******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ASH2L.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:142557832-142557852 1.0000 20 chr10:115439701-11543972 1.0000 20 chr6:106960444-106960464 1.0000 20 chr5:64778766-64778786 1.0000 20 chr1:47082341-47082361 1.0000 20 chr20:8583572-8583592 1.0000 20 chr15:22448911-22448931 1.0000 20 chr10:99408678-99408698 1.0000 20 chr12:83080445-83080465 1.0000 20 chr7:43798622-43798642 1.0000 20 chr10:17601648-17601668 1.0000 20 chr6:157008349-157008369 1.0000 20 chrX:44732794-44732814 1.0000 20 chr11:34022772-34022792 1.0000 20 chr7:106408834-106408854 1.0000 20 chr9:32526300-32526320 1.0000 20 chr12:123926371-12392639 1.0000 20 chr12:57636609-57636629 1.0000 20 chr10:94608390-94608410 1.0000 20 chr9:102669145-102669165 1.0000 20 chr10:6019613-6019633 1.0000 20 chr14:31676463-31676483 1.0000 20 chr22:18632789-18632809 1.0000 20 chr5:172204843-172204863 1.0000 20 chr9:100881442-100881462 1.0000 20 chr5:98109884-98109904 1.0000 20 chr18:74534505-74534525 1.0000 20 chr2:214631348-214631368 1.0000 20 chr6:29856034-29856054 1.0000 20 chr9:21995148-21995168 1.0000 20 chr1:111329829-111329849 1.0000 20 chr18:9095627-9095647 1.0000 20 chr1:97187396-97187416 1.0000 20 chr4:147096929-147096949 1.0000 20 chr3:88081050-88081070 1.0000 20 chr18:24559062-24559082 1.0000 20 chr2:152118145-152118165 1.0000 20 chr9:31347137-31347157 1.0000 20 chr14:24716388-24716408 1.0000 20 chr2:136289239-136289259 1.0000 20 chr7:155437569-155437589 1.0000 20 chr17:48499061-48499081 1.0000 20 chr10:93169882-93169902 1.0000 20 chr6:28696912-28696932 1.0000 20 chr1:59434254-59434274 1.0000 20 chr10:92980601-92980621 1.0000 20 chr6:27720779-27720799 1.0000 20 chr6:118972183-118972203 1.0000 20 chr8:124253330-124253350 1.0000 20 chr4:177241216-177241236 1.0000 20 chr2:172750711-172750731 1.0000 20 chr12:10517478-10517498 1.0000 20 chr14:71787840-71787860 1.0000 20 chr4:169401630-169401650 1.0000 20 chr9:32526502-32526522 1.0000 20 chr10:45957886-45957906 1.0000 20 chr7:11653353-11653373 1.0000 20 chrX:44732997-44733017 1.0000 20 chr1:158978605-158978625 1.0000 20 chr14:86401048-86401068 1.0000 20 chr5:81075051-81075071 1.0000 20 chr10:73669502-73669522 1.0000 20 chr3:122283162-122283182 1.0000 20 chr3:143388361-143388381 1.0000 20 chr11:93862360-93862380 1.0000 20 chr6:159331855-159331875 1.0000 20 chr6:126101886-126101906 1.0000 20 chr6:126101681-126101701 1.0000 20 chr12:11698968-11698988 1.0000 20 chr16:85790313-85790333 1.0000 20 chr7:72971836-72971856 1.0000 20 chr2:179343515-179343535 1.0000 20 chrX:18693307-18693327 1.0000 20 chr14:100705965-10070598 1.0000 20 chr10:76499087-76499107 1.0000 20 chr3:49276332-49276352 1.0000 20 chr6:28863695-28863715 1.0000 20 chr10:3847789-3847809 1.0000 20 chr13:79980025-79980045 1.0000 20 chr10:91174326-91174346 1.0000 20 chr16:77997767-77997787 1.0000 20 chr3:197121355-197121375 1.0000 20 chr11:43157696-43157716 1.0000 20 chr1:66766865-66766885 1.0000 20 chr2:64455525-64455545 1.0000 20 chr10:5727143-5727163 1.0000 20 chr12:32259948-32259968 1.0000 20 chr4:170533424-170533444 1.0000 20 chr11:124670150-12467017 1.0000 20 chr17:28618856-28618876 1.0000 20 chr6:26322718-26322738 1.0000 20 chr6:52930381-52930401 1.0000 20 chr15:84652868-84652888 1.0000 20 chr1:175111433-175111453 1.0000 20 chr16:57023503-57023523 1.0000 20 chr3:122399541-122399561 1.0000 20 chr18:31280711-31280731 1.0000 20 chr12:31743481-31743501 1.0000 20 chr5:95297509-95297529 1.0000 20 chr5:96143594-96143614 1.0000 20 chr18:23670358-23670378 1.0000 20 chr4:48781893-48781913 1.0000 20 chr4:156874955-156874975 1.0000 20 chr3:183354234-183354254 1.0000 20 chr14:64702619-64702639 1.0000 20 chr12:104888373-10488839 1.0000 20 chr4:186508926-186508946 1.0000 20 chr2:242455058-242455078 1.0000 20 chr12:76953138-76953158 1.0000 20 chr6:121656042-121656062 1.0000 20 chr1:65534305-65534325 1.0000 20 