******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ATF7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:41831069-41831089 1.0000 20 chrX:54666198-54666218 1.0000 20 chr22:18540577-18540597 1.0000 20 chr22:51059769-51059789 1.0000 20 chr10:70716926-70716946 1.0000 20 chr5:149809310-149809330 1.0000 20 chr18:32630122-32630142 1.0000 20 chr9:37529345-37529365 1.0000 20 chr4:183840287-183840307 1.0000 20 chr11:22724759-22724779 1.0000 20 chr1:22380134-22380154 1.0000 20 chrX:2440244-2440264 1.0000 20 chr10:91411851-91411871 1.0000 20 chr6:151134552-151134572 1.0000 20 chr4:79546461-79546481 1.0000 20 chr19:6126478-6126498 1.0000 20 chrX:133941164-133941184 1.0000 20 chr6:4801070-4801090 1.0000 20 chr18:47839802-47839822 1.0000 20 chr9:112203241-112203261 1.0000 20 chr8:29538608-29538628 1.0000 20 chr8:38660897-38660917 1.0000 20 chr8:126286302-126286322 1.0000 20 chr4:170581346-170581366 1.0000 20 chr15:48469874-48469894 1.0000 20 chr17:43229498-43229518 1.0000 20 chr11:60838339-60838359 1.0000 20 chr19:49078128-49078148 1.0000 20 chr14:68086444-68086464 1.0000 20 chr12:56441020-56441040 1.0000 20 chr7:151047158-151047178 1.0000 20 chr1:155830442-155830462 1.0000 20 chr9:86323839-86323859 1.0000 20 chr11:128285678-12828569 1.0000 20 chr12:54446956-54446976 1.0000 20 chr6:154555714-154555734 1.0000 20 chr22:42929454-42929474 1.0000 20 chr19:50860945-50860965 1.0000 20 chr12:131069222-13106924 1.0000 20 chr8:142275698-142275718 1.0000 20 chr6:159519821-159519841 1.0000 20 chr21:18983994-18984014 1.0000 20 chr8:142275911-142275931 1.0000 20 chr17:73148195-73148215 1.0000 20 chr5:35212516-35212536 1.0000 20 chr8:81423257-81423277 1.0000 20 chr7:128991267-128991287 1.0000 20 chr2:8144577-8144597 1.0000 20 chr15:45076704-45076724 1.0000 20 chrX:48397758-48397778 1.0000 20 chr12:25486984-25487004 1.0000 20 chr17:29421836-29421856 1.0000 20 chr2:240179434-240179454 1.0000 20 chr1:8164718-8164738 1.0000 20 chr19:47617050-47617070 1.0000 20 chr17:57354589-57354609 1.0000 20 chr8:62035149-62035169 1.0000 20 chr5:14264894-14264914 1.0000 20 chr1:20648740-20648760 1.0000 20 chr15:100243994-10024401 1.0000 20 chr19:2962202-2962222 1.0000 20 chr2:127758721-127758741 1.0000 20 chr15:85458366-85458386 1.0000 20 chr19:46384845-46384865 1.0000 20 chr12:110481144-11048116 1.0000 20 chr2:44314545-44314565 1.0000 20 chr4:159827339-159827359 1.0000 20 chrX:135055934-135055954 1.0000 20 chr12:56224483-56224503 1.0000 20 chr15:86189851-86189871 1.0000 20 chr8:49838545-49838565 1.0000 20 chr12:7013890-7013910 1.0000 20 chr15:99780197-99780217 1.0000 20 chr1:28099516-28099536 1.0000 20 chr18:43830652-43830672 1.0000 20 chr4:171771285-171771305 1.0000 20 chr2:28582266-28582286 1.0000 20 chr12:102872914-10287293 1.0000 20 chr1:16677603-16677623 1.0000 20 chr5:172192566-172192586 1.0000 20 chr17:70462593-70462613 1.0000 20 chrX:47880842-47880862 1.0000 20 chr15:72766113-72766133 1.0000 20 chr12:100660903-10066092 1.0000 20 chr3:107941351-107941371 1.0000 20 chr19:2956596-2956616 1.0000 20 chr15:76016322-76016342 1.0000 20 chr14:25312924-25312944 1.0000 20 chr16:70100021-70100041 1.0000 20 chr19:46009811-46009831 1.0000 20 chr20:43599241-43599261 1.0000 20 chr6:11367018-11367038 1.0000 20 chr17:43210365-43210385 1.0000 20 chr16:87990003-87990023 1.0000 20 chr7:100464954-100464974 1.0000 20 chr10:115720627-11572064 1.0000 20 chr7:2394007-2394027 1.0000 20 chr19:6592623-6592643 1.0000 20 chr1:199036802-199036822 1.0000 20 chr10:64271639-64271659 1.0000 20 chr6:35231483-35231503 1.0000 20 chr19:50862242-50862262 1.0000 20 chr22:30662250-30662270 1.0000 20 chr5:173345080-173345100 1.0000 20 chr1:181056907-181056927 1.0000 20 chr5:393080-393100 1.0000 20 chr12:64616349-64616369 1.0000 20 chr4:128930700-128930720 1.0000 20 chr2:58676986-58677006 1.0000 20 chr10:111981693-11198171 1.0000 20 chr19:42772539-42772559 1.0000 20 chr10:111981898-11198191 1.0000 20 chr5:119793755-119793775 1.0000 20 chr19:17666318-17666338 1.0000 20 chr2:202646105-202646125 1.0000 20 chr3:183003792-183003812 1.0000 20 chr1:39624490-39624510 1.0000 20 chr13:43385962-43385982 1.0000 20 chr2:198575368-198575388 