530123 1.0000 20 chr18:52732179-52732199 1.0000 20 chr17:76702504-76702524 1.0000 20 chr16:10929569-10929589 1.0000 20 chr18:51674017-51674037 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_BCL11A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/BCL11A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.262 C 0.235 G 0.232 T 0.271 Background letter frequencies (from file dataset with add-one prior applied): A 0.262 C 0.235 G 0.232 T 0.271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CASTTCCT MEME-1 width = 8 sites = 17 llr = 135 E-value = 3.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASTTCCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:21::: pos.-specific C a:411aa2 probability G ::6:2::: matrix T :::66::8 bits 2.1 * ** 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 *** *** (11.5 bits) 0.8 *** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGTTCCT consensus CA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTTCCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:23012422-23012442 11 1.57e-05 TCACCACTCT CAGTTCCT GA chr13:59527981-59528001 8 1.57e-05 tcttccc cagttcct tacct chr2:142271598-142271618 12 1.57e-05 tgcctcctct cagttcct c chr3:24844294-24844314 12 1.57e-05 gatcaaatct cagttcct g chr6:154623449-154623469 3 3.16e-05 CC CACTTCCT CTTTCTTGTG chr16:10929569-10929589 10 7.38e-05 GCTTGTGGG CAGTGCCT ATT chr5:53906555-53906575 8 8.92e-05 ATACTTT CACATCCT GTTGT chr12:102248726-10224874 1 1.17e-04 . CACTTCCC CAAAAAGGAT chr3:167969300-167969320 8 1.30e-04 GACAGAA CAGTCCCT TTGGA chrX:13094913-13094933 13 1.59e-04 tgacattgat cagtacct chr2:129849384-129849404 6 1.73e-04 gtggt cactccct gttcctc chr12:68671759-68671779 3 2.28e-04 CC CACCTCCT TGCTCAGCTC chr6:85256318-85256338 2 2.28e-04 G CAGAGCCT TTGGTGGAAG chr1:157565322-157565342 9 2.66e-04 AGGTTAAC CACATCCC TAGC chr16:31886031-31886051 9 2.91e-04 catcttaa cactgccc aggg chr5:6275039-6275059 4 3.18e-04 ggg cagaacct gcaaacatg chr14:75677832-75677852 1 3.54e-04 . CAGCTCCC CCGTCATTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTTCCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:23012422-23012442 1.6e-05 10_[+1]_2 chr13:59527981-59528001 1.6e-05 7_[+1]_5 chr2:142271598-142271618 1.6e-05 11_[+1]_1 chr3:24844294-24844314 1.6e-05 11_[+1]_1 chr6:154623449-154623469 3.2e-05 2_[+1]_10 chr16:10929569-10929589 7.4e-05 9_[+1]_3 chr5:53906555-53906575 8.9e-05 7_[+1]_5 chr12:102248726-10224874 0.00012 [+1]_12 chr3:167969300-167969320 0.00013 7_[+1]_5 chrX:13094913-13094933 0.00016 12_[+1] chr2:129849384-129849404 0.00017 5_[+1]_7 chr12:68671759-68671779 0.00023 2_[+1]_10 chr6:85256318-85256338 0.00023 1_[+1]_11 chr1:157565322-157565342 0.00027 8_[+1]_4 chr16:31886031-31886051 0.00029 8_[+1]_4 chr5:6275039-6275059 0.00032 3_[+1]_9 chr14:75677832-75677852 0.00035 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTTCCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASTTCCT width=8 seqs=17 chr10:23012422-23012442 ( 11) CAGTTCCT 1 chr13:59527981-59528001 ( 8) CAGTTCCT 1 chr2:142271598-142271618 ( 12) CAGTTCCT 