chr9:6750638-6750658 1.0000 20 chr14:104028841-10402886 1.0000 20 chr1:197745900-197745920 1.0000 20 chr16:53132775-53132795 1.0000 20 chr15:44955602-44955622 1.0000 20 chr11:102345359-10234537 1.0000 20 chr3:112280342-112280362 1.0000 20 chr13:43566630-43566650 1.0000 20 chr5:131439315-131439335 1.0000 20 chr11:58910393-58910413 1.0000 20 chr12:46123998-46124018 1.0000 20 chr14:97264053-97264073 1.0000 20 chr5:88179090-88179110 1.0000 20 chr2:68479190-68479210 1.0000 20 chr10:5726889-5726909 1.0000 20 chr6:20410122-20410142 1.0000 20 chr10:65225644-65225664 1.0000 20 chr6:101329035-101329055 1.0000 20 chr5:72144355-72144375 1.0000 20 chr4:106817137-106817157 1.0000 20 chr20:414395-414415 1.0000 20 chr2:179343175-179343195 1.0000 20 chr19:7242857-7242877 1.0000 20 chr13:33311429-33311449 1.0000 20 chr14:60631746-60631766 1.0000 20 chr3:181649977-181649997 1.0000 20 chr13:76124058-76124078 1.0000 20 chr17:72685133-72685153 1.0000 20 chr2:225903019-225903039 1.0000 20 chr17:33868158-33868178 1.0000 20 chr2:7049849-7049869 1.0000 20 chr6:14075487-14075507 1.0000 20 chr18:54318764-54318784 1.0000 20 chr2:67624576-67624596 1.0000 20 chr7:130597983-130598003 1.0000 20 chr12:102271217-10227123 1.0000 20 chr8:61566482-61566502 1.0000 20 chr1:87523589-87523609 1.0000 20 chr6:79577345-79577365 1.0000 20 chr1:67396146-67396166 1.0000 20 chr12:112820113-11282013 1.0000 20 chr7:148638279-148638299 1.0000 20 chr6:163834513-163834533 1.0000 20 chr22:31365655-31365675 1.0000 20 chr22:37558454-37558474 1.0000 20 chr22:50753243-50753263 1.0000 20 chr11:46615340-46615360 1.0000 20 chr3:18782482-18782502 1.0000 20 chr9:37080059-37080079 1.0000 20 chr14:74180590-74180610 1.0000 20 chr22:31890264-31890284 1.0000 20 chr1:22192596-22192616 1.0000 20 chr7:148660121-148660141 1.0000 20 chr18:158665-158685 1.0000 20 chr1:32538641-32538661 1.0000 20 chr8:67026136-67026156 1.0000 20 chr18:3384890-3384910 1.0000 20 chr5:49963729-49963749 1.0000 20 chr1:153631212-153631232 1.0000 20 chr4:111118292-111118312 1.0000 20 chr7:134143563-134143583 1.0000 20 chr11:47422241-47422261 1.0000 20 chr14:60651051-60651071 1.0000 20 chr12:46662994-46663014 1.0000 20 chr4:18023257-18023277 1.0000 20 chr7:24635414-24635434 1.0000 20 chr13:74601495-74601515 1.0000 20 chr9:6412790-6412810 1.0000 20 chr15:59981387-59981407 1.0000 20 chr6:42742916-42742936 1.0000 20 chr2:113239585-113239605 1.0000 20 chr8:103786536-103786556 1.0000 20 chr7:102789748-102789768 1.0000 20 chr9:37036971-37036991 1.0000 20 chr1:112019654-112019674 1.0000 20 chr13:22636185-22636205 1.0000 20 chr5:132362120-132362140 1.0000 20 chr2:232540128-232540148 1.0000 20 chr1:182558169-182558189 1.0000 20 chr12:95466998-95467018 1.0000 20 chr3:142166776-142166796 1.0000 20 chr10:22605146-22605166 1.0000 20 chr12:122906663-12290668 1.0000 20 chr6:34360361-34360381 1.0000 20 chr13:48575288-48575308 1.0000 20 chr2:163175115-163175135 1.0000 20 chr5:131746588-131746608 1.0000 20 chr2:30670200-30670220 1.0000 20 chr2:28613443-28613463 1.0000 20 chr8:95835616-95835636 1.0000 20 chr10:104885437-10488545 1.0000 20 chr8:101571760-101571780 1.0000 20 chr9:18769335-18769355 1.0000 20 chr9:137750302-137750322 1.0000 20 chr4:47487482-47487502 1.0000 20 chr2:232539865-232539885 1.0000 20 chr8:124169739-124169759 1.0000 20 chr17:55082539-55082559 1.0000 20 chr1:98386347-98386367 1.0000 20 chr12:32908617-32908637 1.0000 20 chr8:124286525-124286545 1.0000 20 chr2:105654643-105654663 1.0000 20 chr12:118814513-11881453 1.0000 20 chr8:90914413-90914433 1.0000 20 chr5:108064079-108064099 1.0000 20 chr9:98079846-98079866 1.0000 20 chr18:44497353-44497373 1.0000 20 chr5:77656909-77656929 1.0000 20 chr2:242801932-242801952 1.0000 20 chr14:78082892-78082912 1.0000 20 chr19:58238865-58238885 1.0000 20 chr3:186500860-186500880 1.0000 20 chr9:138831366-138831386 1.0000 20 chr12:64798623-64798643 1.0000 20 chr10:22540736-22540756 1.0000 20 