1.0000 20 chr17:53573947-53573967 1.0000 20 chr13:81016252-81016272 1.0000 20 chr11:77185449-77185469 1.0000 20 chr7:122794439-122794459 1.0000 20 chr15:45748939-45748959 1.0000 20 chr14:20801546-20801566 1.0000 20 chr6:151302411-151302431 1.0000 20 chr9:123346467-123346487 1.0000 20 chrX:43513972-43513992 1.0000 20 chr12:14520265-14520285 1.0000 20 chr1:168147975-168147995 1.0000 20 chr9:114793788-114793808 1.0000 20 chr14:91812547-91812567 1.0000 20 chr8:27173011-27173031 1.0000 20 chr13:31736854-31736874 1.0000 20 chr13:79578285-79578305 1.0000 20 chr20:4707819-4707839 1.0000 20 chr5:138739345-138739365 1.0000 20 chr2:191979358-191979378 1.0000 20 chr1:150602150-150602170 1.0000 20 chr7:28448987-28449007 1.0000 20 chr7:2595268-2595288 1.0000 20 chr5:126097855-126097875 1.0000 20 chr18:13569138-13569158 1.0000 20 chr6:71567313-71567333 1.0000 20 chr20:1306444-1306464 1.0000 20 chr1:198904251-198904271 1.0000 20 chr18:21197747-21197767 1.0000 20 chr15:49094605-49094625 1.0000 20 chr14:50053225-50053245 1.0000 20 chr7:104909644-104909664 1.0000 20 chr8:132839987-132840007 1.0000 20 chr17:34431088-34431108 1.0000 20 chr16:15068698-15068718 1.0000 20 chr6:26026618-26026638 1.0000 20 chr12:31004514-31004534 1.0000 20 chr15:78396251-78396271 1.0000 20 chr6:27832944-27832964 1.0000 20 chr19:49653751-49653771 1.0000 20 chr12:106696414-10669643 1.0000 20 chr5:64331610-64331630 1.0000 20 chr13:96705042-96705062 1.0000 20 chr5:5751773-5751793 1.0000 20 chr8:17013367-17013387 1.0000 20 chr5:150284689-150284709 1.0000 20 chr1:1624376-1624396 1.0000 20 chr11:108535564-10853558 1.0000 20 chr5:175964878-175964898 1.0000 20 chr4:152803518-152803538 1.0000 20 chr5:168843962-168843982 1.0000 20 chr4:40327590-40327610 1.0000 20 chr19:55574702-55574722 1.0000 20 chr5:118556491-118556511 1.0000 20 chr1:210520641-210520661 1.0000 20 chr1:221882523-221882543 1.0000 20 chr3:48701548-48701568 1.0000 20 chr16:3115290-3115310 1.0000 20 chr7:154998365-154998385 1.0000 20 chr6:31587841-31587861 1.0000 20 chr1:201865235-201865255 1.0000 20 chr17:36134671-36134691 1.0000 20 chr9:34178962-34178982 1.0000 20 chr1:151254203-151254223 1.0000 20 chr19:35739454-35739474 1.0000 20 chr7:4764980-4765000 1.0000 20 chr1:87510640-87510660 1.0000 20 chr7:20240215-20240235 1.0000 20 chrX:48858791-48858811 1.0000 20 chr3:87553269-87553289 1.0000 20 chr17:31082225-31082245 1.0000 20 chr2:131582145-131582165 1.0000 20 chr16:27561362-27561382 1.0000 20 chr15:90640363-90640383 1.0000 20 chr21:44597298-44597318 1.0000 20 chr4:75375268-75375288 1.0000 20 chr10:97026629-97026649 1.0000 20 chr17:35790310-35790330 1.0000 20 chr7:137725007-137725027 1.0000 20 chr1:1677877-1677897 1.0000 20 chr2:87011361-87011381 1.0000 20 chr7:104653524-104653544 1.0000 20 chr5:40486698-40486718 1.0000 20 chr13:113455320-11345534 1.0000 20 chr8:107669928-107669948 1.0000 20 chr3:27711202-27711222 1.0000 20 chr21:47012368-47012388 1.0000 20 chr18:57569480-57569500 1.0000 20 chr3:187463402-187463422 1.0000 20 chr13:76112124-76112144 1.0000 20 chr20:57445918-57445938 1.0000 20 chr21:44394222-44394242 1.0000 20 chr18:23670714-23670734 1.0000 20 chr12:122028207-12202822 1.0000 20 chr11:81674232-81674252 1.0000 20 chr12:56521696-56521716 1.0000 20 chr11:108338239-10833825 1.0000 20 chr4:142142033-142142053 1.0000 20 chr6:27863041-27863061 1.0000 20 chr19:49164490-49164510 1.0000 20 chr5:132087404-132087424 1.0000 20 chr8:28726001-28726021 1.0000 20 chr17:16882958-16882978 1.0000 20 chr8:50969189-50969209 1.0000 20 chr8:8144230-8144250 1.0000 20 chr2:178029492-178029512 1.0000 20 chrX:47077916-47077936 1.0000 20 chr8:103597567-103597587 1.0000 20 chr8:38243913-38243933 1.0000 20 chr3:79068779-79068799 1.0000 20 chr1:936304-936324 1.0000 20 chr13:49822005-49822025 1.0000 20 chr4:38822089-38822109 1.0000 20 chr9:133689843-133689863 1.0000 20 chr11:129872592-12987261 1.0000 20 chr12:27332877-27332897 1.0000 20 chr9:37465493-37465513 1.0000 20 chr5:137673236-137673256 1.0000 20 chr12:58138694-58138714 1.0000 20 chr15:70786674-70786694 1.0000 20 chr9:100395127-100395147 1.0000 20 chr17:7589722-7589742 1.0000 20 chr1:75214790-75214810 