1 chr3:24844294-24844314 ( 12) CAGTTCCT 1 chr6:154623449-154623469 ( 3) CACTTCCT 1 chr16:10929569-10929589 ( 10) CAGTGCCT 1 chr5:53906555-53906575 ( 8) CACATCCT 1 chr12:102248726-10224874 ( 1) CACTTCCC 1 chr3:167969300-167969320 ( 8) CAGTCCCT 1 chrX:13094913-13094933 ( 13) CAGTACCT 1 chr2:129849384-129849404 ( 6) CACTCCCT 1 chr12:68671759-68671779 ( 3) CACCTCCT 1 chr6:85256318-85256338 ( 2) CAGAGCCT 1 chr1:157565322-157565342 ( 9) CACATCCC 1 chr16:31886031-31886051 ( 9) CACTGCCC 1 chr5:6275039-6275059 ( 4) CAGAACCT 1 chr14:75677832-75677852 ( 1) CAGCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTTCCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.36909 E= 3.0e+000 -1073 209 -1073 -1073 193 -1073 -1073 -1073 -1073 81 134 -1073 -15 -100 -1073 125 -115 -100 -39 112 -1073 209 -1073 -1073 -1073 209 -1073 -1073 -1073 0 -1073 149 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTTCCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.0e+000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.411765 0.588235 0.000000 0.235294 0.117647 0.000000 0.647059 0.117647 0.117647 0.176471 0.588235 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.235294 0.000000 0.764706 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTTCCT MEME-1 regular expression -------------------------------------------------------------------------------- CA[GC][TA]TCC[TC] -------------------------------------------------------------------------------- Time 1.92 secs. ******************************************************************************** ******************************************************************************** MOTIF MTGASTCA MEME-2 width = 8 sites = 19 llr = 143 E-value = 6.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 32:91:29 pos.-specific C 6:::6:81 probability G 1:914:1: matrix T :81::a:: bits 2.1 1.9 * * 1.7 ** * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 *** *** (10.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGACTCA consensus AA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:65467259-65467279 12 1.52e-05 CAGTTTAGTC CTGACTCA G chr3:149832870-149832890 3 1.52e-05 TA CTGACTCA ATTATACACT chr1:42335958-42335978 3 3.02e-05 CA CTGAGTCA TCCATTCAAC chr4:151973667-151973687 9 3.02e-05 CGGCTGAA CTGAGTCA GATA chr20:19928705-19928725 7 4.71e-05 CTCCAG ATGACTCA TGTAAG chr10:91719725-91719745 8 4.71e-05 CCCTCGA ATGACTCA GCATT chr5:171416425-171416445 13 4.71e-05 gcctcctgat atgactca chr1:219638780-219638800 10 7.85e-05 GGAAACATT CAGACTCA TAA chr3:197588290-197588310 11 1.10e-04 gtggcttaTT CAGAGTCA TA chr12:106467148-10646716 5 1.72e-04 TCTT GTGACTCA AGATGAAA chr18:56658819-56658839 10 2.37e-04 GTTTCGCCC CTGAGTCC ATG chr2:42949892-42949912 13 2.65e-04 AAGTCCTTGG CTGGCTCA chr6:131831483-131831503 1 2.95e-04 . ATGACTCC AGGTGGCAAT chr7:156711950-156711970 2 3.30e-04 A CAGACTAA TAAAGGCATT chr5:100163955-100163975 4 3.30e-04 CTG ATGAGTAA TAAATTGAT chr16:48222586-48222606 2 3.48e-04 a cttactca ttacgcaagt chr7:126297885-126297905 4 3.63e-04 CCG CTGAGTGA TTTAAAGCG chr1:170514799-170514819 