******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ATF2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:100244000-10024402 1.0000 20 chr12:110481146-11048116 1.0000 20 chr2:44314528-44314548 1.0000 20 chr5:130872318-130872338 1.0000 20 chr3:101022111-101022131 1.0000 20 chr5:96257463-96257483 1.0000 20 chr19:42772546-42772566 1.0000 20 chr12:64587026-64587046 1.0000 20 chr3:167769495-167769515 1.0000 20 chr4:106226262-106226282 1.0000 20 chr18:57620383-57620403 1.0000 20 chr1:234631369-234631389 1.0000 20 chr3:189923702-189923722 1.0000 20 chr8:145682197-145682217 1.0000 20 chr12:9514793-9514813 1.0000 20 chr16:82689180-82689200 1.0000 20 chr8:103597588-103597608 1.0000 20 chr11:77185422-77185442 1.0000 20 chr3:196190118-196190138 1.0000 20 chr15:99780194-99780214 1.0000 20 chr21:43813445-43813465 1.0000 20 chr4:186228433-186228453 1.0000 20 chr5:137673213-137673233 1.0000 20 chr3:48701572-48701592 1.0000 20 chr6:11467733-11467753 1.0000 20 chr7:4764987-4765007 1.0000 20 chr7:28519301-28519321 1.0000 20 chr1:201865232-201865252 1.0000 20 chr8:6604177-6604197 1.0000 20 chr2:208087871-208087891 1.0000 20 chr3:112209003-112209023 1.0000 20 chr19:2962223-2962243 1.0000 20 chr1:198608155-198608175 1.0000 20 chr19:6592633-6592653 1.0000 20 chr17:31082245-31082265 1.0000 20 chr19:49482295-49482315 1.0000 20 chr2:178029496-178029516 1.0000 20 chr8:81397740-81397760 1.0000 20 chr17:75230107-75230127 1.0000 20 chr8:30932080-30932100 1.0000 20 chr1:184915350-184915370 1.0000 20 chr13:24135519-24135539 1.0000 20 chr14:65636314-65636334 1.0000 20 chr1:65453452-65453472 1.0000 20 chr9:123918946-123918966 1.0000 20 chr12:919977-919997 1.0000 20 chr1:150602142-150602162 1.0000 20 chr7:28448966-28448986 1.0000 20 chr8:6598780-6598800 1.0000 20 chr12:122028235-12202825 1.0000 20 chrX:96489900-96489920 1.0000 20 chr2:62537032-62537052 1.0000 20 chr17:76554620-76554640 1.0000 20 chr2:214031011-214031031 1.0000 20 chr22:38576221-38576241 1.0000 20 chr3:31289911-31289931 1.0000 20 chr15:61194037-61194057 1.0000 20 chr15:57252461-57252481 1.0000 20 chr3:12602538-12602558 1.0000 20 chr10:52216633-52216653 1.0000 20 chr8:107680275-107680295 1.0000 20 chr4:123463759-123463779 1.0000 20 chr3:128523164-128523184 1.0000 20 chr6:16323034-16323054 1.0000 20 chr12:27361150-27361170 1.0000 20 chr15:93168873-93168893 1.0000 20 chr4:40327591-40327611 1.0000 20 chr14:70082500-70082520 1.0000 20 chr8:135585088-135585108 1.0000 20 chr7:20240211-20240231 1.0000 20 chr5:130824333-130824353 1.0000 20 chr2:197242426-197242446 1.0000 20 chr3:4796147-4796167 1.0000 20 chr17:65590451-65590471 1.0000 20 chr8:135612712-135612732 1.0000 20 chr7:76895943-76895963 1.0000 20 chr7:104653528-104653548 1.0000 20 chr3:121813257-121813277 1.0000 20 chr10:26661979-26661999 1.0000 20 chr9:34178955-34178975 1.0000 20 chr5:14156900-14156920 1.0000 20 chr19:18392535-18392555 1.0000 20 chr4:14167377-14167397 1.0000 20 chr18:3256893-3256913 1.0000 20 chr1:59249780-59249800 1.0000 20 chr7:150365667-150365687 1.0000 20 chr19:35909112-35909132 1.0000 20 chr2:61061599-61061619 1.0000 20 chr10:45956621-45956641 1.0000 20 chr2:105931973-105931993 1.0000 20 chr17:43229496-43229516 1.0000 20 chr15:91229849-91229869 1.0000 20 chr14:76669866-76669886 1.0000 20 chr12:58138393-58138413 1.0000 20 chr2:231815326-231815346 1.0000 20 chr6:111809069-111809089 1.0000 20 chr8:61534938-61534958 1.0000 20 chr17:2163634-2163654 1.0000 20 chr9:114823795-114823815 1.0000 20 chr1:66865694-66865714 1.0000 20 chr1:936285-936305 1.0000 20 chr21:15825871-15825891 1.0000 20 chr12:27332904-27332924 1.0000 20 chr11:64691604-64691624 1.0000 20 chr11:68934171-68934191 1.0000 20 chrX:13105575-13105595 1.0000 20 chr5:142642162-142642182 1.0000 20 chr8:27172995-27173015 1.0000 20 chr17:43384876-43384896 1.0000 20 chr12:57941064-57941084 1.0000 20 chr15:41164152-41164172 1.0000 20 chr6:108879765-108879785 1.0000 20 chr10:115426782-11542680 1.0000 20 chr9:132754530-132754550 1.0000 20 chr1:53168754-53168774 1.0000 20 chr4:120159443-120159463 1.0000 20 chr20:48292380-48292400 1.0000 20 chr4:38162754-38162774 1.0000 20 chr1:59249981-59250001 1.0000 20 chrX:18874475-18874495 1.0000 20 