chr7:8008678-8008698 1.0000 20 chr2:20776625-20776645 1.0000 20 chr19:1848331-1848351 1.0000 20 chr8:91658524-91658544 1.0000 20 chr18:48680266-48680286 1.0000 20 chr11:1872128-1872148 1.0000 20 chr4:88312204-88312224 1.0000 20 chr3:111697977-111697997 1.0000 20 chr2:216878122-216878142 1.0000 20 chr2:203736322-203736342 1.0000 20 chr3:49481807-49481827 1.0000 20 chr12:116997194-11699721 1.0000 20 chr6:87861804-87861824 1.0000 20 chr2:86263647-86263667 1.0000 20 chr11:57092516-57092536 1.0000 20 chr6:28831684-28831704 1.0000 20 chr1:11072884-11072904 1.0000 20 chr5:44809350-44809370 1.0000 20 chr1:11159736-11159756 1.0000 20 chr13:53029828-53029848 1.0000 20 chr7:65274688-65274708 1.0000 20 chr12:97301076-97301096 1.0000 20 chr17:47785180-47785200 1.0000 20 chr10:82232018-82232038 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ASH2L/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ASH2L.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.218 C 0.292 G 0.3 T 0.19 Background letter frequencies (from file dataset with add-one prior applied): A 0.218 C 0.292 G 0.3 T 0.19 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATTTATKT MEME-1 width = 8 sites = 10 llr = 88 E-value = 4.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTATKT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8:3:831: pos.-specific C :::3:::: probability G ::::::5: matrix T 2a77274a bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * Relative 1.4 ****** * Entropy 1.2 ****** * (12.7 bits) 1.0 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTTATGT consensus T ACTAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATKT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:60651051-60651071 7 1.09e-05 ACTATT ATTTAATT CAGTCT chr10:82232018-82232038 13 1.90e-05 atctccctta atttaagt chr13:33311429-33311449 10 2.63e-05 aagcttatt attttttt ctg chr1:66766865-66766885 8 2.63e-05 GAAGCAG ATTTTTTT CTATG chr3:88081050-88081070 10 3.79e-05 TATGCATGC ATTCATGT TAT chr7:43798622-43798642 12 3.79e-05 TAGTTTCGGT TTTTATGT A chr3:143388361-143388381 13 4.05e-05 ATCCTGAAGC ATTTATAT chr9:31347137-31347157 2 6.49e-05 T ATACATTT ACACGCAGGG chr9:37036971-37036991 11 9.15e-05 GCAAGCACAG ATACATGT GC chr6:28696912-28696932 9 1.50e-04 GTATACTG TTATAAGT ATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATKT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:60651051-60651071 1.1e-05 6_[+1]_6 chr10:82232018-82232038 1.9e-05 12_[+1] chr13:33311429-33311449 2.6e-05 9_[+1]_3 chr1:66766865-66766885 2.6e-05 7_[+1]_5 chr3:88081050-88081070 3.8e-05 9_[+1]_3 chr7:43798622-43798642 3.8e-05 11_[+1]_1 chr3:143388361-143388381 4e-05 12_[+1] chr9:31347137-31347157 6.5e-05 1_[+1]_11 chr9:37036971-37036991 9.1e-05 10_[+1]_2 chr6:28696912-28696932 0.00015 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATKT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTATKT width=8 seqs=10 chr14:60651051-60651071 ( 7) ATTTAATT 1 chr10:82232018-82232038 ( 13) ATTTAAGT 1 chr13:33311429-33311449 ( 10) ATTTTTTT 1 chr1:66766865-66766885 ( 8) ATTTTTTT 1 chr3:88081050-88081070 ( 10) ATTCATGT 1 chr7:43798622-43798642 ( 12) TTTTATGT 1 chr3:143388361-143388381 ( 13) ATTTATAT 1 chr9:31347137-31347157 ( 2) ATACATTT 1 chr9:37036971-37036991 ( 11) ATACATGT 1 chr6:28696912-28696932 ( 9) TTATAAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATKT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.81663 E= 4.5e+001 187 -997 -997 8 -997 -997 -997 240 46 -997 -997 188 -997 4 -997 188 187 -997 -997 8 46 -997 -997 188 -113 -997 74 107 -997 -997 -997 240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATKT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.5e+001 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.300000 0.