12 4.23e-04 TACACTAGAA ATGAATCA G chr6:135652317-135652337 2 4.39e-04 A CAGAGTAA TTAAGAAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:65467259-65467279 1.5e-05 11_[+2]_1 chr3:149832870-149832890 1.5e-05 2_[+2]_10 chr1:42335958-42335978 3e-05 2_[+2]_10 chr4:151973667-151973687 3e-05 8_[+2]_4 chr20:19928705-19928725 4.7e-05 6_[+2]_6 chr10:91719725-91719745 4.7e-05 7_[+2]_5 chr5:171416425-171416445 4.7e-05 12_[+2] chr1:219638780-219638800 7.8e-05 9_[+2]_3 chr3:197588290-197588310 0.00011 10_[+2]_2 chr12:106467148-10646716 0.00017 4_[+2]_8 chr18:56658819-56658839 0.00024 9_[+2]_3 chr2:42949892-42949912 0.00027 12_[+2] chr6:131831483-131831503 0.0003 [+2]_12 chr7:156711950-156711970 0.00033 1_[+2]_11 chr5:100163955-100163975 0.00033 3_[+2]_9 chr16:48222586-48222606 0.00035 1_[+2]_11 chr7:126297885-126297905 0.00036 3_[+2]_9 chr1:170514799-170514819 0.00042 11_[+2]_1 chr6:135652317-135652337 0.00044 1_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTGASTCA width=8 seqs=19 chr10:65467259-65467279 ( 12) CTGACTCA 1 chr3:149832870-149832890 ( 3) CTGACTCA 1 chr1:42335958-42335978 ( 3) CTGAGTCA 1 chr4:151973667-151973687 ( 9) CTGAGTCA 1 chr20:19928705-19928725 ( 7) ATGACTCA 1 chr10:91719725-91719745 ( 8) ATGACTCA 1 chr5:171416425-171416445 ( 13) ATGACTCA 1 chr1:219638780-219638800 ( 10) CAGACTCA 1 chr3:197588290-197588310 ( 11) CAGAGTCA 1 chr12:106467148-10646716 ( 5) GTGACTCA 1 chr18:56658819-56658839 ( 10) CTGAGTCC 1 chr2:42949892-42949912 ( 13) CTGGCTCA 1 chr6:131831483-131831503 ( 1) ATGACTCC 1 chr7:156711950-156711970 ( 2) CAGACTAA 1 chr5:100163955-100163975 ( 4) ATGAGTAA 1 chr16:48222586-48222606 ( 2) CTTACTCA 1 chr7:126297885-126297905 ( 4) CTGAGTGA 1 chr1:170514799-170514819 ( 12) ATGAATCA 1 chr6:135652317-135652337 ( 2) CAGAGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.60572 E= 6.6e+001 27 143 -214 -1089 -31 -1089 -1089 154 -1089 -1089 203 -236 186 -1089 -214 -1089 -231 130 67 -1089 -1089 -1089 -1089 188 -73 175 -214 -1089 177 -116 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 6.6e+001 0.315789 0.631579 0.052632 0.000000 0.210526 0.000000 0.000000 0.789474 0.000000 0.000000 0.947368 0.052632 0.947368 0.000000 0.052632 0.000000 0.052632 0.578947 0.368421 0.000000 0.000000 0.000000 0.000000 1.000000 0.157895 0.789474 0.052632 0.000000 0.894737 0.105263 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-2 regular expression -------------------------------------------------------------------------------- [CA][TA]GA[CG]TCA -------------------------------------------------------------------------------- Time 4.78 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGGTYW MEME-3 width = 8 sites = 18 llr = 136 E-value = 7.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGGTYW MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::14 pos.