chr10:65467280-65467300 1.0000 20 chr4:132347695-132347715 1.0000 20 chr19:50979548-50979568 1.0000 20 chr3:17097006-17097026 1.0000 20 chr12:13052621-13052641 1.0000 20 chr3:185255490-185255510 1.0000 20 chr4:38787799-38787819 1.0000 20 chr1:212769799-212769819 1.0000 20 chr13:99940466-99940486 1.0000 20 chr11:82782957-82782977 1.0000 20 chr4:181124706-181124726 1.0000 20 chr6:43538954-43538974 1.0000 20 chr10:97026630-97026650 1.0000 20 chr2:8944368-8944388 1.0000 20 chr9:112203230-112203250 1.0000 20 chr13:52076443-52076463 1.0000 20 chr6:44205805-44205825 1.0000 20 chr12:65271279-65271299 1.0000 20 chr12:10696294-10696314 1.0000 20 chr4:167087198-167087218 1.0000 20 chr14:51229362-51229382 1.0000 20 chr8:78103849-78103869 1.0000 20 chr11:112043262-11204328 1.0000 20 chr14:71990912-71990932 1.0000 20 chr1:145455455-145455475 1.0000 20 chr5:142593598-142593618 1.0000 20 chr7:28661087-28661107 1.0000 20 chr18:43830620-43830640 1.0000 20 chr1:222828465-222828485 1.0000 20 chr3:29728547-29728567 1.0000 20 chr14:91782276-91782296 1.0000 20 chr3:81837992-81838012 1.0000 20 chr10:22597504-22597524 1.0000 20 chr21:34807288-34807308 1.0000 20 chr2:37798164-37798184 1.0000 20 chr7:55142107-55142127 1.0000 20 chr20:17876448-17876468 1.0000 20 chr5:124238008-124238028 1.0000 20 chr1:155830340-155830360 1.0000 20 chr1:200988788-200988808 1.0000 20 chr20:30287138-30287158 1.0000 20 chr2:88315960-88315980 1.0000 20 chr4:113211657-113211677 1.0000 20 chr18:13569151-13569171 1.0000 20 chr3:105903905-105903925 1.0000 20 chr10:97551565-97551585 1.0000 20 chr6:227922-227942 1.0000 20 chr6:137910733-137910753 1.0000 20 chr1:110359249-110359269 1.0000 20 chr15:74804585-74804605 1.0000 20 chr6:137416961-137416981 1.0000 20 chr17:63019330-63019350 1.0000 20 chr2:98280667-98280687 1.0000 20 chr7:22487558-22487578 1.0000 20 chr6:113966215-113966235 1.0000 20 chr2:101204726-101204746 1.0000 20 chr2:198575353-198575373 1.0000 20 chr5:17229043-17229063 1.0000 20 chr8:116439998-116440018 1.0000 20 chr4:122177712-122177732 1.0000 20 chr21:34814567-34814587 1.0000 20 chr1:160518132-160518152 1.0000 20 chr16:57411435-57411455 1.0000 20 chr10:115785269-11578528 1.0000 20 chr3:105546093-105546113 1.0000 20 chr5:40486727-40486747 1.0000 20 chr2:14443675-14443695 1.0000 20 chr8:130564858-130564878 1.0000 20 chr8:101512393-101512413 1.0000 20 chr10:12349656-12349676 1.0000 20 chr6:37530079-37530099 1.0000 20 chr11:57559855-57559875 1.0000 20 chr5:90355434-90355454 1.0000 20 chr14:61906245-61906265 1.0000 20 chr2:54905251-54905271 1.0000 20 chr2:202016342-202016362 1.0000 20 chr3:5239437-5239457 1.0000 20 chr4:74601116-74601136 1.0000 20 chr2:61193765-61193785 1.0000 20 chr8:128222303-128222323 1.0000 20 chr2:158270026-158270046 1.0000 20 chr3:119281655-119281675 1.0000 20 chr14:60679467-60679487 1.0000 20 chr4:10956555-10956575 1.0000 20 chrX:14045929-14045949 1.0000 20 chr3:178237038-178237058 1.0000 20 chr1:161885163-161885183 1.0000 20 chr6:157012331-157012351 1.0000 20 chr2:157004281-157004301 1.0000 20 chr2:55538707-55538727 1.0000 20 chr1:85065296-85065316 1.0000 20 chr5:142609806-142609826 1.0000 20 chr15:60211708-60211728 1.0000 20 chr4:77703298-77703318 1.0000 20 chr8:60939152-60939172 1.0000 20 chr4:26733138-26733158 1.0000 20 chr12:94602089-94602109 1.0000 20 chr13:100018486-10001850 1.0000 20 chr3:119115021-119115041 1.0000 20 chr19:47617048-47617068 1.0000 20 chr7:23450242-23450262 1.0000 20 chr21:18984005-18984025 1.0000 20 chr2:214022202-214022222 1.0000 20 chr2:25194992-25195012 1.0000 20 chr8:98640403-98640423 1.0000 20 chr12:66441354-66441374 1.0000 20 chr12:64616353-64616373 1.0000 20 chr8:126525507-126525527 1.0000 20 chr3:158073903-158073923 1.0000 20 chr2:75172457-75172477 1.0000 20 chr7:120044277-120044297 1.0000 20 chr1:101875962-101875982 1.0000 20 chr4:183840271-183840291 1.0000 20 chr6:2111572-2111592 1.0000 20 chr6:112062972-112062992 1.0000 20 chr7:6296798-6296818 1.0000 20 chr12:9917538-9917558 1.0000 20 chrX:148280952-148280972 1.0000 20 chr6:16421489-16421509 1.0000 20 chr6:30749798-30749818 1.0000 20 chr21:30606025-30606045 1.0000 20 chr15:55572214-55572234 1.0000 20 chr5:82307994-82308014 1.0000 20 chr3:16631597-16631617 