******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ARNT.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:133205001-133205021 1.0000 20 chr2:122356583-122356603 1.0000 20 chr7:150077777-150077797 1.0000 20 chr4:165857181-165857201 1.0000 20 chr15:39785802-39785822 1.0000 20 chr15:97658912-97658932 1.0000 20 chr10:84038323-84038343 1.0000 20 chr21:21372261-21372281 1.0000 20 chr22:36646542-36646562 1.0000 20 chr14:93527914-93527934 1.0000 20 chr16:57625243-57625263 1.0000 20 chr2:191022838-191022858 1.0000 20 chr8:38267411-38267431 1.0000 20 chr4:39765839-39765859 1.0000 20 chr8:68737205-68737225 1.0000 20 chr14:93226123-93226143 1.0000 20 chr3:11684090-11684110 1.0000 20 chr17:48084885-48084905 1.0000 20 chr2:67691177-67691197 1.0000 20 chr15:75626082-75626102 1.0000 20 chr6:167371960-167371980 1.0000 20 chr4:155954214-155954234 1.0000 20 chr16:47351981-47352001 1.0000 20 chr6:157971373-157971393 1.0000 20 chr12:31960184-31960204 1.0000 20 chr1:28913598-28913618 1.0000 20 chr14:93631735-93631755 1.0000 20 chr6:137955529-137955549 1.0000 20 chr8:95453342-95453362 1.0000 20 chr7:97252831-97252851 1.0000 20 chr13:24540947-24540967 1.0000 20 chr2:11890156-11890176 1.0000 20 chr15:86236348-86236368 1.0000 20 chr6:27020273-27020293 1.0000 20 chr11:58870002-58870022 1.0000 20 chr15:65104319-65104339 1.0000 20 chr19:16560225-16560245 1.0000 20 chr2:149877233-149877253 1.0000 20 chr15:37307403-37307423 1.0000 20 chr9:37986878-37986898 1.0000 20 chr5:157346547-157346567 1.0000 20 chr5:142382175-142382195 1.0000 20 chr10:50747296-50747316 1.0000 20 chr22:50317285-50317305 1.0000 20 chr8:50164323-50164343 1.0000 20 chr10:7499746-7499766 1.0000 20 chrX:11758092-11758112 1.0000 20 chr20:53734217-53734237 1.0000 20 chr17:70611376-70611396 1.0000 20 chr4:150496298-150496318 1.0000 20 chr19:2087302-2087322 1.0000 20 chr17:38468773-38468793 1.0000 20 chr2:34902468-34902488 1.0000 20 chr15:91440544-91440564 1.0000 20 chr2:203534772-203534792 1.0000 20 chr4:71271728-71271748 1.0000 20 chr4:693354-693374 1.0000 20 chr10:100168809-10016882 1.0000 20 chr6:30726576-30726596 1.0000 20 chr15:59775340-59775360 1.0000 20 chr12:8123426-8123446 1.0000 20 chr1:67680681-67680701 1.0000 20 chr14:97908962-97908982 1.0000 20 chr3:30691214-30691234 1.0000 20 chr22:43659877-43659897 1.0000 20 chr3:56807469-56807489 1.0000 20 chr3:178232067-178232087 1.0000 20 chr4:186317607-186317627 1.0000 20 chr2:46131446-46131466 1.0000 20 chr12:127634751-12763477 1.0000 20 chr12:92566801-92566821 1.0000 20 chr1:46791395-46791415 1.0000 20 chr10:30725303-30725323 1.0000 20 chr10:94870416-94870436 1.0000 20 chr2:178499818-178499838 1.0000 20 chrX:106916366-106916386 1.0000 20 chr1:65885510-65885530 1.0000 20 chr3:156361774-156361794 1.0000 20 chr17:70585285-70585305 1.0000 20 chr4:116877463-116877483 1.0000 20 chr4:136190746-136190766 1.0000 20 chr7:124996148-124996168 1.0000 20 chr12:15724036-15724056 1.0000 20 chr1:46797920-46797940 1.0000 20 chr14:97844077-97844097 1.0000 20 chr4:89744890-89744910 1.0000 20 chr10:103662281-10366230 1.0000 20 chrX:11808077-11808097 1.0000 20 chr1:70819470-70819490 1.0000 20 chr19:6601810-6601830 1.0000 20 chr2:137003986-137004006 1.0000 20 chr17:76684243-76684263 1.0000 20 chr14:73102220-73102240 1.0000 20 chr2:14446594-14446614 1.0000 20 chr17:1117031-1117051 1.0000 20 chrX:1702143-1702163 1.0000 20 chr18:47839242-47839262 1.0000 20 chr12:9950774-9950794 1.0000 20 chr4:48213949-48213969 1.0000 20 chr1:223724623-223724643 1.0000 20 chr5:177751500-177751520 1.0000 20 chr7:135241456-135241476 1.0000 20 chr11:36016187-36016207 1.0000 20 chrX:1654227-1654247 1.0000 20 chr1:11990036-11990056 1.0000 20 chr1:113479879-113479899 1.0000 20 chr20:49067669-49067689 1.0000 20 chr11:117685658-11768567 1.0000 20 chr17:76149757-76149777 1.0000 20 chrX:24531775-24531795 1.0000 20 chr15:66446483-66446503 1.0000 20 chr4:153225631-153225651 1.0000 20 chr16:11501552-11501572 1.0000 20 chr17:72631750-72631770 1.0000 20 chr6:131385087-131385107 1.0000 20 chr18:52732200-52732220 1.0000 20 chr19:34850255-34850275 1.0000 20 chr10:82349788-82349808 1.0000 20 chr2:65615457-65615477 1.0000 20 chr1:160714406-160714426 1.0000 20 chr16:28199165-28199185 1.0000 20 chr6:25945561-25945581 1.0000 20 chr11:60796003-60796023 1.0000 20 chr6:33096259-33096279 1.0000 20 chr6:144472467-144472487 1.0000 20 chrX:10079574-10079594 1.0000 20 chr7:134856277-134856297 1.0000 20 chr14:34407699-34407719 1.0000 20 chr6:154579437-154579457 1.0000 20 chr3:134918161-134918181 1.0000 20 chr1:198904810-198904830 1.0000 20 