-specific C :1:::24: probability G :91aa112 matrix T a:9::744 bits 2.1 ** 1.9 * ** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (10.9 bits) 0.8 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGGTTT consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTYW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:107735030-10773505 8 3.41e-05 CTTTCca tgtggtct ctctt chr21:36067863-36067883 1 6.70e-05 . TGTGGTCA AGGGTTGACC chr6:85285173-85285193 6 6.70e-05 gtgtg tgtggtta ctctaat chr2:12647657-12647677 10 6.70e-05 CCATGTCTT TGTGGTTA GCA chr5:43268401-43268421 5 6.70e-05 gcca tgtggtca aactagga chr14:69533648-69533668 6 6.70e-05 AGCAA TGTGGTCA AGATTTC chr10:2834451-2834471 7 9.62e-05 TAGGGA TGTGGTTG AGTTGG chr13:81447878-81447898 5 1.12e-04 tctc tgtggtgt cagtggaa chr7:11372327-11372347 8 1.12e-04 aatggtc tgtggtgt tgcgg chr6:139237051-139237071 3 1.56e-04 GC TGTGGCCT TGGAGGGGGA chr5:96884282-96884302 3 2.14e-04 CT TGTGGGTT CCTGGTGGAT chr4:40658594-40658614 3 2.42e-04 GA TGTGGGTA ATCAGACCAC chr9:93589625-93589645 2 3.50e-04 T TCTGGTTT GTTTTGCATG chr4:152488443-152488463 3 3.50e-04 CT TGTGGCCG GAAACAGCAC chr1:16245998-16246018 5 3.50e-04 GGCC TGTGGTAA AGGTAGGC chr1:12498741-12498761 9 3.50e-04 AGAGGTGT TCTGGTTT TGAG chr17:17595406-17595426 4 3.50e-04 GGA TGTGGCTG GAGCTGGCT chr4:141712201-141712221 11 4.65e-04 AGTTCCTCTT TGGGGTCT GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTYW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:107735030-10773505 3.4e-05 7_[+3]_5 chr21:36067863-36067883 6.7e-05 [+3]_12 chr6:85285173-85285193 6.7e-05 5_[+3]_7 chr2:12647657-12647677 6.7e-05 9_[+3]_3 chr5:43268401-43268421 6.7e-05 4_[+3]_8 chr14:69533648-69533668 6.7e-05 5_[+3]_7 chr10:2834451-2834471 9.6e-05 6_[+3]_6 chr13:81447878-81447898 0.00011 4_[+3]_8 chr7:11372327-11372347 0.00011 7_[+3]_5 chr6:139237051-139237071 0.00016 2_[+3]_10 chr5:96884282-96884302 0.00021 2_[+3]_10 chr4:40658594-40658614 0.00024 2_[+3]_10 chr9:93589625-93589645 0.00035 1_[+3]_11 chr4:152488443-152488463 0.00035 2_[+3]_10 chr1:16245998-16246018 0.00035 4_[+3]_8 chr1:12498741-12498761 0.00035 8_[+3]_4 chr17:17595406-17595426 0.00035 3_[+3]_9 chr4:141712201-141712221 0.00046 10_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTYW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGGTYW width=8 seqs=18 chr11:107735030-10773505 ( 8) TGTGGTCT 1 chr21:36067863-36067883 ( 1) TGTGGTCA 1 chr6:85285173-85285193 ( 6) TGTGGTTA 1 chr2:12647657-12647677 ( 10) TGTGGTTA 1 chr5:43268401-43268421 ( 5) TGTGGTCA 1 chr14:69533648-69533668 ( 6) TGTGGTCA 1 chr10:2834451-2834471 ( 7) TGTGGTTG 1 chr13:81447878-81447898 ( 5) TGTGGTGT 1 chr7:11372327-11372347 ( 8) TGTGGTGT 1 chr6:139237051-139237071 ( 3) TGTGGCCT 1 chr5:96884282-96884302 ( 3) TGTGGGTT 1 chr4:40658594-40658614 ( 3) TGTGGGTA 1 chr9:93589625-93589645 ( 2) TCTGGTTT 1 chr4:152488443-152488463 ( 3) TGTGGCCG 1 chr1:16245998-16246018 ( 5) TGTGGTAA 1 chr1:12498741-12498761 ( 9) TCTGGTTT 1 chr17:17595406-17595426 ( 4) TGTGGCTG 1 chr4:141712201-141712221 ( 11) TGGGGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTYW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.33985 E= 7.7e+001 -1081 -1081 -1081 188 -1081 -108 194 -1081 -1081 -1081 -206 180 -1081 -1081 211 -1081 -1081 -1081 211 -1081 -1081 -50 -106 141 -223 