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.700000 0.800000 0.000000 0.000000 0.200000 0.300000 0.000000 0.000000 0.700000 0.100000 0.000000 0.500000 0.400000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTATKT MEME-1 regular expression -------------------------------------------------------------------------------- [AT]T[TA][TC][AT][TA][GT]T -------------------------------------------------------------------------------- Time 1.94 secs. ******************************************************************************** ******************************************************************************** MOTIF ARRAGAAA MEME-2 width = 8 sites = 15 llr = 122 E-value = 7.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARRAGAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8349:a9a pos.-specific C :1:::::: probability G 156:8::: matrix T 1::12:1: bits 2.4 2.2 * * 1.9 * * * 1.7 * *** Relative 1.4 * *** Entropy 1.2 * ***** (11.7 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGAGAAA consensus AA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRAGAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:6750638-6750658 12 1.33e-05 TTTGACACTG AGGAGAAA A chr4:88312204-88312224 5 3.26e-05 GTCC AGAAGAAA TTTCATCC chr6:121656042-121656062 7 3.26e-05 AGTACG AAGAGAAA GTGATC chr19:7242857-7242877 11 3.96e-05 GGCCTAAAAA AAAAGAAA GA chr2:179343175-179343195 6 3.96e-05 CAGAT AAAAGAAA ACAATGA chr11:102345359-10234537 13 4.81e-05 AAACTTTGGA AGGATAAA chr10:99408678-99408698 5 6.03e-05 TTTA AGAATAAA TTGATTCT chr10:65225644-65225664 10 8.71e-05 CAGCGCCAC ACAAGAAA ACT chr3:18782482-18782502 9 9.87e-05 AAAACACG AGGAGATA AACA chr11:43157696-43157716 12 9.87e-05 TGAGGCCAAA AGGAGATA A chr2:86263647-86263667 8 1.40e-04 gagggat gggagaaa ggaag chr5:64778766-64778786 2 1.40e-04 G GGGAGAAA ATGCCCAGTG chr17:33868158-33868178 5 2.19e-04 CAGA ACAATAAA CCCAAACA chr12:10517478-10517498 1 2.19e-04 . tagagaaa ttggccgtgt chr11:47422241-47422261 5 2.53e-04 GAGA AAGTGAAA AGGAAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRAGAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:6750638-6750658 1.3e-05 11_[+2]_1 chr4:88312204-88312224 3.3e-05 4_[+2]_8 chr6:121656042-121656062 3.3e-05 6_[+2]_6 chr19:7242857-7242877 4e-05 10_[+2]_2 chr2:179343175-179343195 4e-05 5_[+2]_7 chr11:102345359-10234537 4.8e-05 12_[+2] chr10:99408678-99408698 6e-05 4_[+2]_8 chr10:65225644-65225664 8.7e-05 9_[+2]_3 chr3:18782482-18782502 9.9e-05 8_[+2]_4 chr11:43157696-43157716 9.9e-05 11_[+2]_1 chr2:86263647-86263667 0.00014 7_[+2]_5 chr5:64778766-64778786 0.00014 1_[+2]_11 chr17:33868158-33868178 0.00022 4_[+2]_8 chr12:10517478-10517498 0.00022 [+2]_12 chr11:47422241-47422261 0.00025 4_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRAGAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARRAGAAA width=8 seqs=15 chr9:6750638-6750658 ( 12) AGGAGAAA 1 chr4:88312204-88312224 ( 5) AGAAGAAA 1 chr6:121656042-121656062 ( 7) AAGAGAAA 1 chr19:7242857-7242877 ( 11) AAAAGAAA 1 chr2:179343175-179343195 ( 6) AAAAGAAA 1 chr11:102345359-10234537 ( 13) AGGATAAA 1 chr10:99408678-99408698 ( 5) AGAATAAA 1 chr10:65225644-65225664 ( 10) ACAAGAAA 1 chr3:18782482-18782502 ( 9) AGGAGATA 1 chr11:43157696-43157716 ( 12) AGGAGATA 1 chr2:86263647-86263667 ( 8) GGGAGAAA 1 chr5:64778766-64778786 ( 2) GGGAGAAA 1 chr17:33868158-33868178 ( 5) ACAATAAA 1 chr12:10517478-10517498 ( 1) TAGAGAAA 1 chr11:47422241-47422261 ( 5) AAGTGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRAGAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.0312 E= 7.7e+000 187 -1055 -117 -151 61 -113 83 -1055 87 -1055 100 -1055 209 -1055 -1055 -151 -1055 -1055 141 8 219 -1055 -1055 -1055 199 -1055 -1055 -51 219 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRAGAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 7.7e+000 0.800000 0.000000 0.133333 0.066667 0.333333 0.133333 0.533333 0.000000 0.400000 0.000000 0.600000 0.000000 0.933333 0.000000 0.000000 0.066667 0.000000 0.000000 0.800000 0.200000 1.000000 0.000000 0.000000 0.000000 0.866667 0.000000 0.000000 0.133333 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRAGAAA MEME-2 regular expression -------------------------------------------------------------------------------- A[GA][GA]A[GT]AAA -------------------------------------------------------------------------------- Time 2.