chr1:27951946-27951966 1.0000 20 chr4:94222002-94222022 1.0000 20 chr4:75579616-75579636 1.0000 20 chrX:9949657-9949677 1.0000 20 chrX:38741156-38741176 1.0000 20 chr12:6556063-6556083 1.0000 20 chr3:95075929-95075949 1.0000 20 chr3:72031907-72031927 1.0000 20 chr5:75878250-75878270 1.0000 20 chrX:9915628-9915648 1.0000 20 chr5:159886401-159886421 1.0000 20 chr7:114195065-114195085 1.0000 20 chr3:16472851-16472871 1.0000 20 chr8:100845416-100845436 1.0000 20 chr10:104474112-10447413 1.0000 20 chr5:142793902-142793922 1.0000 20 chr14:24838114-24838134 1.0000 20 chr2:136742624-136742644 1.0000 20 chr2:99087617-99087637 1.0000 20 chr6:51325043-51325063 1.0000 20 chr3:81810217-81810237 1.0000 20 chr15:39746112-39746132 1.0000 20 chr2:38323553-38323573 1.0000 20 chr8:130559237-130559257 1.0000 20 chr14:96043616-96043636 1.0000 20 chr2:25633507-25633527 1.0000 20 chr5:130548430-130548450 1.0000 20 chr7:28549485-28549505 1.0000 20 chr17:7854939-7854959 1.0000 20 chr17:36781318-36781338 1.0000 20 chr20:15966618-15966638 1.0000 20 chr10:14630220-14630240 1.0000 20 chr1:67740483-67740503 1.0000 20 chr11:120369972-12036999 1.0000 20 chr2:232046726-232046746 1.0000 20 chr1:171584846-171584866 1.0000 20 chr1:115599080-115599100 1.0000 20 chr4:159739336-159739356 1.0000 20 chr7:1102077-1102097 1.0000 20 chrX:35461290-35461310 1.0000 20 chr19:4968578-4968598 1.0000 20 chr6:52363648-52363668 1.0000 20 chr17:46555832-46555852 1.0000 20 chrX:7028995-7029015 1.0000 20 chr6:39357002-39357022 1.0000 20 chr6:150657702-150657722 1.0000 20 chr6:44041171-44041191 1.0000 20 chr18:67553492-67553512 1.0000 20 chr12:106695685-10669570 1.0000 20 chr16:48400556-48400576 1.0000 20 chr11:61137324-61137344 1.0000 20 chr18:23761684-23761704 1.0000 20 chr3:122492900-122492920 1.0000 20 chr1:6474658-6474678 1.0000 20 chr11:79117598-79117618 1.0000 20 chr3:88191384-88191404 1.0000 20 chr6:33524811-33524831 1.0000 20 chr1:154836329-154836349 1.0000 20 chr18:4101197-4101217 1.0000 20 chr10:92765177-92765197 1.0000 20 chr17:78239509-78239529 1.0000 20 chrX:84636796-84636816 1.0000 20 chr12:131576005-13157602 1.0000 20 chr16:48630325-48630345 1.0000 20 chr21:43429206-43429226 1.0000 20 chr14:76618949-76618969 1.0000 20 chr17:1496322-1496342 1.0000 20 chr10:121357543-12135756 1.0000 20 chr12:57082029-57082049 1.0000 20 chr7:128595079-128595099 1.0000 20 chr6:3027402-3027422 1.0000 20 chr21:45342218-45342238 1.0000 20 chr1:40840274-40840294 1.0000 20 chr8:11280338-11280358 1.0000 20 chr2:88906119-88906139 1.0000 20 chrX:106920407-106920427 1.0000 20 chr20:47405403-47405423 1.0000 20 chr1:226548321-226548341 1.0000 20 chr5:159861182-159861202 1.0000 20 chr20:52523847-52523867 1.0000 20 chr3:59232646-59232666 1.0000 20 chr18:29073276-29073296 1.0000 20 chr1:183811816-183811836 1.0000 20 chr3:117198143-117198163 1.0000 20 chr2:217471641-217471661 1.0000 20 chr10:11288745-11288765 1.0000 20 chr9:21357854-21357874 1.0000 20 chr1:88616244-88616264 1.0000 20 chr10:85931921-85931941 1.0000 20 chr1:68215855-68215875 1.0000 20 chr9:881013-881033 1.0000 20 chr12:125423230-12542325 1.0000 20 chr14:102291368-10229138 1.0000 20 chr6:15387485-15387505 1.0000 20 chr17:27055360-27055380 1.0000 20 chr3:86439045-86439065 1.0000 20 chr2:74259537-74259557 1.0000 20 chr1:1609644-1609664 1.0000 20 chr17:76768002-76768022 1.0000 20 chr2:38304174-38304194 1.0000 20 chr8:142142068-142142088 1.0000 20 chr10:102772779-10277279 1.0000 20 chr17:55432909-55432929 1.0000 20 chr7:120400304-120400324 1.0000 20 chr14:51203831-51203851 1.0000 20 chr6:2866740-2866760 1.0000 20 chr1:223363879-223363899 1.0000 20 chr11:115944822-11594484 1.0000 20 chr7:45018820-45018840 1.0000 20 chr2:69809553-69809573 1.0000 20 chr7:126336934-126336954 1.0000 20 chr6:6943314-6943334 1.0000 20 chr20:52368065-52368085 1.0000 20 chr2:221899074-221899094 1.0000 20 chr8:70556446-70556466 1.0000 20 chr10:30786776-30786796 1.0000 20 chr10:31673485-31673505 1.0000 20 chr17:55416126-55416146 1.0000 20 chr1:76192666-76192686 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ARNT/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ARNT.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.248 C 0.256 G 0.246 T 0.25 Background letter frequencies (from file dataset with add-one prior applied): A 0.248 C 0.256 G 0.246 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BTGCRTGC MEME-1 width = 8 sites = 32 llr = 246 E-value = 6.9e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTGCRTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::4::1 pos.