1.0000 20 chr3:169940034-169940054 1.0000 20 chr8:29991543-29991563 1.0000 20 chr22:39052524-39052544 1.0000 20 chr2:74781563-74781583 1.0000 20 chr20:1851572-1851592 1.0000 20 chr6:156957456-156957476 1.0000 20 chr12:111165783-11116580 1.0000 20 chr19:4376105-4376125 1.0000 20 chr7:99942657-99942677 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ATF7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ATF7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.245 G 0.225 T 0.262 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.245 G 0.225 T 0.262 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACRTCA MEME-1 width = 8 sites = 29 llr = 245 E-value = 1.2e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACRTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::8:4::a pos.-specific C :::8::a: probability G :9::4::: matrix T a1211a:: bits 2.1 1.9 * *** 1.7 * *** 1.5 ** *** Relative 1.3 ** * *** Entropy 1.1 **** *** (12.2 bits) 0.9 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACATCA consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACRTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:81674232-81674252 1 1.50e-05 . TGACGTCA TTATTTCCTT chr4:128930700-128930720 6 1.50e-05 CAAGA TGACGTca gactatt chr17:43210365-43210385 2 1.50e-05 G TGACGTCA TAGGATTAAC chr15:76016322-76016342 10 1.50e-05 GCTCTGCCG TGACGTCA TCT chr2:8144577-8144597 7 1.50e-05 TTCTGA TGACGTCA TAGGCT chr17:73148195-73148215 3 1.50e-05 GA TGACGTCA GTGTTGTAGA chr8:38660897-38660917 6 1.50e-05 aagta tgacgtca gctgtga chr8:28726001-28726021 12 3.28e-05 AAGTTGTAAA TGACATCA C chr21:47012368-47012388 1 3.28e-05 . TGACATCA GCCTGTCACT chr15:99780197-99780217 11 3.28e-05 gggtttccca tgacatca tc chr4:159827339-159827359 6 3.28e-05 TTCCA TGACATCA TTGTTTG chr12:110481144-11048116 13 3.28e-05 ggcaaaggaa tgacatca chr3:27711202-27711222 1 6.49e-05 . TGTCATCA ATGCACTTTT chr15:49094605-49094625 4 6.49e-05 TGA TGTCATCA CTCTCACTG chr1:16677603-16677623 3 6.49e-05 GA TGTCATCA TTCTTAAGCA chr2:240179434-240179454 2 6.49e-05 a tgtcatca tcctaggcct chr5:35212516-35212536 2 6.49e-05 A TGTCATCA GATTAGTTGA chr20:4707819-4707839 1 8.24e-05 . TGACTTCA TTTCTGATGT chr18:13569138-13569158 1 9.84e-05 . TGATGTCA TACTTTCATA chr15:85458366-85458386 3 9.84e-05 GA TGATGTCA TCCTACCCGT chr9:112203241-112203261 8 9.84e-05 atttcaa tgatgtca tccca chr5:119793755-119793775 12 1.16e-04 agaggacagc ttacgtca t chr13:81016252-81016272 11 1.56e-04 agatagaaga ttacatca tc chr15:100243994-10024401 1 1.56e-04 . TTACATCA TTTTTGGTGA chr12:131069222-13106924 12 1.56e-04 atcacaacca ttacatca t chr17:53573947-53573967 4 1.85e-04 TAG TGTCTTCA GGGAAGATG chr19:50862242-50862262 1 1.85e-04 . TGGCGTCA TGGTGATGGC chr5:118556491-118556511 1 2.14e-04 . TGAGGTCA TTGTGTGTGA chr17:57354589-57354609 4 3.21e-04 TAA TGATTTCA GACACAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACRTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:81674232-81674252 1.5e-05 [+1]_12 chr4:128930700-128930720 1.5e-05 5_[+1]_7 chr17:43210365-43210385 1.5e-05 1_[+1]_11 chr15:76016322-76016342 1.5e-05 9_[+1]_3 chr2:8144577-8144597 1.5e-05 6_[+1]_6 chr17:73148195-73148215 1.5e-05 2_[+1]_10 chr8:38660897-38660917 1.5e-05 5_[+1]_7 chr8:28726001-28726021 3.3e-05 11_[+1]_1 chr21:47012368-47012388 3.3e-05 [+1]_12 chr15:99780197-99780217 3.3e-05 10_[+1]_2 chr4:159827339-159827359 3.3e-05 5_[+1]_7 chr12:110481144-11048116 3.3e-05 12_[+1] chr3:27711202-27711222 6.5e-05 [+1]_12 chr15:49094605-49094625 6.5e-05 3_[+1]_9 chr1:16677603-16677623 6.5e-05 2_[+1]_10 chr2:240179434-240179454 6.5e-05 1_[+1]_11 chr5:35212516-35212536 6.5e-05 1_[+1]_11 chr20:4707819-4707839 8.2e-05 [+1]_12 chr18:13569138-13569158 9.8e-05 [+1]_12 chr15:85458366-85458386 9.8e-05 2_[+1]_10 chr9:112203241-112203261 9.8e-05 7_[+1]_5 chr5:119793755-119793775 0.00012 11_[+1]_1 chr13:81016252-81016272 0.00016 10_[+1]_2 chr15:100243994-10024401 0.00016 [+1]_12 chr12:131069222-13106924 0.00016 11_[+1]_1 chr17:53573947-53573967 0.00019 3_[+1]_9 chr19:50862242-50862262 0.00019 [+1]_12 chr5:118556491-118556511 0.00021 [+1]_12 chr17:57354589-57354609 0.00032 