73 -106 71 57 -1081 -48 71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTYW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 7.7e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.111111 0.722222 0.055556 0.388889 0.111111 0.444444 0.388889 0.000000 0.166667 0.444444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGGTYW MEME-3 regular expression -------------------------------------------------------------------------------- TGTGGT[TC][TA] -------------------------------------------------------------------------------- Time 7.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTGGGGG MEME-4 width = 8 sites = 4 llr = 44 E-value = 4.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTGGGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C aa:::::: probability G :::aaaaa matrix T ::8::::: bits 2.1 ** ***** 1.9 ** ***** 1.7 ** ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (15.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTGGGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:52278490-52278510 1 1.01e-05 . CCTGGGGG CGAGGATTGA chr21:47239063-47239083 6 1.01e-05 ctgga cctggggg gtggtga chr11:133529615-13352963 7 1.01e-05 TGCTCT CCTGGGGG CAATTA chr14:75982109-75982129 2 1.98e-05 G CCAGGGGG GCCACACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:52278490-52278510 1e-05 [+4]_12 chr21:47239063-47239083 1e-05 5_[+4]_7 chr11:133529615-13352963 1e-05 6_[+4]_6 chr14:75982109-75982129 2e-05 1_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTGGGGG width=8 seqs=4 chr3:52278490-52278510 ( 1) CCTGGGGG 1 chr21:47239063-47239083 ( 6) CCTGGGGG 1 chr11:133529615-13352963 ( 7) CCTGGGGG 1 chr14:75982109-75982129 ( 2) CCAGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 4.3e+002 -865 209 -865 -865 -865 209 -865 -865 -7 -865 -865 146 -865 -865 210 -865 -865 -865 210 -865 -865 -865 210 -865 -865 -865 210 -865 -865 -865 210 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.3e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGGG MEME-4 regular expression -------------------------------------------------------------------------------- CC[TA]GGGGG -------------------------------------------------------------------------------- Time 11.03 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAGTGA MEME-5 width = 8 sites = 8 llr = 72 E-value = 6.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAGTGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::6a:3:a pos.-specific C ::1:1:1: probability G aa3:9:9: matrix T :::::8:: bits 2.1 ** 1.9 ** * * 1.7 ** * * 1.5 ** ** ** Relative 1.3 ** ** ** Entropy 1.1 ** ***** (13.0 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGTGA consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:40116800-40116820 1 1.41e-05 . GGAAGTGA GAATCTAATG chr7:25312086-25312106 13 1.41e-05 CTGATAATAG GGAAGTGA chr7:31851667-31851687 7 1.41e-05 ACAAGG GGAAGTGA AAGAGA chr7:128574729-128574749 5 2.66e-05 ctgg gggagtga atggcttg chr20:13640167-13640187 8 4.03e-05 gctccca ggaagaga aagtg chr2:118813887-118813907 4 9.36e-05 AAG GGAACTGA AACTTGTTC