-specific C 3::9:1:8 probability G 5:a:5:a: matrix T 3a:119:1 bits 2.0 * * 1.8 ** * 1.6 *** * 1.4 *** ** Relative 1.2 *** ** Entropy 1.0 *** *** (11.1 bits) 0.8 *** *** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGCGTGC consensus T A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGCRTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:57082029-57082049 11 1.50e-05 GAGAATGAAC GTGCGTGC GT chr16:48400556-48400576 4 1.50e-05 CTA GTGCGTGC AGAGGTTTA chr7:135241456-135241476 9 1.50e-05 ggttacag gtgcgtgc cgcc chrX:106916366-106916386 3 1.50e-05 gc gtgcgtgc gtgtgtgtgt chr2:178499818-178499838 4 1.50e-05 gca gtgcgtgc acaacctcc chr2:122356583-122356603 1 1.50e-05 . gtgcgtgc caccacgccc chr3:95075929-95075949 6 3.01e-05 caccg gtgcatgc agcacct chr1:67680681-67680701 7 3.01e-05 ccactg gtgcatgc agcctc chr20:52368065-52368085 11 4.54e-05 TGAGCCTGCT TTGCGTGC TT chr1:1609644-1609664 12 4.54e-05 GTTTATGCAC TTGCGTGC G chr4:39765839-39765859 3 4.54e-05 tg ttgcgtgc ctgtagtcta chr1:160714406-160714426 9 7.63e-05 AAGAGTAG TTGCATGC TAGC chr20:15966618-15966638 4 9.21e-05 ggg ctgcatgc gccggtggt chr20:53734217-53734237 10 9.21e-05 tgacagggg ctgcatgc acc chr4:165857181-165857201 11 9.21e-05 gtgacagggg ctgcatgc ac chr3:72031907-72031927 8 1.22e-04 tgctgct gtgcgtga ctcac chr1:171584846-171584866 5 1.83e-04 ccgc ctgcttgc tcaaatca chr19:6601810-6601830 10 1.83e-04 acgtaggcc ctgcttgc tca chr4:116877463-116877483 3 1.83e-04 ca gtgcatga aacccctgtc chr8:95453342-95453362 8 1.83e-04 gtactcc ctgcttgc tcaaa chr14:93631735-93631755 11 1.83e-04 cacgtaccgc ctgcttgc tc chr10:31673485-31673505 3 2.13e-04 GA TTGCGTGA GAAACATTGG chr2:99087617-99087637 3 2.59e-04 gt gtgcgtgt atgtggtgtg chr14:34407699-34407719 4 2.59e-04 GCG CTGCGTGA GGGTGGCAG chr7:45018820-45018840 7 3.50e-04 ACCCGT TTGCACGC CAGGGG chr3:59232646-59232666 10 3.50e-04 GATATGCGT GTGTGTGC ACT chr7:128595079-128595099 4 3.50e-04 tgc gtgcatgt gtCATTTGC chr11:60796003-60796023 10 3.50e-04 GTATGCACC TTGCACGC ACC chr17:1117031-1117051 4 3.50e-04 AGA TTGCACGC AAACTGTGC chr5:142382175-142382195 8 3.50e-04 TGTCAGC TTGCACGC CATCT chr22:36646542-36646562 3 3.81e-04 ct gtgtatgc agcccctgtc chr5:130548430-130548450 3 5.48e-04 ta GTACgtgc cagaatacaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGCRTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57082029-57082049 1.5e-05 10_[+1]_2 chr16:48400556-48400576 1.5e-05 3_[+1]_9 chr7:135241456-135241476 1.5e-05 8_[+1]_4 chrX:106916366-106916386 1.5e-05 2_[+1]_10 chr2:178499818-178499838 1.5e-05 3_[+1]_9 chr2:122356583-122356603 1.5e-05 [+1]_12 chr3:95075929-95075949 3e-05 5_[+1]_7 chr1:67680681-67680701 3e-05 6_[+1]_6 chr20:52368065-52368085 4.5e-05 10_[+1]_2 chr1:1609644-1609664 4.5e-05 11_[+1]_1 chr4:39765839-39765859 4.5e-05 2_[+1]_10 chr1:160714406-160714426 7.6e-05 8_[+1]_4 chr20:15966618-15966638 9.2e-05 3_[+1]_9 chr20:53734217-53734237 9.2e-05 9_[+1]_3 chr4:165857181-165857201 9.2e-05 10_[+1]_2 chr3:72031907-72031927 0.00012 7_[+1]_5 chr1:171584846-171584866 0.00018 4_[+1]_8 chr19:6601810-6601830 0.00018 9_[+1]_3 chr4:116877463-116877483 0.00018 2_[+1]_10 chr8:95453342-95453362 0.00018 7_[+1]_5 chr14:93631735-93631755 0.00018 10_[+1]_2 chr10:31673485-31673505 0.00021 2_[+1]_10 chr2:99087617-99087637 0.00026 2_[+1]_10 chr14:34407699-34407719 0.00026 3_[+1]_9 chr7:45018820-45018840 0.00035 6_[+1]_6 chr3:59232646-59232666 0.00035 9_[+1]_3 chr7:128595079-128595099 0.00035 3_[+1]_9 chr11:60796003-60796023 0.00035 9_[+1]_3 chr17:1117031-1117051 0.00035 3_[+1]_9 chr5:142382175-142382195 0.00035 7_[+1]_5 chr22:36646542-36646562 0.00038 2_[+1]_10 chr5:130548430-130548450 0.00055 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGCRTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTGCRTGC width=8 seqs=32 chr12:57082029-57082049 ( 11) GTGCGTGC 1 chr16:48400556-48400576 ( 4) GTGCGTGC 1 chr7:135241456-135241476 ( 9) GTGCGTGC 1 chrX:106916366-106916386 ( 3) GTGCGTGC 1 chr2:178499818-178499838 ( 4) GTGCGTGC 1 chr2:122356583-122356603 ( 1) GTGCGTGC 1 chr3:95075929-95075949 ( 6) GTGCATGC 1 chr1:67680681-67680701 ( 7) GTGCATGC 1 chr20:52368065-52368085 ( 11) TTGCGTGC 1 chr1:1609644-1609664 ( 12) TTGCGTGC 1 chr4:39765839-39765859 ( 3) TTGCGTGC 1 chr1:160714406-160714426 ( 9) TTGCATGC 1 chr20:15966618-15966638 ( 4) CTGCATGC 1 chr20:53734217-53734237 ( 10) CTGCATGC 1 chr4:165857181-165857201 ( 11) CTGCATGC 1 chr3:72031907-72031927 ( 8) GTGCGTGA 1 chr1:171584846-171584866 ( 5) CTGCTTGC 1 chr19:6601810-6601830 ( 10) CTGCTTGC 1 chr4:116877463-116877483 ( 3) GTGCATGA 1 chr8:95453342-95453362 ( 8) CTGCTTGC 1 chr14:93631735-93631755 ( 11) CTGCTTGC 1 