1.0000 20 chr6:229418-229438 1.0000 20 chr7:8155501-8155521 1.0000 20 chr5:139391091-139391111 1.0000 20 chr1:199036809-199036829 1.0000 20 chr7:90446229-90446249 1.0000 20 chr13:33769553-33769573 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ATF2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ATF2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.28 C 0.217 G 0.223 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.28 C 0.217 G 0.223 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-1 width = 8 sites = 28 llr = 241 E-value = 7.3e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:3:3a pos.-specific C :::6::7: probability G :a:17::: matrix T a::3:a:: bits 2.2 2.0 * 1.8 ** * * 1.5 *** * * Relative 1.3 *** *** Entropy 1.1 *** **** (12.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus TA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:64616353-64616373 13 1.44e-05 TCAGCGCTGG TGACGTCA chr2:25194992-25195012 2 1.44e-05 C TGACGTCA TCTGCAGGCC chr21:18984005-18984025 8 1.44e-05 CGCACGG TGACGTCA TCCTG chr19:50979548-50979568 10 1.44e-05 CGGGCTTTA TGACGTCA CAC chr1:936285-936305 13 1.44e-05 CCTGCTGGGA TGACGTCA chr17:43229496-43229516 1 1.44e-05 . TGACGTCA TGCAGCAGCC chr2:44314528-44314548 10 1.44e-05 CCAGTCCGC TGACGTCA CCT chr2:98280667-98280687 12 3.30e-05 GTGTCTGGGA TGATGTCA T chr6:44205805-44205825 3 3.30e-05 GG TGATGTCA CCCGGCCCGC chr5:142642162-142642182 2 3.30e-05 a tgatgtca aactttcaaa chr22:38576221-38576241 4 3.30e-05 TAG TGATGTCA TTCTGCTGA chr2:208087871-208087891 1 3.30e-05 . TGATGTCA TCTTTCTTTT chr5:82307994-82308014 2 6.96e-05 A TGACATCA TAGTTTaggg chr7:120044277-120044297 2 6.96e-05 A TGACATCA TCAACATGGT chr20:17876448-17876468 1 6.96e-05 . TGACATCA CCTTCCCCAC chr11:82782957-82782977 5 6.96e-05 GCAA TGACATCA TCCCTCTG chr1:150602142-150602162 3 6.96e-05 AA TGACGTAA CGATCTACCA chr12:110481146-11048116 11 6.96e-05 ggcaaaggaa tgacatca tc chr2:101204726-101204746 2 1.17e-04 a tgatgtaa tgaaaatgac chr7:20240211-20240231 4 1.17e-04 GAG TGATGTAA TTACCTAAG chr8:81397740-81397760 5 1.17e-04 ctgg tgatgtaa cacccatg chr1:200988788-200988808 12 1.55e-04 TTCCTTATGA TGACATAA A chr2:8944368-8944388 8 1.55e-04 AAAAGTA TGACATAA AGAGT chr3:101022111-101022131 11 1.55e-04 gaacaaacaa tgacataa tc chr15:100244000-10024402 10 1.55e-04 CATTTTTGG TGAGGTCA CCT chr12:58138393-58138413 6 1.66e-04 AACAA TGGCGTCA TCGTGAG chr1:199036809-199036829 6 2.34e-04 AGTGA TGAGGTAA TGTCTTT chr12:64587026-64587046 2 2.52e-04 C TTACGTCA TGCTACCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:64616353-64616373 1.4e-05 12_[+1] chr2:25194992-25195012 1.4e-05 1_[+1]_11 chr21:18984005-18984025 1.4e-05 7_[+1]_5 chr19:50979548-50979568 1.4e-05 9_[+1]_3 chr1:936285-936305 1.4e-05 12_[+1] chr17:43229496-43229516 1.4e-05 [+1]_12 chr2:44314528-44314548 1.4e-05 9_[+1]_3 chr2:98280667-98280687 3.3e-05 11_[+1]_1 chr6:44205805-44205825 3.3e-05 2_[+1]_10 chr5:142642162-142642182 3.3e-05 1_[+1]_11 chr22:38576221-38576241 3.3e-05 3_[+1]_9 chr2:208087871-208087891 3.3e-05 [+1]_12 chr5:82307994-82308014 7e-05 1_[+1]_11 chr7:120044277-120044297 7e-05 1_[+1]_11 chr20:17876448-17876468 7e-05 [+1]_12 chr11:82782957-82782977 7e-05 4_[+1]_8 chr1:150602142-150602162 7e-05 2_[+1]_10 chr12:110481146-11048116 7e-05 10_[+1]_2 chr2:101204726-101204746 0.00012 1_[+1]_11 chr7:20240211-20240231 0.00012 3_[+1]_9 chr8:81397740-81397760 0.00012 4_[+1]_8 chr1:200988788-200988808 0.00016 11_[+1]_1 chr2:8944368-8944388 0.00016 7_[+1]_5 chr3:101022111-101022131 0.00016 10_[+1]_2 chr15:100244000-10024402 0.00016 9_[+1]_3 chr12:58138393-58138413 0.00017 5_[+1]_7 chr1:199036809-199036829 0.00023 5_[+1]_7 chr12:64587026-64587046 0.00025 1_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=28 chr12:64616353-64616373 ( 13) TGACGTCA 1 chr2:25194992-25195012 ( 2) TGACGTCA 1 chr21:18984005-18984025 ( 8) TGACGTCA 1 chr19:50979548-50979568 ( 10) TGACGTCA 1 chr1:936285-936305 ( 13) TGACGTCA 1 chr17:43229496-43229516 ( 1) TGACGTCA 1 chr2:44314528-44314548 ( 10) TGACGTCA 1 chr2:98280667-98280687 ( 12) TGATGTCA 1 chr6:44205805-44205825 ( 3) TGATGTCA 1 chr5:142642162-142642182 ( 2) TGATGTCA 1 chr22:38576221-38576241 ( 4) TGATGTCA 1 chr2:208087871-208087891 ( 1) TGATGTCA 1 chr5:82307994-82308014 ( 2) TGACATCA 1 chr7:120044277-120044297 ( 2) TGACATCA 1 chr20:17876448-17876468 ( 1) TGACATCA 1 chr11:82782957-82782977 ( 5) TGACATCA 1 chr1:150602142-150602162 ( 3) TGACGTAA 1 chr12:110481146-11048116 ( 11) TGACATCA 1 chr2:101204726-101204746 ( 2) TGATGTAA 1 chr7:20240211-20240231 ( 4) TGATGTAA 1 chr8:81397740-81397760 ( 5) TGATGTAA 1 chr1:200988788-200988808 ( 12) TGACATAA 1 chr2:8944368-8944388 ( 8) TGACATAA 1 chr3:101022111-101022131 ( 11) TGACATAA 1 chr15:100244000-10024402 ( 10) TGAGGTCA 1 chr12:58138393-58138413 ( 6) TGGCGTCA 1 chr1:199036809-199036829 ( 6) TGAGGTAA 1 chr12:64587026-64587046 ( 2) TTACGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.07592 E= 7.3e-021 -1145 -1145 -1145 184 -1145 -1145 211 -297 178 -1145 -264 -1145 -1145 157 -164 3 3 -1145 168 -1145 -1145 -1145 -1145 184 3 172 -1145 -1145 183 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 7.3e-021 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.964286 0.035714 0.964286 0.000000 0.035714 0.000000 0.000000 0.642857 0.071429 0.285714 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 regular expression -------------------------------------------------------------------------------- TGA[CT][GA]T[CA]A -------------------------------------------------------------------------------- Time 3.38 secs. ******************************************************************************** ******************************************************************************** MOTIF CHCCTCCC MEME-2 width = 8 sites = 5 llr = 54 E-value = 2.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CHCCTCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C a4aa:aaa probability G :::::::: matrix T :4::a::: bits 2.2 * ** *** 2.0 * ** *** 1.8 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 * ****** (15.5 bits) 0.9 * ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCTCCC consensus T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:59249981-59250001 9 6.34e-06 tccccggt cccctccc cGGG chr8:27172995-27173015 3 6.34e-06 CT CCCCTCCC CCCAACGCAG chr5:139391091-139391111 6 1.45e-05 cctcc ctcctccc acccttt chr9:34178955-34178975 3 1.45e-05 GG CTCCTCCC ATTGGTCCGG chr12:10696294-10696314 11 2.27e-05 cacgcccaca cacctccc tg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:59249981-59250001 6.3e-06 8_[+2]_4 chr8:27172995-27173015 6.3e-06 2_[+2]_10 chr5:139391091-139391111 1.5e-05 5_[+2]_7 chr9:34178955-34178975 1.5e-05 2_[+2]_10 chr12:10696294-10696314 2.3e-05 10_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CHCCTCCC width=8 seqs=5 chr1:59249981-59250001 ( 9) CCCCTCCC 1 chr8:27172995-27173015 ( 3) CCCCTCCC 1 chr5:139391091-139391111 ( 6) CTCCTCCC 1 chr9:34178955-34178975 ( 3) CTCCTCCC 1 chr12:10696294-10696314 ( 11) CACCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.2866 E= 2.5e+001 -897 220 -897 -897 -49 88 -897 51 -897 220 -897 -897 -897 220 -897 -897 -897 -897 -897 184 -897 220 -897 -897 -897 220 -897 -897 -897 220 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.5e+001 0.000000 1.000000 0.000000 0.000000 0.200000 0.400000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CHCCTCCC MEME-2 regular expression -------------------------------------------------------------------------------- C[CTA]CCTCCC -------------------------------------------------------------------------------- Time 4.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCCGCT MEME-3 width = 8 sites = 2 llr = 23 E-value = 3.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCCGCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a:aaa:a: probability G :::::a:: matrix T :::::::a bits 2.2 * ***** 2.0 * ***** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACCCGCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCGCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:104653528-104653548 2 8.41e-06 C CACCCGCT GCTGCAGGAT chr11:77185422-77185442 10 8.41e-06 CTGGGGAAT CACCCGCT TGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCGCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:104653528-104653548 8.4e-06 1_[+3]_11 chr11:77185422-77185442 8.4e-06 