3_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACRTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACRTCA width=8 seqs=29 chr11:81674232-81674252 ( 1) TGACGTCA 1 chr4:128930700-128930720 ( 6) TGACGTCA 1 chr17:43210365-43210385 ( 2) TGACGTCA 1 chr15:76016322-76016342 ( 10) TGACGTCA 1 chr2:8144577-8144597 ( 7) TGACGTCA 1 chr17:73148195-73148215 ( 3) TGACGTCA 1 chr8:38660897-38660917 ( 6) TGACGTCA 1 chr8:28726001-28726021 ( 12) TGACATCA 1 chr21:47012368-47012388 ( 1) TGACATCA 1 chr15:99780197-99780217 ( 11) TGACATCA 1 chr4:159827339-159827359 ( 6) TGACATCA 1 chr12:110481144-11048116 ( 13) TGACATCA 1 chr3:27711202-27711222 ( 1) TGTCATCA 1 chr15:49094605-49094625 ( 4) TGTCATCA 1 chr1:16677603-16677623 ( 3) TGTCATCA 1 chr2:240179434-240179454 ( 2) TGTCATCA 1 chr5:35212516-35212536 ( 2) TGTCATCA 1 chr20:4707819-4707839 ( 1) TGACTTCA 1 chr18:13569138-13569158 ( 1) TGATGTCA 1 chr15:85458366-85458386 ( 3) TGATGTCA 1 chr9:112203241-112203261 ( 8) TGATGTCA 1 chr5:119793755-119793775 ( 12) TTACGTCA 1 chr13:81016252-81016272 ( 11) TTACATCA 1 chr15:100243994-10024401 ( 1) TTACATCA 1 chr12:131069222-13106924 ( 12) TTACATCA 1 chr17:53573947-53573967 ( 4) TGTCTTCA 1 chr19:50862242-50862262 ( 1) TGGCGTCA 1 chr5:118556491-118556511 ( 1) TGAGGTCA 1 chr17:57354589-57354609 ( 4) TGATTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACRTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.05199 E= 1.2e-020 -1150 -1150 -1150 193 -1150 -1150 193 -92 150 -1150 -271 -34 -1150 176 -271 -92 74 -1150 99 -134 -1150 -1150 -1150 193 -1150 203 -1150 -1150 190 -1150 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACRTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.2e-020 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.862069 0.137931 0.758621 0.000000 0.034483 0.206897 0.000000 0.827586 0.034483 0.137931 0.448276 0.000000 0.448276 0.103448 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACRTCA MEME-1 regular expression -------------------------------------------------------------------------------- TG[AT]C[AG]TCA -------------------------------------------------------------------------------- Time 5.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCGGS MEME-2 width = 8 sites = 8 llr = 74 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCGGS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::3:1 pos.-specific C ::::8:15 probability G aaaa:894 matrix T ::::3::: bits 2.1 **** 1.9 **** 1.7 **** 1.5 **** * Relative 1.3 ******* Entropy 1.1 ******* (13.3 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCGGC consensus TA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:27561362-27561382 8 1.49e-05 CTCCCCG GGGGCGGG CTCAG chr19:17666318-17666338 1 1.49e-05 . GGGGCGGG GCGTCCTGGG chr1:151254203-151254223 4 2.33e-05 TTT GGGGTGGC GTCCCATTC chr7:154998365-154998385 10 2.33e-05 tctgtctct ggggtggc ctc chr19:50860945-50860965 12 3.25e-05 CTCCGCGGGT GGGGCAGC A chr19:6126478-6126498 11 3.25e-05 GATTCCTGAT ggggcagc tc chr5:137673236-137673256 5 5.72e-05 GGAG GGGGCGGA GAGAGAAG chr19:46009811-46009831 1 7.35e-05 . GGGGCGCG ACCAAATCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:27561362-27561382 1.5e-05 7_[+2]_5 chr19:17666318-17666338 1.5e-05 [+2]_12 chr1:151254203-151254223 2.3e-05 3_[+2]_9 chr7:154998365-154998385 2.3e-05 9_[+2]_3 chr19:50860945-50860965 3.3e-05 11_[+2]_1 chr19:6126478-6126498 3.3e-05 10_[+2]_2 chr5:137673236-137673256 5.7e-05 4_[+2]_8 chr19:46009811-46009831 7.4e-05 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCGGS width=8 seqs=8 chr16:27561362-27561382 ( 8) GGGGCGGG 1 chr19:17666318-17666338 ( 1) GGGGCGGG 1 chr1:151254203-151254223 ( 4) GGGGTGGC 1 chr7:154998365-154998385 ( 10) GGGGTGGC 1 chr19:50860945-50860965 ( 12) GGGGCAGC 1 chr19:6126478-6126498 ( 11) GGGGCAGC 1 chr5:137673236-137673256 ( 5) GGGGCGGA 1 chr19:46009811-46009831 ( 1) GGGGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.98673 E= 1.3e+002 -965 -965 215 -965 -965 -965 215 -965 -965 -965 215 -965 -965 -965 215 -965 -965 161 -965 -7 -10 -965 173 -965 -965 -97 196 -965 -110 103 73 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.250000 0.000000 0.750000 0.000000 0.000000 0.125000 0.875000 0.000000 0.125000 0.500000 0.375000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGS MEME-2 regular expression -------------------------------------------------------------------------------- GGGG[CT][GA]G[CG] -------------------------------------------------------------------------------- Time 8.43 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATGGGG MEME-3 width = 8 sites = 4 llr = 43 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a3a::::: pos.