chr10:31673485-31673505 ( 3) TTGCGTGA 1 chr2:99087617-99087637 ( 3) GTGCGTGT 1 chr14:34407699-34407719 ( 4) CTGCGTGA 1 chr7:45018820-45018840 ( 7) TTGCACGC 1 chr3:59232646-59232666 ( 10) GTGTGTGC 1 chr7:128595079-128595099 ( 4) GTGCATGT 1 chr11:60796003-60796023 ( 10) TTGCACGC 1 chr17:1117031-1117051 ( 4) TTGCACGC 1 chr5:142382175-142382195 ( 8) TTGCACGC 1 chr22:36646542-36646562 ( 3) GTGTATGC 1 chr5:130548430-130548450 ( 3) GTACGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGCRTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.98246 E= 6.9e-015 -1164 -3 93 17 -1164 -1164 -1164 200 -299 -1164 198 -1164 -1164 187 -1164 -200 71 -1164 93 -100 -1164 -103 -1164 181 -1164 -1164 203 -1164 -99 167 -1164 -200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGCRTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 6.9e-015 0.000000 0.250000 0.468750 0.281250 0.000000 0.000000 0.000000 1.000000 0.031250 0.000000 0.968750 0.000000 0.000000 0.937500 0.000000 0.062500 0.406250 0.000000 0.468750 0.125000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.125000 0.812500 0.000000 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTGCRTGC MEME-1 regular expression -------------------------------------------------------------------------------- [GTC]TGC[GA]TGC -------------------------------------------------------------------------------- Time 1.90 secs. ******************************************************************************** ******************************************************************************** MOTIF TSMCAGGG MEME-2 width = 8 sites = 12 llr = 104 E-value = 2.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSMCAGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::6:8::: pos.-specific C :349:::: probability G :7:1:9aa matrix T a:::31:: bits 2.0 * ** 1.8 * ** 1.6 * * *** 1.4 * * *** Relative 1.2 * ***** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACAGGG consensus CC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSMCAGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:94222002-94222022 12 1.44e-05 aggcagtacg tgacaggg g chr10:30725303-30725323 4 1.44e-05 GCG TGACAGGG GCCCTGTGT chr20:53734217-53734237 1 1.44e-05 . tgacaggg gctgcatgca chr4:165857181-165857201 2 1.44e-05 g tgacaggg gctgcatgca chr21:43429206-43429226 10 2.93e-05 gaggctcgg tgccaggg ctg chrX:7028995-7029015 4 4.43e-05 agg tcacaggg gatatgatg chr2:136742624-136742644 6 7.43e-05 AATTT TCCCAGGG ATTGTGC chr5:133205001-133205021 9 8.93e-05 GGCTTTCC TGCCTGGG CTTG chr2:38304174-38304194 7 1.20e-04 GTCATA TCCCTGGG CGCTGC chr8:50164323-50164343 2 1.20e-04 G TCCCTGGG GCTGCACACA chr10:92765177-92765197 4 1.49e-04 gtc tgacatgg cagcaggca chr5:157346547-157346567 6 1.49e-04 gcgtg tgagaggg tcatgat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSMCAGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:94222002-94222022 1.4e-05 11_[+2]_1 chr10:30725303-30725323 1.4e-05 3_[+2]_9 chr20:53734217-53734237 1.4e-05 [+2]_12 chr4:165857181-165857201 1.4e-05 1_[+2]_11 chr21:43429206-43429226 2.9e-05 9_[+2]_3 chrX:7028995-7029015 4.4e-05 3_[+2]_9 chr2:136742624-136742644 7.4e-05 5_[+2]_7 chr5:133205001-133205021 8.9e-05 8_[+2]_4 chr2:38304174-38304194 0.00012 6_[+2]_6 chr8:50164323-50164343 0.00012 1_[+2]_11 chr10:92765177-92765197 0.00015 3_[+2]_9 chr5:157346547-157346567 0.00015 5_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSMCAGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSMCAGGG width=8 seqs=12 chr4:94222002-94222022 ( 12) TGACAGGG 1 chr10:30725303-30725323 ( 4) TGACAGGG 1 chr20:53734217-53734237 ( 1) TGACAGGG 1 chr4:165857181-165857201 ( 2) TGACAGGG 1 chr21:43429206-43429226 ( 10) TGCCAGGG 1 chrX:7028995-7029015 ( 4) TCACAGGG 1 chr2:136742624-136742644 ( 6) TCCCAGGG 1 chr5:133205001-133205021 ( 9) TGCCTGGG 1 chr2:38304174-38304194 ( 7) TCCCTGGG 1 chr8:50164323-50164343 ( 2) TCCCTGGG 1 chr10:92765177-92765197 ( 4) TGACATGG 1 chr5:157346547-157346567 ( 6) TGAGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSMCAGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 2.1e+001 -1023 -1023 -1023 200 -1023 38 144 -1023 123 70 -1023 -1023 -1023 184 -156 -1023 159 -1023 -1023 0 -1023 -1023 190 -158 -1023 -1023 202 -1023 -1023 -1023 202 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSMCAGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.1e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.583333 0.416667 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSMCAGGG MEME-2 regular expression -------------------------------------------------------------------------------- T[GC][AC]C[AT]GGG -------------------------------------------------------------------------------- Time 2.65 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGAGMAA MEME-3 width = 8 sites = 11 llr = 95 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGAGMAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::19159a pos.