chr7:157143226-157143246 4 1.06e-04 tca ggcagaga aaggttgca chr1:177530726-177530746 2 1.31e-04 G GGGAGTCA CATTATTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:40116800-40116820 1.4e-05 [+5]_12 chr7:25312086-25312106 1.4e-05 12_[+5] chr7:31851667-31851687 1.4e-05 6_[+5]_6 chr7:128574729-128574749 2.7e-05 4_[+5]_8 chr20:13640167-13640187 4e-05 7_[+5]_5 chr2:118813887-118813907 9.4e-05 3_[+5]_9 chr7:157143226-157143246 0.00011 3_[+5]_9 chr1:177530726-177530746 0.00013 1_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAGTGA width=8 seqs=8 chr6:40116800-40116820 ( 1) GGAAGTGA 1 chr7:25312086-25312106 ( 13) GGAAGTGA 1 chr7:31851667-31851687 ( 7) GGAAGTGA 1 chr7:128574729-128574749 ( 5) GGGAGTGA 1 chr20:13640167-13640187 ( 8) GGAAGAGA 1 chr2:118813887-118813907 ( 4) GGAACTGA 1 chr7:157143226-157143246 ( 4) GGCAGAGA 1 chr1:177530726-177530746 ( 2) GGGAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.66267 E= 6.7e+002 -965 -965 211 -965 -965 -965 211 -965 126 -91 11 -965 193 -965 -965 -965 -965 -91 191 -965 -7 -965 -965 147 -965 -91 191 -965 193 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.7e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.125000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.125000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGTGA MEME-5 regular expression -------------------------------------------------------------------------------- GG[AG]AG[TA]GA -------------------------------------------------------------------------------- Time 12.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:13984220-13984240 6.04e-01 20 chr4:155954195-155954215 9.23e-01 20 chr10:103762861-10376288 7.09e-01 20 chr6:131831483-131831503 1.64e-04 20 chr11:5521846-5521866 5.08e-01 20 chr7:30220526-30220546 5.41e-01 20 chr16:79321104-79321124 6.39e-01 20 chr3:5470800-5470820 7.29e-01 20 chr4:157117257-157117277 2.35e-01 20 chr6:22082137-22082157 1.71e-01 20 chr4:151973667-151973687 6.13e-03 8_[+2(3.02e-05)]_4 chr16:48222586-48222606 2.15e-01 20 chr5:107300575-107300595 7.94e-01 20 chr7:46098195-46098215 7.79e-01 20 chr8:64314672-64314692 5.49e-01 20 chr7:2208059-2208079 5.03e-01 20 chr3:156533998-156534018 4.88e-01 20 chr6:90790711-90790731 2.98e-01 20 chr1:249088007-249088027 7.13e-01 20 chr16:86152361-86152381 8.88e-02 20 chr20:14811337-14811357 1.32e-01 20 chr1:98955847-98955867 9.45e-01 20 chr6:37798142-37798162 6.42e-01 20 chr7:31851667-31851687 4.91e-03 6_[+5(1.41e-05)]_6 chr8:100845418-100845438 8.32e-01 20 chr7:157143226-157143246 1.41e-02 20 chr7:25312086-25312106 2.28e-02 12_[+5(1.41e-05)] chr3:167969300-167969320 1.84e-02 20 chr1:90823701-90823721 9.85e-01 20 chr18:74775367-74775387 2.72e-01 20 chr4:1213242-1213262 7.20e-01 20 chr12:44587248-44587268 1.02e-01 20 chr3:183245278-183245298 3.57e-01 20 chr6:24061399-24061419 5.88e-02 20 chr12:54145266-54145286 5.57e-01 20 chr14:75982109-75982129 7.00e-04 1_[+4(1.98e-05)]_11 chr11:83324673-83324693 4.01e-01 20 chr2:38304147-38304167 6.71e-01 20 chr7:20280102-20280122 4.62e-01 20 chr11:133529615-13352963 3.17e-04 