9_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCGCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCCGCT width=8 seqs=2 chr7:104653528-104653548 ( 2) CACCCGCT 1 chr11:77185422-77185442 ( 10) CACCCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCGCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 3.8e+003 -765 220 -765 -765 183 -765 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 -765 216 -765 -765 220 -765 -765 -765 -765 -765 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCGCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.8e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCGCT MEME-3 regular expression -------------------------------------------------------------------------------- CACCCGCT -------------------------------------------------------------------------------- Time 4.89 secs. ******************************************************************************** ******************************************************************************** MOTIF WRCAGCTG MEME-4 width = 8 sites = 12 llr = 99 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRCAGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 54:a::3: pos.-specific C 1:8::a:: probability G 26::a::a matrix T 3:3:::8: bits 2.2 ** * 2.0 ** * 1.8 *** * 1.5 *** * Relative 1.3 **** * Entropy 1.1 ******* (11.9 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AGCAGCTG consensus TAT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:214022202-214022222 1 1.15e-05 . AGCAGCTG TGCCAAAGCT chr20:30287138-30287158 7 1.15e-05 AGAAGC AGCAGCTG ATTCAG chr5:124238008-124238028 3 1.15e-05 CA AGCAGCTG CCAAACACCA chr7:55142107-55142127 9 7.23e-05 TGTGGGTT TACAGCTG GCCC chr12:9917538-9917558 8 9.86e-05 CTTATCA GACAGCTG CAGCA chr12:13052621-13052641 2 9.86e-05 c agtagctg tcattattCT chr3:167769495-167769515 13 1.22e-04 CCGTCGTTAT AACAGCAG chr14:76669866-76669886 12 1.33e-04 CTGGTTCTCA TGCAGCAG T chr17:43229496-43229516 9 1.33e-04 TGACGTCA TGCAGCAG CCCC chr13:24135519-24135539 2 1.52e-04 A AATAGCTG AGAGTTAAAG chr14:91782276-91782296 10 1.87e-04 TCCCCACAC CACAGCTG TCA chr18:57620383-57620403 1 1.99e-04 . GGTAGCTG ACAAAAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:214022202-214022222 1.1e-05 [+4]_12 chr20:30287138-30287158 1.1e-05 6_[+4]_6 chr5:124238008-124238028 1.1e-05 2_[+4]_10 chr7:55142107-55142127 7.2e-05 8_[+4]_4 chr12:9917538-9917558 9.9e-05 7_[+4]_5 chr12:13052621-13052641 9.9e-05 1_[+4]_11 chr3:167769495-167769515 0.00012 12_[+4] chr14:76669866-76669886 0.00013 11_[+4]_1 chr17:43229496-43229516 0.00013 8_[+4]_4 chr13:24135519-24135539 0.00015 1_[+4]_11 chr14:91782276-91782296 0.00019 9_[+4]_3 chr18:57620383-57620403 0.0002 [+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRCAGCTG width=8 seqs=12 chr2:214022202-214022222 ( 1) AGCAGCTG 1 chr20:30287138-30287158 ( 7) AGCAGCTG 1 chr5:124238008-124238028 ( 3) AGCAGCTG 1 chr7:55142107-55142127 ( 9) TACAGCTG 1 chr12:9917538-9917558 ( 8) GACAGCTG 1 chr12:13052621-13052641 ( 2) AGTAGCTG 1 chr3:167769495-167769515 ( 13) AACAGCAG 1 chr14:76669866-76669886 ( 12) TGCAGCAG 1 chr17:43229496-43229516 ( 9) TGCAGCAG 1 chr13:24135519-24135539 ( 2) AATAGCTG 1 chr14:91782276-91782296 ( 10) CACAGCTG 1 chr18:57620383-57620403 ( 1) GGTAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.17831 E= 1.9e+003 83 -138 -42 -16 57 -1023 139 -1023 -1023 179 -1023 -16 183 -1023 -1023 -1023 -1023 -1023 217 -1023 -1023 220 -1023 -1023 -17 -1023 -1023 142 -1023 -1023 217 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.9e+003 0.500000 0.083333 0.166667 0.250000 0.416667 0.000000 0.583333 0.000000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRCAGCTG MEME-4 regular expression -------------------------------------------------------------------------------- [AT][GA][CT]AGC[TA]G -------------------------------------------------------------------------------- Time 5.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTGGGAA MEME-5 width = 8 sites = 14 llr = 111 E-value = 3.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTGGGAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :11:::7a pos.