-specific C :::1:5:: probability G :39:9::: matrix T a7::::1: bits 2.0 * * 1.8 * * 1.6 * *** ** 1.4 * *** ** Relative 1.2 ***** ** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGAGCAA consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAGMAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:85931921-85931941 3 1.48e-05 at ttgagcaa gcaggcggta chr1:46797920-46797940 3 1.48e-05 at ttgagcaa gcaaggagta chr6:27020273-27020293 4 1.48e-05 gat ttgagcaa tcaggcagt chr1:28913598-28913618 2 1.48e-05 t ttgagcaa gcaaggggta chr1:46791395-46791415 7 4.36e-05 ttgatt tggagcaa gcaagg chr3:134918161-134918181 7 5.77e-05 CCTACT TGGAGAAA ATGCTT chr2:149877233-149877253 5 5.77e-05 TGCG TGGAGAAA TGAACCTG chr19:2087302-2087322 7 1.18e-04 ttggcg ttgcgcaa acacca chr2:221899074-221899094 6 1.76e-04 TTGCA TTGAGATA TGTCTCC chr6:154579437-154579457 10 1.76e-04 ttggtgtgg ttaagaaa ctt chr10:84038323-84038343 1 1.76e-04 . TTGAAAAA AGCTGAGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAGMAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:85931921-85931941 1.5e-05 2_[+3]_10 chr1:46797920-46797940 1.5e-05 2_[+3]_10 chr6:27020273-27020293 1.5e-05 3_[+3]_9 chr1:28913598-28913618 1.5e-05 1_[+3]_11 chr1:46791395-46791415 4.4e-05 6_[+3]_6 chr3:134918161-134918181 5.8e-05 6_[+3]_6 chr2:149877233-149877253 5.8e-05 4_[+3]_8 chr19:2087302-2087322 0.00012 6_[+3]_6 chr2:221899074-221899094 0.00018 5_[+3]_7 chr6:154579437-154579457 0.00018 9_[+3]_3 chr10:84038323-84038343 0.00018 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAGMAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGAGMAA width=8 seqs=11 chr10:85931921-85931941 ( 3) TTGAGCAA 1 chr1:46797920-46797940 ( 3) TTGAGCAA 1 chr6:27020273-27020293 ( 4) TTGAGCAA 1 chr1:28913598-28913618 ( 2) TTGAGCAA 1 chr1:46791395-46791415 ( 7) TGGAGCAA 1 chr3:134918161-134918181 ( 7) TGGAGAAA 1 chr2:149877233-149877253 ( 5) TGGAGAAA 1 chr19:2087302-2087322 ( 7) TTGCGCAA 1 chr2:221899074-221899094 ( 6) TTGAGATA 1 chr6:154579437-154579457 ( 10) TTAAGAAA 1 chr10:84038323-84038343 ( 1) TTGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAGMAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.55806 E= 2.1e+002 -1010 -1010 -1010 200 -1010 -1010 15 154 -145 -1010 189 -1010 187 -149 -1010 -1010 -145 -1010 189 -1010 87 109 -1010 -1010 187 -1010 -1010 -146 201 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAGMAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.1e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.090909 0.000000 0.909091 0.000000 0.909091 0.090909 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.454545 0.545455 0.000000 0.000000 0.909091 0.000000 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAGMAA MEME-3 regular expression -------------------------------------------------------------------------------- T[TG]GAG[CA]AA -------------------------------------------------------------------------------- Time 5.04 secs. ******************************************************************************** ******************************************************************************** MOTIF HCACAGCA MEME-4 width = 8 sites = 11 llr = 94 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif HCACAGCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3:8:8::8 pos.-specific C 4a2a::a: probability G :::::a:: matrix T 4:::2::2 bits 2.0 * * ** 1.8 * * ** 1.6 * * ** 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******* (12.3 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACAGCA consensus T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCACAGCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:11990036-11990056 3 3.19e-05 GT CCACAGCA CGTGCAGCAC chr10:103662281-10366230 12 3.19e-05 GTTGGAGGTC TCACAGCA G chrX:11758092-11758112 8 3.19e-05 tttgtaa tcacagca gttat chr6:52363648-52363668 13 4.75e-05 GTTGAAAACC ACACAGCA chr14:93527914-93527934 8 4.75e-05 GGTGATA ACACAGCA TTCAA chr17:36781318-36781338 9 1.12e-04 atctcagc tcactgca acct chr12:92566801-92566821 10 1.12e-04 catctcggc tcactgca acc chr9:37986878-37986898 11 1.12e-04 TATCGACAGA CCACAGCT GC chr8:130559237-130559257 10 1.45e-04 TTCCCCCAC CCCCAGCA CTC chr16:57625243-57625263 11 1.45e-04 TCCACAGTGG CCCCAGCA GC chr6:25945561-25945581 4 1.76e-04 