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TATTGCCT MEME-3 width = 8 sites = 4 llr = 43 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTGCCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a3::::3 pos.-specific C :::::aa: probability G ::::a::: matrix T a:8a:::8 bits 2.4 * * 2.2 ** * 1.9 ** * 1.7 ** **** Relative 1.4 ******** Entropy 1.2 ******** (15.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATTGCCT consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGCCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:84652868-84652888 9 7.27e-06 GCATTCTT TATTGCCT TCAA chr18:24559062-24559082 4 7.27e-06 TGC TATTGCCT TTTGGAAAT chr10:3847789-3847809 10 2.39e-05 TACATAAAA TAATGCCT CAG chr6:126101681-126101701 8 2.39e-05 CTCTTCC TATTGCCA TGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGCCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:84652868-84652888 7.3e-06 8_[+3]_4 chr18:24559062-24559082 7.3e-06 3_[+3]_9 chr10:3847789-3847809 2.4e-05 9_[+3]_3 chr6:126101681-126101701 2.4e-05 7_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGCCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTGCCT width=8 seqs=4 chr15:84652868-84652888 ( 9) TATTGCCT 1 chr18:24559062-24559082 ( 4) TATTGCCT 1 chr10:3847789-3847809 ( 10) TAATGCCT 1 chr6:126101681-126101701 ( 8) TATTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGCCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 1.5e+003 -865 -865 -865 239 219 -865 -865 -865 19 -865 -865 198 -865 -865 -865 239 -865 -865 173 -865 -865 178 -865 -865 -865 178 -865 -865 19 -865 -865 198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGCCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGCCT MEME-3 regular expression -------------------------------------------------------------------------------- TA[TA]TGCC[TA] -------------------------------------------------------------------------------- Time 5.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TTACAWAT MEME-4 width = 8 sites = 3 llr = 35 E-value = 4.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTACAWAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:a7a: pos.-specific C :::a:::: probability G :::::::: matrix T aa:::3:a bits 2.4 ** * 2.2 *** * ** 1.9 *** * ** 1.7 ***** ** Relative 1.4 ******** Entropy 1.2 ******** (16.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTACAAAT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAWAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:103786536-103786556 1 4.52e-06 . TTACAAAT ACGTACTTAA chr6:14075487-14075507 3 4.52e-06 TT TTACAAAT GCCATGCAGC chr2:242455058-242455078 11 8.47e-06 TACGGGACGT TTACATAT GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAWAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:103786536-103786556 4.5e-06 [+4]_12 chr6:14075487-14075507 4.5e-06 2_[+4]_10 chr2:242455058-242455078 8.5e-06 10_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAWAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTACAWAT width=8 seqs=3 chr8:103786536-103786556 ( 1) TTACAAAT 1 chr6:14075487-14075507 ( 3) TTACAAAT 1 chr2:242455058-242455078 ( 11) TTACATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAWAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.73854 E= 4.6e+002 -823 -823 -823 239 -823 -823 -823 239 219 -823 -823 -823 -823 177 -823 -823 219 -823 -823 -823 161 -823 -823 81 219 -823 -823 -823 -823 -823 -823 239 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAWAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 4.6e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAWAT MEME-4 regular expression -------------------------------------------------------------------------------- TTACA[AT]AT -------------------------------------------------------------------------------- Time 8.