-specific C :::::::: probability G :8::aaaa matrix T :::a:::: bits 2.1 **** 1.9 * ****** 1.7 * ****** 1.5 * ****** Relative 1.3 ******** Entropy 1.1 ******** (15.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATGGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:35739454-35739474 13 1.09e-05 TGGCCGGAGC AGATGGGG chrX:47880842-47880862 2 1.09e-05 G AGATGGGG AGAACGTGTG chr1:20648740-20648760 5 1.09e-05 attg agatgggg aagGAACC chr5:138739345-138739365 12 2.38e-05 tctccactga aaatgggg a -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35739454-35739474 1.1e-05 12_[+3] chrX:47880842-47880862 1.1e-05 1_[+3]_11 chr1:20648740-20648760 1.1e-05 4_[+3]_8 chr5:138739345-138739365 2.4e-05 11_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATGGGG width=8 seqs=4 chr19:35739454-35739474 ( 13) AGATGGGG 1 chrX:47880842-47880862 ( 2) AGATGGGG 1 chr1:20648740-20648760 ( 5) AGATGGGG 1 chr5:138739345-138739365 ( 12) AAATGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 1.1e+003 190 -865 -865 -865 -10 -865 173 -865 190 -865 -865 -865 -865 -865 -865 193 -865 -865 215 -865 -865 -865 215 -865 -865 -865 215 -865 -865 -865 215 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.1e+003 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATGGGG MEME-3 regular expression -------------------------------------------------------------------------------- A[GA]ATGGGG -------------------------------------------------------------------------------- Time 10.67 secs. ******************************************************************************** ******************************************************************************** MOTIF WGSAGTGA MEME-4 width = 8 sites = 7 llr = 69 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGSAGTGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4::a:::a pos.-specific C ::6::::: probability G :a4:a:a: matrix T 6::::a:: bits 2.1 * * * 1.9 * ***** 1.7 * ***** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 ******* (14.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCAGTGA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSAGTGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:156957456-156957476 10 1.38e-05 aggctagag tgcagtga cgt chr2:178029492-178029512 12 1.38e-05 GCCCTAAAGA TGCAGTGA T chr17:16882958-16882978 13 1.38e-05 aggcagaggt tgcagtga chr5:150284689-150284709 9 2.64e-05 GAGGAAGT TGGAGTGA ACCT chr9:133689843-133689863 5 4.05e-05 tatc agcagtga aagagatg chr1:201865235-201865255 10 5.34e-05 GTGCACTAG AGGAGTGA TGA chr1:22380134-22380154 11 5.34e-05 TCGCGGTATA AGGAGTGA GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSAGTGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:156957456-156957476 1.4e-05 9_[+4]_3 chr2:178029492-178029512 1.4e-05 11_[+4]_1 chr17:16882958-16882978 1.4e-05 12_[+4] chr5:150284689-150284709 2.6e-05 8_[+4]_4 chr9:133689843-133689863 4e-05 4_[+4]_8 chr1:201865235-201865255 5.3e-05 9_[+4]_3 chr1:22380134-22380154 5.3e-05 10_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSAGTGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGSAGTGA width=8 seqs=7 chr6:156957456-156957476 ( 10) TGCAGTGA 1 chr2:178029492-178029512 ( 12) TGCAGTGA 1 chr17:16882958-16882978 ( 13) TGCAGTGA 1 chr5:150284689-150284709 ( 9) TGGAGTGA 1 chr9:133689843-133689863 ( 5) AGCAGTGA 1 chr1:201865235-201865255 ( 10) AGGAGTGA 1 chr1:22380134-22380154 ( 11) AGGAGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSAGTGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 2.0e+002 68 -945 -945 113 -945 -945 215 -945 -945 122 93 -945 190 -945 -945 -945 -945 -945 215 -945 -945 -945 -945 193 -945 -945 215 -945 190 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSAGTGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.0e+002 0.428571 0.000000 0.000000 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGSAGTGA MEME-4 regular expression -------------------------------------------------------------------------------- [TA]G[CG]AGTGA -------------------------------------------------------------------------------- Time 11.