aga acacagct tgtgggttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCACAGCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:11990036-11990056 3.2e-05 2_[+4]_10 chr10:103662281-10366230 3.2e-05 11_[+4]_1 chrX:11758092-11758112 3.2e-05 7_[+4]_5 chr6:52363648-52363668 4.7e-05 12_[+4] chr14:93527914-93527934 4.7e-05 7_[+4]_5 chr17:36781318-36781338 0.00011 8_[+4]_4 chr12:92566801-92566821 0.00011 9_[+4]_3 chr9:37986878-37986898 0.00011 10_[+4]_2 chr8:130559237-130559257 0.00014 9_[+4]_3 chr16:57625243-57625263 0.00014 10_[+4]_2 chr6:25945561-25945581 0.00018 3_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCACAGCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HCACAGCA width=8 seqs=11 chr1:11990036-11990056 ( 3) CCACAGCA 1 chr10:103662281-10366230 ( 12) TCACAGCA 1 chrX:11758092-11758112 ( 8) TCACAGCA 1 chr6:52363648-52363668 ( 13) ACACAGCA 1 chr14:93527914-93527934 ( 8) ACACAGCA 1 chr17:36781318-36781338 ( 9) TCACTGCA 1 chr12:92566801-92566821 ( 10) TCACTGCA 1 chr9:37986878-37986898 ( 11) CCACAGCT 1 chr8:130559237-130559257 ( 10) CCCCAGCA 1 chr16:57625243-57625263 ( 11) CCCCAGCA 1 chr6:25945561-25945581 ( 4) ACACAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCACAGCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.55806 E= 2.5e+003 14 51 -1010 54 -1010 196 -1010 -1010 172 -49 -1010 -1010 -1010 196 -1010 -1010 172 -1010 -1010 -46 -1010 -1010 202 -1010 -1010 196 -1010 -1010 172 -1010 -1010 -46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCACAGCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.5e+003 0.272727 0.363636 0.000000 0.363636 0.000000 1.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.000000 0.000000 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.000000 0.000000 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HCACAGCA MEME-4 regular expression -------------------------------------------------------------------------------- [CTA]CACAGCA -------------------------------------------------------------------------------- Time 7.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTTTCC MEME-5 width = 8 sites = 11 llr = 93 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTTTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :8:::::2 pos.-specific C a::::397 probability G ::8::::1 matrix T :22aa71: bits 2.0 * ** 1.8 * ** 1.6 * ** * 1.4 ***** * Relative 1.2 ******* Entropy 1.0 ******* (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGTTTCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTTTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:46555832-46555852 10 1.60e-05 CACACAGGC CAGTTTCC GGA chr6:33096259-33096279 13 1.60e-05 GACTGTTTCT CAGTTTCC chr1:115599080-115599100 6 3.24e-05 Gcttt cagttccc cacacaa chr11:120369972-12036999 6 4.79e-05 agcgt cagtttca gcatctg chr12:15724036-15724056 10 4.79e-05 GAAGCAGCA CAGTTTCA GGG chr1:183811816-183811836 8 8.02e-05 GATTGAG CTGTTTCC TGTTA chr6:39357002-39357022 10 8.02e-05 GAATAAAAC CATTTTCC ATA chr16:28199165-28199185 5 8.02e-05 TTTA CATTTTCC CCTTTAAG chr3:86439045-86439065 5 9.56e-05 cgtg cagtttcg ggggaaca chr4:153225631-153225651 7 1.60e-04 GTGATT CTGTTCCC AGGCAA chr9:881013-881033 5 2.40e-04 AAAG CAGTTCTC AACTTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTTTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:46555832-46555852 1.6e-05 9_[+5]_3 chr6:33096259-33096279 1.6e-05 12_[+5] chr1:115599080-115599100 3.2e-05 5_[+5]_7 chr11:120369972-12036999 4.8e-05 5_[+5]_7 chr12:15724036-15724056 4.8e-05 9_[+5]_3 chr1:183811816-183811836 8e-05 7_[+5]_5 chr6:39357002-39357022 8e-05 9_[+5]_3 chr16:28199165-28199185 8e-05 4_[+5]_8 chr3:86439045-86439065 9.6e-05 4_[+5]_8 chr4:153225631-153225651 0.00016 6_[+5]_6 chr9:881013-881033 0.00024 4_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTTTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTTTCC width=8 seqs=11 chr17:46555832-46555852 ( 10) CAGTTTCC 1 chr6:33096259-33096279 ( 13) CAGTTTCC 1 chr1:115599080-115599100 ( 6) CAGTTCCC 1 chr11:120369972-12036999 ( 6) CAGTTTCA 1 chr12:15724036-15724056 ( 10) CAGTTTCA 1 chr1:183811816-183811836 ( 8) CTGTTTCC 1 chr6:39357002-39357022 ( 10) CATTTTCC 1 chr16:28199165-28199185 ( 5) CATTTTCC 1 chr3:86439045-86439065 ( 5) CAGTTTCG 1 chr4:153225631-153225651 ( 7) CTGTTCCC 1 chr9:881013-881033 ( 5) CAGTTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTTTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.55806 E= 1.1e+004 -1010 196 -1010 -1010 172 -1010 -1010 -46 -1010 -1010 174 -46 -1010 -1010 -1010 200 -1010 -1010 -1010 200 -1010 9 -1010 154 -1010 183 -1010 -146 -45 151 -143 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTTTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+004 0.000000 1.000000 0.000000 0.000000 0.818182 0.000000 0.000000 0.181818 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.909091 0.000000 0.090909 0.181818 0.727273 0.090909 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTTTCC MEME-5 regular expression -------------------------------------------------------------------------------- CAGTT[TC]CC -------------------------------------------------------------------------------- Time 10.