6_[+4(1.01e-05)]_6 chr2:129849384-129849404 5.15e-02 20 chr6:85256318-85256338 2.21e-02 20 chr13:78005769-78005789 8.63e-01 20 chr2:3258235-3258255 3.71e-01 20 chr1:93053216-93053236 1.13e-01 20 chr7:120400306-120400326 9.07e-01 20 chr17:17595406-17595426 2.11e-02 20 chr12:46574085-46574105 6.06e-01 20 chr11:109898762-10989878 1.40e-01 20 chr14:75677832-75677852 2.73e-01 20 chr9:93894041-93894061 2.10e-01 20 chr2:233101129-233101149 8.44e-01 20 chr6:135652317-135652337 2.41e-01 20 chr1:200849598-200849618 5.28e-02 20 chr4:155905478-155905498 7.91e-01 20 chr3:114598314-114598334 1.76e-01 20 chr11:132227796-13222781 8.09e-01 20 chrX:24795968-24795988 3.83e-01 20 chr3:197588290-197588310 4.17e-02 20 chr9:37144967-37144987 9.29e-02 20 chr9:91092336-91092356 5.05e-01 20 chr5:171416425-171416445 2.81e-02 12_[+2(4.71e-05)] chr10:91719725-91719745 3.34e-02 7_[+2(4.71e-05)]_5 chr10:31248272-31248292 2.66e-01 20 chrX:2439611-2439631 6.89e-01 20 chr7:43094494-43094514 8.90e-01 20 chr3:73499098-73499118 5.75e-01 20 chr10:3240090-3240110 9.54e-01 20 chr3:24844294-24844314 3.73e-02 11_[+1(1.57e-05)]_1 chr3:190953569-190953589 4.68e-01 20 chr5:60498239-60498259 2.62e-01 20 chr15:53072584-53072604 5.11e-01 20 chr14:69533648-69533668 4.82e-02 5_[+3(6.70e-05)]_7 chr18:56329535-56329555 2.52e-01 20 chr5:53906555-53906575 5.23e-02 7_[+1(8.92e-05)]_5 chr6:130838753-130838773 6.12e-01 20 chr6:11375076-11375096 6.75e-01 20 chr20:19052134-19052154 1.13e-01 20 chr20:13640167-13640187 7.45e-03 7_[+5(4.03e-05)]_5 chr1:221930714-221930734 4.22e-01 20 chr2:118813887-118813907 7.99e-02 3_[+5(9.36e-05)]_9 chr21:47239063-47239083 1.03e-04 5_[+4(1.01e-05)]_7 chr16:14051410-14051430 1.72e-01 20 chr5:73194991-73195011 5.64e-02 20 chr12:92890689-92890709 1.70e-01 20 chr7:43609156-43609176 6.69e-01 20 chr2:42949892-42949912 1.11e-02 20 chr6:140864229-140864249 4.96e-01 20 chr18:56658819-56658839 2.33e-02 20 chr11:117699560-11769958 9.66e-02 20 chr10:25218265-25218285 9.40e-01 20 chr2:76677515-76677535 3.50e-01 20 chr15:91440559-91440579 7.25e-01 20 chr7:95344767-95344787 5.44e-01 20 chr2:7898446-7898466 5.18e-01 20 chr5:78281576-78281596 4.45e-01 20 chr20:14810800-14810820 6.22e-01 20 chr5:100163955-100163975 2.41e-01 20 chr3:117198153-117198173 7.38e-01 20 chr15:67377826-67377846 3.64e-01 20 chr3:144014182-144014202 5.13e-01 20 chr15:95128125-95128145 7.26e-01 20 chr7:81121740-81121760 7.09e-01 20 chr1:10571104-10571124 2.47e-01 20 chr12:46603833-46603853 8.75e-01 20 chr5:43268401-43268421 1.89e-02 4_[+3(6.70e-05)]_8 chr6:52254771-52254791 6.16e-01 20 chr17:18274974-18274994 7.52e-02 20 chr17:80498230-80498250 1.66e-01 20 chr3:149832870-149832890 1.76e-02 2_[+2(1.52e-05)]_10 chr14:20730881-20730901 1.14e-01 20 chr2:196370555-196370575 4.81e-01 20 chr9:75058434-75058454 2.64e-01 20 chr5:6275039-6275059 1.22e-01 20 chr12:24894327-24894347 8.35e-01 20 chr10:25210478-25210498 8.98e-01 20 chr20:50077617-50077637 8.58e-01 20 chr13:33479449-33479469 3.52e-01 20 chr5:158348646-158348666 9.70e-02 20 chr11:107735030-10773505 1.67e-02 7_[+3(3.41e-05)]_5 