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CACWGTGG MEME-5 width = 8 sites = 7 llr = 66 E-value = 8.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACWGTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:4:::: pos.-specific C a:9:1::: probability G ::1:91aa matrix T :::6:9:: bits 2.1 ** 1.9 ** ** 1.7 ** ** 1.5 *** * ** Relative 1.3 *** **** Entropy 1.1 *** **** (13.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTGTGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:131582145-131582165 8 1.26e-05 AAACACA CACTGTGG GGAAA chr4:170581346-170581366 7 1.26e-05 ATCATC CACTGTGG AAGAAC chr7:122794439-122794459 5 2.54e-05 TCAT CACAGTGG ACCTGTCA chr9:37529345-37529365 7 2.54e-05 GATGAA CACAGTGG AGAAAA chr5:393080-393100 2 3.62e-05 T CACTGGGG CCCACCTACT chr18:23670714-23670734 9 6.15e-05 CTTCTGCG CACTCTGG GGGA chr14:68086444-68086464 11 8.44e-05 GAGCACAGGC CAGAGTGG GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:131582145-131582165 1.3e-05 7_[+5]_5 chr4:170581346-170581366 1.3e-05 6_[+5]_6 chr7:122794439-122794459 2.5e-05 4_[+5]_8 chr9:37529345-37529365 2.5e-05 6_[+5]_6 chr5:393080-393100 3.6e-05 1_[+5]_11 chr18:23670714-23670734 6.1e-05 8_[+5]_4 chr14:68086444-68086464 8.4e-05 10_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACWGTGG width=8 seqs=7 chr2:131582145-131582165 ( 8) CACTGTGG 1 chr4:170581346-170581366 ( 7) CACTGTGG 1 chr7:122794439-122794459 ( 5) CACAGTGG 1 chr9:37529345-37529365 ( 7) CACAGTGG 1 chr5:393080-393100 ( 2) CACTGGGG 1 chr18:23670714-23670734 ( 9) CACTCTGG 1 chr14:68086444-68086464 ( 11) CAGAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.46255 E= 8.9e+002 -945 203 -945 -945 190 -945 -945 -945 -945 181 -66 -945 68 -945 -945 113 -945 -78 193 -945 -945 -945 -66 171 -945 -945 215 -945 -945 -945 215 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.9e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.428571 0.000000 0.000000 0.571429 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGG MEME-5 regular expression -------------------------------------------------------------------------------- CAC[TA]GTGG -------------------------------------------------------------------------------- Time 12.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:41831069-41831089 9.88e-02 20 chrX:54666198-54666218 7.62e-01 20 chr22:18540577-18540597 9.16e-01 20 chr22:51059769-51059789 9.66e-01 20 chr10:70716926-70716946 6.08e-01 20 chr5:149809310-149809330 7.77e-01 20 chr18:32630122-32630142 9.27e-01 20 chr9:37529345-37529365 4.61e-03 6_[+5(2.54e-05)]_6 chr4:183840287-183840307 9.99e-01 20 chr11:22724759-22724779 1.00e+00 20 chr1:22380134-22380154 5.06e-03 10_[+4(5.34e-05)]_2 chrX:2440244-2440264 2.82e-01 20 chr10:91411851-91411871 7.51e-02 20 chr6:151134552-151134572 7.61e-01 20 chr4:79546461-79546481 1.18e-01 20 chr19:6126478-6126498 2.78e-04 10_[+2(3.25e-05)]_2 chrX:133941164-133941184 8.62e-01 20 chr6:4801070-4801090 6.83e-01 20 chr18:47839802-47839822 8.40e-01 20 chr9:112203241-112203261 1.15e-02 7_[+1(9.84e-05)]_5 chr8:29538608-29538628 9.48e-01 20 chr8:38660897-38660917 3.53e-04 5_[+1(1.50e-05)]_7 chr8:126286302-126286322 1.47e-01 20 chr4:170581346-170581366 5.01e-03 6_[+5(1.26e-05)]_6 chr15:48469874-48469894 1.00e+00 20 chr17:43229498-43229518 5.63e-01 20 chr11:60838339-60838359 9.91e-01 20 chr19:49078128-49078148 9.85e-01 20 chr14:68086444-68086464 2.43e-03 10_[+5(8.44e-05)]_2 chr12:56441020-56441040 4.53e-01 20 chr7:151047158-151047178 1.77e-01 20 chr1:155830442-155830462 5.95e-01 20 chr9:86323839-86323859 9.86e-01 20 chr11:128285678-12828569 1.90e-01 20 chr12:54446956-54446976 5.67e-01 20 chr6:154555714-154555734 8.22e-01 20 chr22:42929454-42929474 7.81e-01 20 chr19:50860945-50860965 1.03e-03 11_[+2(3.25e-05)]_1 chr12:131069222-13106924 