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:133205001-133205021 1.62e-02 8_[+2(8.93e-05)]_4 chr2:122356583-122356603 9.49e-03 [+1(1.50e-05)]_12 chr7:150077777-150077797 8.10e-01 20 chr4:165857181-165857201 2.39e-04 1_[+2(1.44e-05)]_1_[+1(9.21e-05)]_2 chr15:39785802-39785822 7.25e-01 20 chr15:97658912-97658932 6.17e-02 20 chr10:84038323-84038343 4.31e-03 20 chr21:21372261-21372281 8.08e-01 20 chr22:36646542-36646562 1.39e-01 20 chr14:93527914-93527934 1.74e-02 7_[+4(4.75e-05)]_5 chr16:57625243-57625263 1.37e-02 20 chr2:191022838-191022858 8.25e-01 20 chr8:38267411-38267431 6.63e-01 20 chr4:39765839-39765859 1.41e-02 2_[+1(4.54e-05)]_10 chr8:68737205-68737225 7.77e-01 20 chr14:93226123-93226143 2.52e-01 20 chr3:11684090-11684110 5.41e-01 20 chr17:48084885-48084905 5.15e-01 20 chr2:67691177-67691197 7.72e-01 20 chr15:75626082-75626102 6.56e-01 20 chr6:167371960-167371980 2.13e-01 20 chr4:155954214-155954234 3.09e-01 20 chr16:47351981-47352001 8.47e-01 20 chr6:157971373-157971393 6.38e-01 20 chr12:31960184-31960204 7.47e-02 20 chr1:28913598-28913618 4.90e-03 1_[+3(1.48e-05)]_11 chr14:93631735-93631755 2.16e-02 20 chr6:137955529-137955549 7.31e-01 20 chr8:95453342-95453362 1.13e-04 20 chr7:97252831-97252851 6.60e-01 20 chr13:24540947-24540967 1.36e-01 20 chr2:11890156-11890176 5.41e-01 20 chr15:86236348-86236368 5.35e-01 20 chr6:27020273-27020293 3.23e-02 3_[+3(1.48e-05)]_9 chr11:58870002-58870022 1.08e-01 20 chr15:65104319-65104339 9.33e-01 20 chr19:16560225-16560245 1.99e-01 20 chr2:149877233-149877253 2.70e-02 4_[+3(5.77e-05)]_8 chr15:37307403-37307423 1.02e-01 20 chr9:37986878-37986898 1.03e-01 20 chr5:157346547-157346567 6.11e-02 20 chr5:142382175-142382195 2.12e-02 20 chr10:50747296-50747316 5.35e-02 20 chr22:50317285-50317305 1.58e-01 20 chr8:50164323-50164343 1.52e-02 20 chr10:7499746-7499766 4.03e-01 20 chrX:11758092-11758112 1.66e-02 7_[+4(3.19e-05)]_5 chr20:53734217-53734237 2.33e-04 [+2(1.44e-05)]_1_[+1(9.21e-05)]_3 chr17:70611376-70611396 1.42e-01 20 chr4:150496298-150496318 9.56e-01 20 chr19:2087302-2087322 1.28e-02 20 chr17:38468773-38468793 1.81e-01 20 chr2:34902468-34902488 1.11e-01 20 chr15:91440544-91440564 2.09e-01 20 chr2:203534772-203534792 5.42e-01 20 chr4:71271728-71271748 2.98e-01 20 chr4:693354-693374 4.87e-01 20 chr10:100168809-10016882 4.43e-01 20 chr6:30726576-30726596 1.01e-01 20 chr15:59775340-59775360 1.97e-01 20 chr12:8123426-8123446 7.46e-02 20 chr1:67680681-67680701 8.59e-04 6_[+1(3.01e-05)]_6 chr14:97908962-97908982 3.49e-02 20 chr3:30691214-30691234 6.88e-01 20 chr22:43659877-43659897 8.65e-01 20 chr3:56807469-56807489 4.33e-01 20 chr3:178232067-178232087 5.79e-01 20 chr4:186317607-186317627 9.82e-01 20 chr2:46131446-46131466 9.82e-01 20 chr12:127634751-12763477 6.90e-02 20 chr12:92566801-92566821 3.44e-02 20 chr1:46791395-46791415 3.30e-03 6_[+3(4.36e-05)]_6 chr10:30725303-30725323 3.06e-02 3_[+2(1.44e-05)]_9 chr10:94870416-94870436 6.09e-02 20 chr2:178499818-178499838 2.93e-03 3_[+1(1.50e-05)]_9 chrX:106916366-106916386 1.08e-02 2_[+1(1.50e-05)]_10 chr1:65885510-65885530 5.09e-01 20 chr3:156361774-156361794 9.49e-01 20 chr17:70585285-70585305 3.83e-01 20 chr4:116877463-116877483 7.28e-02 20 chr4:136190746-136190766 6.22e-01 20 chr7:124996148-124996168 2.96e-01 20 chr12:15724036-15724056 6.54e-03 9_[+5(4.79e-05)]_3 chr1:46797920-46797940 1.34e-02 2_[+3(1.48e-05)]_10 chr14:97844077-97844097 2.74e-01 20 chr4:89744890-89744910 2.26e-01 20 chr10:103662281-10366230 6.97e-03 11_[+4(3.19e-05)]_1 chrX:11808077-11808097 1.39e-01 20 chr1:70819470-70819490 2.44e-01 20 chr19:6601810-6601830 2.01e-02 20 chr2:137003986-137004006 5.15e-01 20 chr17:76684243-76684263 6.35e-01 20 chr14:73102220-73102240 7.17e-01 20 chr2:14446594-14446614 5.35e-01 20 chr17:1117031-1117051 9.87e-02 20 chrX:1702143-1702163 7.89e-01 20 chr18:47839242-47839262 9.92e-01 20 chr12:9950774-9950794 7.24e-02 20 chr4:48213949-48213969 8.78e-01 20 chr1:223724623-223724643 8.15e-01 20 chr5:177751500-177751520 4.81e-01 20 