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCTGGG MEME-5 width = 8 sites = 7 llr = 67 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::3a:::: probability G aa7::aaa matrix T ::::a::: bits 2.4 * 2.2 * 1.9 * 1.7 ** ***** Relative 1.4 ** ***** Entropy 1.2 ** ***** (13.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCTGGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:182558169-182558189 6 4.04e-05 GCCAA GGGCTGGG AGCTCCC chr11:46615340-46615360 5 4.04e-05 TGCC GGGCTGGG CCTCCCAG chr12:46123998-46124018 3 4.04e-05 TG GGGCTGGG GGGGTGGCCC chr14:104028841-10402886 4 4.04e-05 ACG GGGCTGGG CGCTGGCGA chr10:92980601-92980621 6 4.04e-05 CGGGC GGGCTGGG GAGCTGC chr9:37080059-37080079 4 7.98e-05 CGC GGCCTGGG ACCCCTGCC chr10:5727143-5727163 10 7.98e-05 TCCCTCCTC GGCCTGGG CGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:182558169-182558189 4e-05 5_[+5]_7 chr11:46615340-46615360 4e-05 4_[+5]_8 chr12:46123998-46124018 4e-05 2_[+5]_10 chr14:104028841-10402886 4e-05 3_[+5]_9 chr10:92980601-92980621 4e-05 5_[+5]_7 chr9:37080059-37080079 8e-05 3_[+5]_9 chr10:5727143-5727163 8e-05 9_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCTGGG width=8 seqs=7 chr1:182558169-182558189 ( 6) GGGCTGGG 1 chr11:46615340-46615360 ( 5) GGGCTGGG 1 chr12:46123998-46124018 ( 3) GGGCTGGG 1 chr14:104028841-10402886 ( 4) GGGCTGGG 1 chr10:92980601-92980621 ( 6) GGGCTGGG 1 chr9:37080059-37080079 ( 4) GGCCTGGG 1 chr10:5727143-5727163 ( 10) GGCCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.69928 E= 1.5e+003 -945 -945 173 -945 -945 -945 173 -945 -945 -3 125 -945 -945 178 -945 -945 -945 -945 -945 240 -945 -945 173 -945 -945 -945 173 -945 -945 -945 173 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGGG MEME-5 regular expression -------------------------------------------------------------------------------- GG[GC]CTGGG -------------------------------------------------------------------------------- Time 11.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:142557832-142557852 9.82e-01 20 chr10:115439701-11543972 9.22e-01 20 chr6:106960444-106960464 8.66e-01 20 chr5:64778766-64778786 2.11e-02 20 chr1:47082341-47082361 8.48e-01 20 chr20:8583572-8583592 7.70e-01 20 chr15:22448911-22448931 1.76e-01 20 chr10:99408678-99408698 2.55e-04 4_[+2(6.03e-05)]_8 chr12:83080445-83080465 3.18e-01 20 chr7:43798622-43798642 1.64e-02 11_[+1(3.79e-05)]_1 chr10:17601648-17601668 3.08e-01 20 chr6:157008349-157008369 9.42e-01 20 chrX:44732794-44732814 3.96e-01 20 chr11:34022772-34022792 5.83e-01 20 chr7:106408834-106408854 5.70e-01 20 chr9:32526300-32526320 1.47e-01 20 chr12:123926371-12392639 9.55e-02 20 chr12:57636609-57636629 2.29e-02 20 chr10:94608390-94608410 7.71e-02 20 chr9:102669145-102669165 9.35e-01 20 chr10:6019613-6019633 9.26e-01 20 chr14:31676463-31676483 8.88e-01 20 chr22:18632789-18632809 9.99e-01 20 chr5:172204843-172204863 7.03e-03 20 chr9:100881442-100881462 9.98e-01 20 chr5:98109884-98109904 4.92e-01 20 chr18:74534505-74534525 9.28e-01 20 chr2:214631348-214631368 5.51e-01 20 chr6:29856034-29856054 9.86e-01 20 chr9:21995148-21995168 3.31e-01 20 chr1:111329829-111329849 3.47e-02 20 chr18:9095627-9095647 2.62e-01 20 chr1:97187396-97187416 8.32e-01 20 chr4:147096929-147096949 8.21e-01 20 chr3:88081050-88081070 8.15e-03 9_[+1(3.79e-05)]_3 chr18:24559062-24559082 3.36e-04 3_[+3(7.27e-06)]_9 chr2:152118145-152118165 9.92e-01 20 chr9:31347137-31347157 3.74e-03 1_[+1(6.49e-05)]_11 chr14:24716388-24716408 5.48e-01 20 chr2:136289239-136289259 5.34e-01 20 chr7:155437569-155437589 5.47e-01 20 chr17:48499061-48499081 2.00e-02 20 chr10:93169882-93169902 8.79e-01 20 chr6:28696912-28696932 1.16e-03 20 chr1:59434254-59434274 3.36e-01 20 chr10:92980601-92980621 9.17e-02 5_[+5(4.04e-05)]_7 chr6:27720779-27720799 7.01e-02 