2.39e-01 20 chr8:142275698-142275718 4.75e-01 20 chr6:159519821-159519841 9.85e-01 20 chr21:18983994-18984014 7.93e-01 20 chr8:142275911-142275931 9.94e-01 20 chr17:73148195-73148215 4.21e-04 2_[+1(1.50e-05)]_10 chr5:35212516-35212536 2.26e-02 1_[+1(6.49e-05)]_11 chr8:81423257-81423277 7.29e-01 20 chr7:128991267-128991287 8.71e-01 20 chr2:8144577-8144597 6.57e-03 6_[+1(1.50e-05)]_6 chr15:45076704-45076724 8.80e-01 20 chrX:48397758-48397778 2.43e-01 20 chr12:25486984-25487004 2.23e-01 20 chr17:29421836-29421856 8.66e-01 20 chr2:240179434-240179454 8.85e-02 1_[+1(6.49e-05)]_11 chr1:8164718-8164738 1.00e+00 20 chr19:47617050-47617070 9.67e-01 20 chr17:57354589-57354609 1.71e-01 20 chr8:62035149-62035169 1.00e+00 20 chr5:14264894-14264914 3.76e-02 20 chr1:20648740-20648760 1.50e-04 4_[+3(1.09e-05)]_8 chr15:100243994-10024401 1.44e-02 20 chr19:2962202-2962222 6.71e-01 20 chr2:127758721-127758741 4.52e-01 20 chr15:85458366-85458386 7.03e-02 2_[+1(9.84e-05)]_10 chr19:46384845-46384865 2.46e-01 20 chr12:110481144-11048116 3.22e-03 12_[+1(3.28e-05)] chr2:44314545-44314565 8.91e-01 20 chr4:159827339-159827359 3.53e-02 5_[+1(3.28e-05)]_7 chrX:135055934-135055954 4.06e-01 20 chr12:56224483-56224503 1.47e-02 20 chr15:86189851-86189871 9.98e-01 20 chr8:49838545-49838565 1.92e-01 20 chr12:7013890-7013910 9.96e-01 20 chr15:99780197-99780217 2.59e-02 10_[+1(3.28e-05)]_2 chr1:28099516-28099536 9.55e-01 20 chr18:43830652-43830672 9.38e-01 20 chr4:171771285-171771305 1.30e-01 20 chr2:28582266-28582286 2.58e-01 20 chr12:102872914-10287293 7.16e-01 20 chr1:16677603-16677623 1.10e-01 2_[+1(6.49e-05)]_10 chr5:172192566-172192586 3.13e-01 20 chr17:70462593-70462613 1.29e-01 20 chrX:47880842-47880862 2.81e-04 1_[+3(1.09e-05)]_11 chr15:72766113-72766133 7.90e-01 20 chr12:100660903-10066092 5.20e-01 20 chr3:107941351-107941371 1.60e-01 20 chr19:2956596-2956616 6.20e-01 20 chr15:76016322-76016342 3.52e-04 9_[+1(1.50e-05)]_3 chr14:25312924-25312944 9.87e-01 20 chr16:70100021-70100041 9.86e-01 20 chr19:46009811-46009831 3.09e-02 [+2(7.35e-05)]_12 chr20:43599241-43599261 3.14e-01 20 chr6:11367018-11367038 6.97e-01 20 chr17:43210365-43210385 5.69e-03 1_[+1(1.50e-05)]_11 chr16:87990003-87990023 7.68e-02 20 chr7:100464954-100464974 4.35e-02 20 chr10:115720627-11572064 5.82e-01 20 chr7:2394007-2394027 9.25e-01 20 chr19:6592623-6592643 2.60e-01 20 chr1:199036802-199036822 1.86e-02 20 chr10:64271639-64271659 6.50e-01 20 chr6:35231483-35231503 2.34e-01 20 chr19:50862242-50862262 1.95e-03 20 chr22:30662250-30662270 1.20e-01 20 chr5:173345080-173345100 3.14e-01 20 chr1:181056907-181056927 4.75e-01 20 chr5:393080-393100 1.04e-03 1_[+5(3.62e-05)]_11 chr12:64616349-64616369 8.48e-02 20 chr4:128930700-128930720 1.01e-03 5_[+1(1.50e-05)]_7 chr2:58676986-58677006 3.31e-01 20 chr10:111981693-11198171 2.06e-01 20 chr19:42772539-42772559 9.99e-01 20 chr10:111981898-11198191 7.30e-03 20 chr5:119793755-119793775 3.54e-02 20 chr19:17666318-17666338 3.75e-03 [+2(1.49e-05)]_12 chr2:202646105-202646125 9.71e-01 20 chr3:183003792-183003812 6.23e-01 20 chr1:39624490-39624510 8.56e-02 20 chr13:43385962-43385982 7.95e-01 20 chr2:198575368-198575388 1.13e-01 20 chr17:53573947-53573967 1.05e-02 20 chr13:81016252-81016272 9.78e-02 20 chr11:77185449-77185469 2.50e-01 20 chr7:122794439-122794459 1.65e-02 4_[+5(2.54e-05)]_8 chr15:45748939-45748959 6.96e-01 20 chr14:20801546-20801566 9.99e-01 20 chr6:151302411-151302431 7.20e-01 20 chr9:123346467-123346487 8.37e-01 20 chrX:43513972-43513992 5.88e-01 20 chr12:14520265-14520285 1.94e-01 20 chr1:168147975-168147995 4.18e-01 20 chr9:114793788-114793808 3.78e-01 20 chr14:91812547-91812567 3.99e-01 20 chr8:27173011-27173031 6.32e-01 20 chr13:31736854-31736874 9.77e-01 20 chr13:79578285-79578305 9.99e-01 20 chr20:4707819-4707839 5.70e-03 [+1(8.24e-05)]_12 chr5:138739345-138739365 4.03e-03 11_[+3(2.38e-05)]_1 chr2:191979358-191979378 9.46e-01 20 chr1:150602150-150602170 9.85e-01 20 chr7:28448987-28449007 1.41e-01 20 chr7:2595268-2595288 1.14e-01 20 chr5:126097855-126097875 5.16e-01 20 chr18:13569138-13569158 5.92e-02 [+1(9.84e-05)]_12 chr6:71567313-71567333 2.35e-01 20 