-specific C 85:1:::: probability G :219aa3: matrix T 217::::: bits 2.2 ** 2.0 ** 1.8 *** * 1.5 *** * Relative 1.3 * *** * Entropy 1.1 * ***** (11.5 bits) 0.9 * ***** 0.7 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel CCTGGGAA consensus TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:28519301-28519321 6 1.15e-05 TACAA CCTGGGAA TGCCCCA chr15:41164152-41164172 6 2.06e-05 TGACA CCTGGGGA AACCCGT chr4:186228433-186228453 3 3.24e-05 CT CGTGGGAA CCAAGAGACA chr14:61906245-61906265 3 7.11e-05 TG CATGGGAA GTGCCTGGGG chr21:34807288-34807308 3 7.11e-05 TA CATGGGAA CAGTGAATCA chr10:97551565-97551585 13 1.07e-04 CAGAAAGTCC CCAgggaa chr12:57941064-57941084 10 1.07e-04 AGAACGAGG CCAGGGAA TGA chr8:145682197-145682217 7 1.14e-04 ACATCA CCGGGGGA TGACAT chr12:94602089-94602109 7 1.38e-04 ATTGTG CTTGGGGA TGACGT chr4:38787799-38787819 7 1.59e-04 GTGGCT TCTGGGGA CTCCCA chr19:35909112-35909132 8 1.83e-04 TGAGATT TGTGGGAA CAGAC chr8:6604177-6604197 2 1.83e-04 T TGTGGGAA TCTTTGTCTT chr1:145455455-145455475 10 2.06e-04 CAATCAGAG CCTCGGAA AGT chr11:77185422-77185442 1 2.30e-04 . CTGGGGAA TCACCCGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:28519301-28519321 1.1e-05 5_[+5]_7 chr15:41164152-41164172 2.1e-05 5_[+5]_7 chr4:186228433-186228453 3.2e-05 2_[+5]_10 chr14:61906245-61906265 7.1e-05 2_[+5]_10 chr21:34807288-34807308 7.1e-05 2_[+5]_10 chr10:97551565-97551585 0.00011 12_[+5] chr12:57941064-57941084 0.00011 9_[+5]_3 chr8:145682197-145682217 0.00011 6_[+5]_6 chr12:94602089-94602109 0.00014 6_[+5]_6 chr4:38787799-38787819 0.00016 6_[+5]_6 chr19:35909112-35909132 0.00018 7_[+5]_5 chr8:6604177-6604197 0.00018 1_[+5]_11 chr1:145455455-145455475 0.00021 9_[+5]_3 chr11:77185422-77185442 0.00023 [+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTGGGAA width=8 seqs=14 chr7:28519301-28519321 ( 6) CCTGGGAA 1 chr15:41164152-41164172 ( 6) CCTGGGGA 1 chr4:186228433-186228453 ( 3) CGTGGGAA 1 chr14:61906245-61906265 ( 3) CATGGGAA 1 chr21:34807288-34807308 ( 3) CATGGGAA 1 chr10:97551565-97551585 ( 13) CCAGGGAA 1 chr12:57941064-57941084 ( 10) CCAGGGAA 1 chr8:145682197-145682217 ( 7) CCGGGGGA 1 chr12:94602089-94602109 ( 7) CTTGGGGA 1 chr4:38787799-38787819 ( 7) TCTGGGGA 1 chr19:35909112-35909132 ( 8) TGTGGGAA 1 chr8:6604177-6604197 ( 2) TGTGGGAA 1 chr1:145455455-145455475 ( 10) CCTCGGAA 1 chr11:77185422-77185442 ( 1) CTGGGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4605 E= 3.5e+003 -1045 186 -1045 -38 -97 120 -6 -97 -97 -1045 -64 135 -1045 -160 206 -1045 -1045 -1045 217 -1045 -1045 -1045 217 -1045 135 -1045 36 -1045 183 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.5e+003 0.000000 0.785714 0.000000 0.214286 0.142857 0.500000 0.214286 0.142857 0.142857 0.000000 0.142857 0.714286 0.000000 0.071429 0.928571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGAA MEME-5 regular expression -------------------------------------------------------------------------------- [CT][CG]TGGG[AG]A -------------------------------------------------------------------------------- Time 6.99 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:100244000-10024402 6.00e-02 20 chr12:110481146-11048116 1.96e-02 10_[+1(6.96e-05)]_2 chr2:44314528-44314548 1.15e-03 9_[+1(1.44e-05)]_3 chr5:130872318-130872338 6.55e-01 20 chr3:101022111-101022131 1.76e-01 20 chr5:96257463-96257483 3.83e-01 20 chr19:42772546-42772566 1.23e-01 20 chr12:64587026-64587046 1.13e-01 20 chr3:167769495-167769515 2.42e-02 20 chr4:106226262-106226282 4.67e-01 20 chr18:57620383-57620403 3.70e-02 20 chr1:234631369-234631389 9.80e-01 20 chr3:189923702-189923722 9.67e-01 20 chr8:145682197-145682217 9.23e-03 20 chr12:9514793-9514813 2.73e-01 20 chr16:82689180-82689200 3.74e-01 20 chr8:103597588-103597608 5.72e-01 20 chr11:77185422-77185442 8.44e-05 9_[+3(8.41e-06)]_3 chr3:196190118-196190138 1.18e-01 20 chr15:99780194-99780214 8.75e-01 20 chr21:43813445-43813465 7.69e-01 20 chr4:186228433-186228453 5.10e-02 2_[+5(3.24e-05)]_10 chr5:137673213-137673233 2.65e-02 20 chr3:48701572-48701592 6.98e-01 20 chr6:11467733-11467753 7.13e-01 20 chr7:4764987-4765007 7.18e-01 20 chr7:28519301-28519321 2.39e-02 5_[+5(1.15e-05)]_7 chr1:201865232-201865252 5.99e-01 20 chr8:6604177-6604197 1.35e-01 20 chr2:208087871-208087891 5.09e-02 [+1(3.30e-05)]_12 chr3:112209003-112209023 2.29e-01 20 chr19:2962223-2962243 3.60e-01 