20 chr6:118972183-118972203 3.34e-01 20 chr8:124253330-124253350 8.99e-01 20 chr4:177241216-177241236 6.79e-01 20 chr2:172750711-172750731 8.73e-01 20 chr12:10517478-10517498 8.93e-03 20 chr14:71787840-71787860 9.98e-01 20 chr4:169401630-169401650 8.82e-01 20 chr9:32526502-32526522 5.22e-01 20 chr10:45957886-45957906 2.23e-01 20 chr7:11653353-11653373 1.48e-01 20 chrX:44732997-44733017 9.89e-01 20 chr1:158978605-158978625 1.65e-02 20 chr14:86401048-86401068 9.67e-01 20 chr5:81075051-81075071 9.36e-01 20 chr10:73669502-73669522 3.63e-01 20 chr3:122283162-122283182 4.57e-01 20 chr3:143388361-143388381 1.20e-02 12_[+1(4.05e-05)] chr11:93862360-93862380 3.24e-01 20 chr6:159331855-159331875 8.76e-01 20 chr6:126101886-126101906 1.09e-01 20 chr6:126101681-126101701 3.26e-03 7_[+3(2.39e-05)]_5 chr12:11698968-11698988 9.19e-01 20 chr16:85790313-85790333 8.26e-01 20 chr7:72971836-72971856 7.75e-01 20 chr2:179343515-179343535 4.59e-01 20 chrX:18693307-18693327 9.19e-01 20 chr14:100705965-10070598 3.39e-01 20 chr10:76499087-76499107 2.07e-01 20 chr3:49276332-49276352 4.74e-01 20 chr6:28863695-28863715 4.40e-01 20 chr10:3847789-3847809 5.46e-04 9_[+3(2.39e-05)]_3 chr13:79980025-79980045 8.78e-01 20 chr10:91174326-91174346 4.44e-01 20 chr16:77997767-77997787 5.68e-01 20 chr3:197121355-197121375 8.83e-01 20 chr11:43157696-43157716 3.98e-02 11_[+2(9.87e-05)]_1 chr1:66766865-66766885 3.22e-03 7_[+1(2.63e-05)]_5 chr2:64455525-64455545 7.60e-01 20 chr10:5727143-5727163 1.36e-01 9_[+5(7.98e-05)]_3 chr12:32259948-32259968 9.53e-01 20 chr4:170533424-170533444 5.60e-01 20 chr11:124670150-12467017 9.74e-01 20 chr17:28618856-28618876 9.30e-01 20 chr6:26322718-26322738 7.97e-01 20 chr6:52930381-52930401 9.91e-01 20 chr15:84652868-84652888 9.24e-04 8_[+3(7.27e-06)]_4 chr1:175111433-175111453 4.37e-01 20 chr16:57023503-57023523 5.38e-01 20 chr3:122399541-122399561 5.53e-01 20 chr18:31280711-31280731 9.79e-02 20 chr12:31743481-31743501 4.19e-01 20 chr5:95297509-95297529 5.66e-01 20 chr5:96143594-96143614 9.33e-01 20 chr18:23670358-23670378 8.89e-01 20 chr4:48781893-48781913 6.50e-01 20 chr4:156874955-156874975 9.96e-01 20 chr3:183354234-183354254 9.98e-01 20 chr14:64702619-64702639 2.62e-01 20 chr12:104888373-10488839 5.11e-01 20 chr4:186508926-186508946 7.44e-01 20 chr2:242455058-242455078 4.80e-04 10_[+4(8.47e-06)]_2 chr12:76953138-76953158 1.00e+00 20 chr6:121656042-121656062 3.35e-02 6_[+2(3.26e-05)]_6 chr1:65534305-65534325 1.64e-02 20 chr9:6750638-6750658 1.03e-02 11_[+2(1.33e-05)]_1 chr14:104028841-10402886 1.17e-01 3_[+5(4.04e-05)]_9 chr1:197745900-197745920 7.44e-02 20 chr16:53132775-53132795 9.12e-01 20 chr15:44955602-44955622 9.99e-01 20 chr11:102345359-10234537 3.78e-02 12_[+2(4.81e-05)] chr3:112280342-112280362 3.10e-01 20 chr13:43566630-43566650 9.66e-01 20 chr5:131439315-131439335 6.81e-01 20 chr11:58910393-58910413 7.61e-01 20 chr12:46123998-46124018 1.06e-01 2_[+5(4.04e-05)]_10 chr14:97264053-97264073 6.28e-01 20 chr5:88179090-88179110 9.51e-01 20 chr2:68479190-68479210 1.00e+00 20 chr10:5726889-5726909 4.64e-01 20 chr6:20410122-20410142 8.73e-01 20 chr10:65225644-65225664 4.23e-02 9_[+2(8.71e-05)]_3 chr6:101329035-101329055 4.69e-01 20 chr5:72144355-72144375 9.98e-01 20 chr4:106817137-106817157 4.64e-01 20 chr20:414395-414415 7.18e-01 20 chr2:179343175-179343195 2.13e-02 5_[+2(3.96e-05)]_7 chr19:7242857-7242877 1.68e-02 10_[+2(3.96e-05)]_2 chr13:33311429-33311449 2.30e-03 9_[+1(2.63e-05)]_3 chr14:60631746-60631766 9.58e-01 20 chr3:181649977-181649997 1.05e-01 20 chr13:76124058-76124078 9.98e-01 20 chr17:72685133-72685153 1.88e-02 20 chr2:225903019-225903039 1.52e-01 20 chr17:33868158-33868178 5.19e-02 20 chr2:7049849-7049869 4.38e-01 20 chr6:14075487-14075507 9.68e-06 2_[+4(4.52e-06)]_10 chr18:54318764-54318784 2.45e-01 20 chr2:67624576-67624596 8.73e-01 20 chr7:130597983-130598003 2.92e-01 20 chr12:102271217-10227123 8.01e-01 20 