chr20:1306444-1306464 9.94e-01 20 chr1:198904251-198904271 8.27e-01 20 chr18:21197747-21197767 7.47e-01 20 chr15:49094605-49094625 1.96e-02 3_[+1(6.49e-05)]_9 chr14:50053225-50053245 4.24e-02 20 chr7:104909644-104909664 7.73e-01 20 chr8:132839987-132840007 1.24e-02 20 chr17:34431088-34431108 8.26e-01 20 chr16:15068698-15068718 5.32e-01 20 chr6:26026618-26026638 3.51e-01 20 chr12:31004514-31004534 4.80e-01 20 chr15:78396251-78396271 7.59e-01 20 chr6:27832944-27832964 9.60e-01 20 chr19:49653751-49653771 5.95e-01 20 chr12:106696414-10669643 6.46e-01 20 chr5:64331610-64331630 4.04e-01 20 chr13:96705042-96705062 8.25e-01 20 chr5:5751773-5751793 7.66e-01 20 chr8:17013367-17013387 4.14e-03 20 chr5:150284689-150284709 1.35e-03 8_[+4(2.64e-05)]_4 chr1:1624376-1624396 8.67e-01 20 chr11:108535564-10853558 7.85e-01 20 chr5:175964878-175964898 3.52e-01 20 chr4:152803518-152803538 9.83e-01 20 chr5:168843962-168843982 5.98e-01 20 chr4:40327590-40327610 4.83e-02 20 chr19:55574702-55574722 5.96e-02 20 chr5:118556491-118556511 1.27e-02 20 chr1:210520641-210520661 6.07e-01 20 chr1:221882523-221882543 1.46e-01 20 chr3:48701548-48701568 7.99e-01 20 chr16:3115290-3115310 2.57e-01 20 chr7:154998365-154998385 6.27e-05 9_[+2(2.33e-05)]_3 chr6:31587841-31587861 9.68e-01 20 chr1:201865235-201865255 6.00e-03 9_[+4(5.34e-05)]_3 chr17:36134671-36134691 8.98e-01 20 chr9:34178962-34178982 1.23e-01 20 chr1:151254203-151254223 3.02e-04 3_[+2(2.33e-05)]_9 chr19:35739454-35739474 1.58e-04 12_[+3(1.09e-05)] chr7:4764980-4765000 9.35e-02 20 chr1:87510640-87510660 9.77e-01 20 chr7:20240215-20240235 7.84e-01 20 chrX:48858791-48858811 2.00e-01 20 chr3:87553269-87553289 9.42e-01 20 chr17:31082225-31082245 9.82e-01 20 chr2:131582145-131582165 1.32e-03 7_[+5(1.26e-05)]_5 chr16:27561362-27561382 4.45e-03 7_[+2(1.49e-05)]_5 chr15:90640363-90640383 6.84e-01 20 chr21:44597298-44597318 9.65e-01 20 chr4:75375268-75375288 2.27e-01 20 chr10:97026629-97026649 4.49e-01 20 chr17:35790310-35790330 8.61e-01 20 chr7:137725007-137725027 5.60e-01 20 chr1:1677877-1677897 9.77e-02 20 chr2:87011361-87011381 2.42e-02 20 chr7:104653524-104653544 8.12e-01 20 chr5:40486698-40486718 9.38e-01 20 chr13:113455320-11345534 1.00e+00 20 chr8:107669928-107669948 7.47e-01 20 chr3:27711202-27711222 5.24e-02 [+1(6.49e-05)]_12 chr21:47012368-47012388 2.80e-02 [+1(3.28e-05)]_12 chr18:57569480-57569500 2.82e-01 20 chr3:187463402-187463422 9.42e-01 20 chr13:76112124-76112144 9.00e-01 20 chr20:57445918-57445938 8.80e-01 20 chr21:44394222-44394242 3.82e-01 20 chr18:23670714-23670734 1.96e-02 8_[+5(6.15e-05)]_4 chr12:122028207-12202822 8.25e-01 20 chr11:81674232-81674252 2.53e-02 [+1(1.50e-05)]_12 chr12:56521696-56521716 8.64e-01 20 chr11:108338239-10833825 8.02e-02 20 chr4:142142033-142142053 1.45e-01 20 chr6:27863041-27863061 4.51e-01 20 chr19:49164490-49164510 7.68e-01 20 chr5:132087404-132087424 1.00e+00 20 chr8:28726001-28726021 2.68e-02 11_[+1(3.28e-05)]_1 chr17:16882958-16882978 6.56e-04 12_[+4(1.38e-05)] chr8:50969189-50969209 9.28e-01 20 chr8:8144230-8144250 9.48e-01 20 chr2:178029492-178029512 2.27e-03 11_[+4(1.38e-05)]_1 chrX:47077916-47077936 2.85e-01 20 chr8:103597567-103597587 3.64e-01 20 chr8:38243913-38243933 8.58e-01 20 chr3:79068779-79068799 2.86e-01 20 chr1:936304-936324 7.31e-02 20 chr13:49822005-49822025 4.01e-02 20 chr4:38822089-38822109 1.31e-01 20 chr9:133689843-133689863 2.14e-02 4_[+4(4.05e-05)]_8 chr11:129872592-12987261 9.94e-01 20 chr12:27332877-27332897 8.50e-01 20 chr9:37465493-37465513 8.66e-01 20 chr5:137673236-137673256 6.87e-04 4_[+2(5.72e-05)]_8 chr12:58138694-58138714 1.72e-02 20 chr15:70786674-70786694 2.32e-01 20 chr9:100395127-100395147 4.26e-02 20 chr17:7589722-7589742 9.00e-01 20 chr1:75214790-75214810 1.95e-01 20 chr3:169940034-169940054 5.25e-01 20 chr8:29991543-29991563 5.27e-01 20 chr22:39052524-39052544 9.23e-01 20 chr2:74781563-74781583 1.47e-01 20 chr20:1851572-1851592 9.56e-02 20 chr6:156957456-156957476 3.73e-03 9_[+4(1.38e-05)]_3 chr12:111165783-11116580 1.09e-01 20 chr19:4376105-4376125 7.18e-01 20 chr7:99942657-99942677 1.24e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************