20 chr1:198608155-198608175 8.98e-01 20 chr19:6592633-6592653 9.95e-01 20 chr17:31082245-31082265 9.94e-01 20 chr19:49482295-49482315 3.62e-01 20 chr2:178029496-178029516 4.44e-01 20 chr8:81397740-81397760 1.44e-02 20 chr17:75230107-75230127 8.16e-01 20 chr8:30932080-30932100 6.84e-01 20 chr1:184915350-184915370 8.22e-01 20 chr13:24135519-24135539 1.02e-01 20 chr14:65636314-65636334 3.28e-01 20 chr1:65453452-65453472 9.93e-01 20 chr9:123918946-123918966 3.53e-01 20 chr12:919977-919997 9.88e-01 20 chr1:150602142-150602162 2.91e-02 2_[+1(6.96e-05)]_10 chr7:28448966-28448986 9.02e-01 20 chr8:6598780-6598800 9.91e-01 20 chr12:122028235-12202825 9.58e-01 20 chrX:96489900-96489920 3.89e-01 20 chr2:62537032-62537052 4.20e-01 20 chr17:76554620-76554640 5.67e-01 20 chr2:214031011-214031031 9.44e-01 20 chr22:38576221-38576241 9.91e-03 3_[+1(3.30e-05)]_9 chr3:31289911-31289931 8.15e-01 20 chr15:61194037-61194057 9.32e-01 20 chr15:57252461-57252481 8.90e-01 20 chr3:12602538-12602558 2.17e-01 20 chr10:52216633-52216653 9.28e-01 20 chr8:107680275-107680295 5.79e-02 20 chr4:123463759-123463779 1.81e-01 20 chr3:128523164-128523184 9.60e-01 20 chr6:16323034-16323054 1.63e-01 20 chr12:27361150-27361170 3.80e-01 20 chr15:93168873-93168893 8.99e-01 20 chr4:40327591-40327611 3.77e-01 20 chr14:70082500-70082520 5.65e-01 20 chr8:135585088-135585108 2.46e-01 20 chr7:20240211-20240231 1.34e-01 20 chr5:130824333-130824353 6.11e-01 20 chr2:197242426-197242446 4.88e-01 20 chr3:4796147-4796167 6.32e-01 20 chr17:65590451-65590471 9.82e-01 20 chr8:135612712-135612732 5.61e-01 20 chr7:76895943-76895963 2.69e-01 20 chr7:104653528-104653548 2.24e-04 1_[+3(8.41e-06)]_11 chr3:121813257-121813277 9.92e-01 20 chr10:26661979-26661999 8.33e-02 20 chr9:34178955-34178975 1.39e-02 2_[+2(1.45e-05)]_10 chr5:14156900-14156920 7.64e-01 20 chr19:18392535-18392555 1.76e-01 20 chr4:14167377-14167397 8.54e-01 20 chr18:3256893-3256913 7.88e-01 20 chr1:59249780-59249800 4.57e-01 20 chr7:150365667-150365687 4.25e-01 20 chr19:35909112-35909132 4.19e-02 20 chr2:61061599-61061619 7.03e-01 20 chr10:45956621-45956641 1.96e-01 20 chr2:105931973-105931993 9.60e-01 20 chr17:43229496-43229516 7.09e-05 [+1(1.44e-05)]_12 chr15:91229849-91229869 8.78e-01 20 chr14:76669866-76669886 4.48e-02 20 chr12:58138393-58138413 4.46e-02 20 chr2:231815326-231815346 9.68e-01 20 chr6:111809069-111809089 7.33e-01 20 chr8:61534938-61534958 9.24e-01 20 chr17:2163634-2163654 8.60e-01 20 chr9:114823795-114823815 9.97e-01 20 chr1:66865694-66865714 4.10e-01 20 chr1:936285-936305 9.17e-04 12_[+1(1.44e-05)] chr21:15825871-15825891 6.43e-01 20 chr12:27332904-27332924 1.04e-01 20 chr11:64691604-64691624 5.99e-01 20 chr11:68934171-68934191 8.71e-01 20 chrX:13105575-13105595 1.63e-01 20 chr5:142642162-142642182 7.82e-02 1_[+1(3.30e-05)]_11 chr8:27172995-27173015 2.35e-03 2_[+2(6.34e-06)]_10 chr17:43384876-43384896 4.71e-01 20 chr12:57941064-57941084 8.13e-02 20 chr15:41164152-41164172 2.41e-04 5_[+5(2.06e-05)]_7 chr6:108879765-108879785 9.24e-01 20 chr10:115426782-11542680 9.72e-01 20 chr9:132754530-132754550 8.60e-01 20 chr1:53168754-53168774 6.73e-01 20 chr4:120159443-120159463 9.18e-01 20 chr20:48292380-48292400 9.80e-01 20 chr4:38162754-38162774 2.38e-01 20 chr1:59249981-59250001 1.07e-02 8_[+2(6.34e-06)]_4 chrX:18874475-18874495 9.63e-01 20 chr10:65467280-65467300 9.68e-01 20 chr4:132347695-132347715 3.83e-01 20 chr19:50979548-50979568 3.07e-02 9_[+1(1.44e-05)]_3 chr3:17097006-17097026 6.80e-01 20 chr12:13052621-13052641 3.30e-02 1_[+4(9.86e-05)]_11 chr3:185255490-185255510 4.88e-01 20 chr4:38787799-38787819 8.06e-03 20 chr1:212769799-212769819 2.32e-01 20 chr13:99940466-99940486 8.57e-01 20 chr11:82782957-82782977 4.37e-03 4_[+1(6.96e-05)]_8 chr4:181124706-181124726 4.10e-01 20 chr6:43538954-43538974 3.96e-01 20 chr10:97026630-97026650 9.76e-01 20 chr2:8944368-8944388 1.99e-01 20 chr9:112203230-112203250 8.03e-01 20 chr13:52076443-52076463 6.77e-01 20 chr6:44205805-44205825 2.19e-04 2_[+1(3.30e-05)]_10 chr12:65271279-65271299 3.34e-01 20 chr12:10696294-10696314 6.73e-03 10_[+2(2.27e-05)]_2 chr4:167087198-167087218 7.63e-01 20 chr14:51229362-51229382 8.43e-01 20 chr8:78103849-78103869 7.49e-01 