chr1:12498741-12498761 2.07e-01 20 chr7:128574729-128574749 5.13e-04 4_[+5(2.66e-05)]_8 chr1:32357096-32357116 5.71e-02 20 chrX:9612603-9612623 4.53e-01 20 chr3:320139-320159 1.23e-01 20 chr1:217200936-217200956 6.79e-01 20 chr5:37860116-37860136 5.30e-01 20 chr4:25940636-25940656 2.30e-01 20 chr5:142986105-142986125 3.26e-01 20 chr20:19928705-19928725 1.87e-02 6_[+2(4.71e-05)]_6 chr17:75208712-75208732 8.00e-01 20 chr13:50941116-50941136 7.60e-01 20 chr15:96777992-96778012 5.10e-01 20 chr18:53779794-53779814 8.49e-02 20 chr1:16245998-16246018 4.21e-02 20 chr18:13607074-13607094 6.73e-01 20 chr1:219638780-219638800 5.94e-02 9_[+2(7.85e-05)]_3 chr1:221840994-221841014 4.25e-01 20 chr10:22597500-22597520 2.00e-02 20 chr12:68671759-68671779 2.48e-02 20 chr6:135410141-135410161 6.79e-01 20 chr18:59619544-59619564 7.59e-01 20 chrX:39733922-39733942 1.31e-01 20 chr1:157565322-157565342 2.01e-01 20 chr3:150502323-150502343 6.08e-01 20 chr10:88609402-88609422 7.04e-01 20 chr10:2834451-2834471 2.11e-02 6_[+3(9.62e-05)]_6 chr2:8618101-8618121 9.45e-01 20 chr2:12647657-12647677 4.84e-02 9_[+3(6.70e-05)]_3 chr7:11372327-11372347 4.69e-02 20 chr17:70403719-70403739 5.71e-01 20 chr11:79194016-79194036 3.45e-01 20 chr2:38838712-38838732 9.12e-01 20 chr2:142271598-142271618 9.61e-03 11_[+1(1.57e-05)]_1 chr6:10460551-10460571 8.60e-01 20 chr5:76033078-76033098 8.58e-01 20 chr7:81555063-81555083 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20 chr6:139237051-139237071 8.06e-03 20 chr1:238350662-238350682 8.67e-01 20 chr19:45640585-45640605 3.30e-01 20 chr4:40623911-40623931 7.33e-01 20 chr12:102248726-10224874 6.41e-02 20 chr10:65467259-65467279 1.56e-02 11_[+2(1.52e-05)]_1 chr7:76895969-76895989 7.96e-01 20 chr22:33695731-33695751 6.31e-01 20 chr16:87491499-87491519 7.93e-01 20 chr18:49251889-49251909 1.26e-01 20 chr6:154623449-154623469 6.77e-02 2_[+1(3.16e-05)]_10 chr10:23012422-23012442 2.58e-02 10_[+1(1.57e-05)]_2 chr3:137049299-137049319 3.60e-01 20 chr8:109083596-109083616 8.49e-01 20 chr2:161122969-161122989 2.50e-01 20 chr6:52092496-52092516 4.92e-01 20 chr3:187520865-187520885 4.79e-01 20 chr3:40226699-40226719 5.76e-02 20 chr12:105035870-10503589 4.52e-01 20 chr15:75081313-75081333 9.24e-01 20 chr9:93589625-93589645 3.02e-01 20 chr4:77437315-77437335 1.95e-01 20 chr7:122387122-122387142 7.84e-01 20 chr12:105324627-10532464 2.79e-02 20 chr2:201336363-201336383 7.15e-01 20 chr5:168843964-168843984 1.47e-01 20 chr6:106611990-106612010 4.17e-01 20 chr15:67832026-67832046 2.60e-02 20 chr6:154676280-154676300 8.49e-01 20 chr4:74601093-74601113 6.16e-01 20 chr21:43925381-43925401 2.32e-01 20 chr12:96589502-96589522 7.50e-01 20 chr14:72622223-72622243 3.93e-01 20 chr21:36067863-36067883 5.78e-02 [+3(6.70e-05)]_12 chr7:126297885-126297905 2.56e-02 20 chr13:59530103-59530123 5.57e-01 20 chr18:52732179-52732199 2.51e-01 20 chr17:76702504-76702524 7.84e-01 20 chr16:10929569-10929589 1.26e-05 9_[+1(7.38e-05)]_3 chr18:51674017-51674037 3.83e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************