chr8:61566482-61566502 6.63e-01 20 chr1:87523589-87523609 8.72e-02 20 chr6:79577345-79577365 8.13e-01 20 chr1:67396146-67396166 2.82e-01 20 chr12:112820113-11282013 9.78e-01 20 chr7:148638279-148638299 2.49e-01 20 chr6:163834513-163834533 9.97e-01 20 chr22:31365655-31365675 8.54e-01 20 chr22:37558454-37558474 4.80e-01 20 chr22:50753243-50753263 9.52e-01 20 chr11:46615340-46615360 1.07e-01 4_[+5(4.04e-05)]_8 chr3:18782482-18782502 7.50e-02 8_[+2(9.87e-05)]_4 chr9:37080059-37080079 1.47e-01 3_[+5(7.98e-05)]_9 chr14:74180590-74180610 9.94e-01 20 chr22:31890264-31890284 2.42e-01 20 chr1:22192596-22192616 1.48e-01 20 chr7:148660121-148660141 1.46e-02 20 chr18:158665-158685 9.90e-01 20 chr1:32538641-32538661 1.90e-01 20 chr8:67026136-67026156 8.90e-02 20 chr18:3384890-3384910 2.89e-01 20 chr5:49963729-49963749 9.94e-01 20 chr1:153631212-153631232 7.73e-02 20 chr4:111118292-111118312 9.99e-01 20 chr7:134143563-134143583 8.76e-01 20 chr11:47422241-47422261 1.54e-01 20 chr14:60651051-60651071 3.05e-03 6_[+1(1.09e-05)]_6 chr12:46662994-46663014 5.88e-01 20 chr4:18023257-18023277 9.02e-01 20 chr7:24635414-24635434 3.86e-01 20 chr13:74601495-74601515 8.84e-01 20 chr9:6412790-6412810 1.00e+00 20 chr15:59981387-59981407 6.40e-01 20 chr6:42742916-42742936 6.65e-01 20 chr2:113239585-113239605 1.00e+00 20 chr8:103786536-103786556 1.55e-04 [+4(4.52e-06)]_12 chr7:102789748-102789768 9.60e-01 20 chr9:37036971-37036991 9.05e-03 10_[+1(9.15e-05)]_2 chr1:112019654-112019674 5.66e-01 20 chr13:22636185-22636205 3.73e-01 20 chr5:132362120-132362140 9.99e-01 20 chr2:232540128-232540148 2.35e-01 20 chr1:182558169-182558189 4.55e-02 5_[+5(4.04e-05)]_7 chr12:95466998-95467018 1.00e+00 20 chr3:142166776-142166796 4.01e-01 20 chr10:22605146-22605166 6.03e-01 20 chr12:122906663-12290668 6.79e-01 20 chr6:34360361-34360381 8.54e-01 20 chr13:48575288-48575308 3.76e-01 20 chr2:163175115-163175135 6.69e-01 20 chr5:131746588-131746608 5.94e-01 20 chr2:30670200-30670220 1.00e+00 20 chr2:28613443-28613463 9.60e-01 20 chr8:95835616-95835636 8.90e-01 20 chr10:104885437-10488545 1.06e-01 20 chr8:101571760-101571780 9.85e-01 20 chr9:18769335-18769355 7.00e-01 20 chr9:137750302-137750322 2.64e-01 20 chr4:47487482-47487502 6.21e-01 20 chr2:232539865-232539885 1.47e-01 20 chr8:124169739-124169759 8.94e-01 20 chr17:55082539-55082559 6.96e-01 20 chr1:98386347-98386367 9.13e-01 20 chr12:32908617-32908637 1.55e-01 20 chr8:124286525-124286545 4.49e-01 20 chr2:105654643-105654663 9.98e-01 20 chr12:118814513-11881453 9.35e-01 20 chr8:90914413-90914433 5.39e-01 20 chr5:108064079-108064099 2.68e-01 20 chr9:98079846-98079866 6.31e-01 20 chr18:44497353-44497373 9.89e-01 20 chr5:77656909-77656929 4.40e-01 20 chr2:242801932-242801952 1.03e-01 20 chr14:78082892-78082912 9.84e-01 20 chr19:58238865-58238885 8.38e-01 20 chr3:186500860-186500880 5.63e-01 20 chr9:138831366-138831386 9.86e-01 20 chr12:64798623-64798643 8.11e-01 20 chr10:22540736-22540756 8.54e-01 20 chr7:8008678-8008698 9.91e-01 20 chr2:20776625-20776645 2.15e-01 20 chr19:1848331-1848351 5.11e-01 20 chr8:91658524-91658544 7.73e-01 20 chr18:48680266-48680286 9.84e-01 20 chr11:1872128-1872148 9.86e-01 20 chr4:88312204-88312224 1.65e-03 4_[+2(3.26e-05)]_8 chr3:111697977-111697997 1.00e+00 20 chr2:216878122-216878142 9.99e-01 20 chr2:203736322-203736342 9.39e-01 20 chr3:49481807-49481827 3.69e-01 20 chr12:116997194-11699721 9.95e-01 20 chr6:87861804-87861824 7.59e-01 20 chr2:86263647-86263667 8.82e-03 20 chr11:57092516-57092536 8.06e-01 20 chr6:28831684-28831704 3.02e-01 20 chr1:11072884-11072904 8.97e-01 20 chr5:44809350-44809370 8.99e-01 20 chr1:11159736-11159756 9.56e-01 20 chr13:53029828-53029848 4.63e-01 20 chr7:65274688-65274708 7.59e-01 20 chr12:97301076-97301096 9.14e-01 20 chr17:47785180-47785200 9.05e-01 20 chr10:82232018-82232038 4.56e-03 12_[+1(1.90e-05)] -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************