20 chr11:112043262-11204328 4.25e-01 20 chr14:71990912-71990932 9.45e-01 20 chr1:145455455-145455475 1.04e-01 20 chr5:142593598-142593618 9.89e-01 20 chr7:28661087-28661107 4.06e-01 20 chr18:43830620-43830640 9.94e-01 20 chr1:222828465-222828485 3.27e-01 20 chr3:29728547-29728567 9.62e-01 20 chr14:91782276-91782296 2.10e-03 20 chr3:81837992-81838012 8.65e-01 20 chr10:22597504-22597524 9.36e-01 20 chr21:34807288-34807308 2.28e-02 2_[+5(7.11e-05)]_10 chr2:37798164-37798184 4.72e-01 20 chr7:55142107-55142127 2.46e-02 8_[+4(7.23e-05)]_4 chr20:17876448-17876468 1.04e-03 [+1(6.96e-05)]_12 chr5:124238008-124238028 1.89e-03 2_[+4(1.15e-05)]_10 chr1:155830340-155830360 6.40e-01 20 chr1:200988788-200988808 1.54e-01 20 chr20:30287138-30287158 3.80e-03 6_[+4(1.15e-05)]_6 chr2:88315960-88315980 9.30e-01 20 chr4:113211657-113211677 6.58e-01 20 chr18:13569151-13569171 2.24e-02 20 chr3:105903905-105903925 4.86e-01 20 chr10:97551565-97551585 3.71e-02 20 chr6:227922-227942 6.96e-01 20 chr6:137910733-137910753 3.17e-01 20 chr1:110359249-110359269 6.33e-01 20 chr15:74804585-74804605 2.04e-01 20 chr6:137416961-137416981 6.61e-01 20 chr17:63019330-63019350 5.54e-01 20 chr2:98280667-98280687 4.26e-03 11_[+1(3.30e-05)]_1 chr7:22487558-22487578 3.47e-01 20 chr6:113966215-113966235 6.31e-01 20 chr2:101204726-101204746 1.38e-01 20 chr2:198575353-198575373 9.89e-01 20 chr5:17229043-17229063 3.71e-01 20 chr8:116439998-116440018 4.90e-01 20 chr4:122177712-122177732 8.77e-01 20 chr21:34814567-34814587 7.50e-01 20 chr1:160518132-160518152 9.47e-01 20 chr16:57411435-57411455 5.86e-01 20 chr10:115785269-11578528 7.66e-01 20 chr3:105546093-105546113 8.02e-01 20 chr5:40486727-40486747 8.80e-01 20 chr2:14443675-14443695 9.94e-01 20 chr8:130564858-130564878 2.19e-01 20 chr8:101512393-101512413 4.10e-01 20 chr10:12349656-12349676 6.69e-01 20 chr6:37530079-37530099 7.78e-01 20 chr11:57559855-57559875 8.18e-01 20 chr5:90355434-90355454 5.71e-01 20 chr14:61906245-61906265 6.37e-02 2_[+5(7.11e-05)]_10 chr2:54905251-54905271 8.33e-01 20 chr2:202016342-202016362 9.14e-01 20 chr3:5239437-5239457 3.49e-01 20 chr4:74601116-74601136 1.11e-01 20 chr2:61193765-61193785 9.14e-01 20 chr8:128222303-128222323 9.87e-01 20 chr2:158270026-158270046 9.42e-01 20 chr3:119281655-119281675 9.98e-01 20 chr14:60679467-60679487 3.28e-01 20 chr4:10956555-10956575 6.70e-01 20 chrX:14045929-14045949 2.37e-01 20 chr3:178237038-178237058 9.61e-01 20 chr1:161885163-161885183 9.09e-01 20 chr6:157012331-157012351 6.05e-01 20 chr2:157004281-157004301 4.12e-01 20 chr2:55538707-55538727 2.81e-01 20 chr1:85065296-85065316 9.68e-01 20 chr5:142609806-142609826 5.27e-01 20 chr15:60211708-60211728 3.15e-01 20 chr4:77703298-77703318 7.72e-01 20 chr8:60939152-60939172 8.18e-01 20 chr4:26733138-26733158 8.51e-01 20 chr12:94602089-94602109 1.34e-01 20 chr13:100018486-10001850 7.77e-01 20 chr3:119115021-119115041 5.72e-01 20 chr19:47617048-47617068 6.54e-01 20 chr7:23450242-23450262 8.29e-01 20 chr21:18984005-18984025 4.08e-03 7_[+1(1.44e-05)]_5 chr2:214022202-214022222 1.49e-02 [+4(1.15e-05)]_12 chr2:25194992-25195012 1.87e-03 1_[+1(1.44e-05)]_11 chr8:98640403-98640423 9.31e-01 20 chr12:66441354-66441374 9.09e-01 20 chr12:64616353-64616373 4.14e-03 12_[+1(1.44e-05)] chr8:126525507-126525527 1.52e-01 20 chr3:158073903-158073923 1.71e-01 20 chr2:75172457-75172477 8.66e-01 20 chr7:120044277-120044297 6.84e-02 1_[+1(6.96e-05)]_11 chr1:101875962-101875982 5.12e-01 20 chr4:183840271-183840291 7.79e-01 20 chr6:2111572-2111592 5.54e-01 20 chr6:112062972-112062992 9.69e-01 20 chr7:6296798-6296818 4.77e-01 20 chr12:9917538-9917558 2.29e-02 7_[+4(9.86e-05)]_5 chrX:148280952-148280972 3.50e-01 20 chr6:16421489-16421509 6.70e-01 20 chr6:30749798-30749818 1.36e-01 20 chr21:30606025-30606045 9.42e-01 20 chr15:55572214-55572234 9.93e-01 20 chr5:82307994-82308014 6.59e-02 1_[+1(6.96e-05)]_11 chr3:16631597-16631617 6.00e-01 20 chr6:229418-229438 6.84e-01 20 chr7:8155501-8155521 9.88e-01 20 chr5:139391091-139391111 7.61e-03 5_[+2(1.45e-05)]_7 chr1:199036809-199036829 9.23e-02 20 chr7:90446229-90446249 9.09e-01 20 chr13:33769553-33769573 3.74e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************