chr7:135241456-135241476 2.28e-03 8_[+1(1.50e-05)]_4 chr11:36016187-36016207 2.56e-01 20 chrX:1654227-1654247 7.24e-01 20 chr1:11990036-11990056 6.40e-03 2_[+4(3.19e-05)]_10 chr1:113479879-113479899 4.56e-01 20 chr20:49067669-49067689 2.36e-01 20 chr11:117685658-11768567 4.87e-01 20 chr17:76149757-76149777 3.68e-01 20 chrX:24531775-24531795 3.35e-01 20 chr15:66446483-66446503 2.21e-02 20 chr4:153225631-153225651 3.66e-03 20 chr16:11501552-11501572 2.87e-01 20 chr17:72631750-72631770 7.39e-01 20 chr6:131385087-131385107 1.70e-01 20 chr18:52732200-52732220 2.11e-01 20 chr19:34850255-34850275 9.21e-02 20 chr10:82349788-82349808 8.57e-03 20 chr2:65615457-65615477 2.89e-01 20 chr1:160714406-160714426 3.15e-02 8_[+1(7.63e-05)]_4 chr16:28199165-28199185 3.45e-02 4_[+5(8.02e-05)]_8 chr6:25945561-25945581 5.85e-02 20 chr11:60796003-60796023 4.13e-02 20 chr6:33096259-33096279 3.34e-03 12_[+5(1.60e-05)] chr6:144472467-144472487 3.00e-01 20 chrX:10079574-10079594 4.07e-01 20 chr7:134856277-134856297 7.45e-01 20 chr14:34407699-34407719 4.41e-02 20 chr6:154579437-154579457 1.64e-01 20 chr3:134918161-134918181 1.59e-02 6_[+3(5.77e-05)]_6 chr1:198904810-198904830 5.31e-01 20 chr1:27951946-27951966 1.59e-01 20 chr4:94222002-94222022 1.44e-03 11_[+2(1.44e-05)]_1 chr4:75579616-75579636 2.81e-01 20 chrX:9949657-9949677 1.04e-01 20 chrX:38741156-38741176 5.78e-01 20 chr12:6556063-6556083 1.42e-01 20 chr3:95075929-95075949 7.02e-03 5_[+1(3.01e-05)]_7 chr3:72031907-72031927 6.68e-02 20 chr5:75878250-75878270 5.78e-01 20 chrX:9915628-9915648 2.08e-01 20 chr5:159886401-159886421 4.62e-01 20 chr7:114195065-114195085 6.05e-01 20 chr3:16472851-16472871 5.04e-01 20 chr8:100845416-100845436 3.92e-01 20 chr10:104474112-10447413 3.30e-01 20 chr5:142793902-142793922 2.53e-01 20 chr14:24838114-24838134 9.32e-01 20 chr2:136742624-136742644 4.17e-03 5_[+2(7.43e-05)]_7 chr2:99087617-99087637 1.89e-01 20 chr6:51325043-51325063 9.64e-01 20 chr3:81810217-81810237 4.82e-01 20 chr15:39746112-39746132 6.59e-02 20 chr2:38323553-38323573 6.33e-01 20 chr8:130559237-130559257 8.09e-02 20 chr14:96043616-96043636 7.97e-01 20 chr2:25633507-25633527 1.22e-01 20 chr5:130548430-130548450 4.54e-02 20 chr7:28549485-28549505 2.13e-01 20 chr17:7854939-7854959 8.84e-02 20 chr17:36781318-36781338 1.72e-02 20 chr20:15966618-15966638 4.73e-02 3_[+1(9.21e-05)]_9 chr10:14630220-14630240 3.00e-01 20 chr1:67740483-67740503 7.82e-01 20 chr11:120369972-12036999 5.16e-03 5_[+5(4.79e-05)]_7 chr2:232046726-232046746 3.73e-01 20 chr1:171584846-171584866 2.00e-03 20 chr1:115599080-115599100 1.23e-02 5_[+5(3.24e-05)]_7 chr4:159739336-159739356 4.24e-01 20 chr7:1102077-1102097 3.89e-01 20 chrX:35461290-35461310 1.00e-01 20 chr19:4968578-4968598 7.16e-01 20 chr6:52363648-52363668 1.19e-02 12_[+4(4.75e-05)] chr17:46555832-46555852 5.37e-03 9_[+5(1.60e-05)]_3 chrX:7028995-7029015 9.31e-03 3_[+2(4.43e-05)]_9 chr6:39357002-39357022 7.93e-02 9_[+5(8.02e-05)]_3 chr6:150657702-150657722 4.83e-02 20 chr6:44041171-44041191 6.86e-01 20 chr18:67553492-67553512 9.09e-01 20 chr12:106695685-10669570 9.19e-01 20 chr16:48400556-48400576 8.91e-03 3_[+1(1.50e-05)]_9 chr11:61137324-61137344 2.77e-02 20 chr18:23761684-23761704 3.17e-01 20 chr3:122492900-122492920 4.34e-01 20 chr1:6474658-6474678 4.41e-01 20 chr11:79117598-79117618 4.04e-01 20 chr3:88191384-88191404 9.84e-01 20 chr6:33524811-33524831 7.49e-01 20 chr1:154836329-154836349 8.64e-02 20 chr18:4101197-4101217 6.70e-01 20 chr10:92765177-92765197 2.82e-02 20 chr17:78239509-78239529 7.16e-01 20 chrX:84636796-84636816 3.54e-01 20 chr12:131576005-13157602 3.39e-01 20 chr16:48630325-48630345 4.27e-01 20 chr21:43429206-43429226 7.62e-03 9_[+2(2.93e-05)]_3 chr14:76618949-76618969 3.60e-01 20 chr17:1496322-1496342 6.93e-01 20 chr10:121357543-12135756 2.65e-01 20 chr12:57082029-57082049 9.65e-03 10_[+1(1.50e-05)]_2 chr7:128595079-128595099 5.45e-02 20 chr6:3027402-3027422 4.37e-01 20 chr21:45342218-45342238 2.54e-01 20 chr1:40840274-40840294 3.71e-01 20 chr8:11280338-11280358 4.79e-01 20 chr2:88906119-88906139 9.34e-02 20 chrX:106920407-106920427 3.59e-01 20 chr20:47405403-47405423 9.09e-02 20 chr1:226548321-226548341 1.46e-01 20 chr5:159861182-159861202 6.97e-02 20 chr20:52523847-52523867 1.85e-01 20 chr3:59232646-59232666 5.05e-02 20 chr18:29073276-29073296 3.26e-02 20 chr1:183811816-183811836 2.65e-03 7_[+5(8.02e-05)]_5 chr3:117198143-117198163 2.78e-01 20 chr2:217471641-217471661 3.72e-02 20 chr10:11288745-11288765 6.79e-01 20 chr9:21357854-21357874 2.84e-01 20 chr1:88616244-88616264 3.73e-01 20 chr10:85931921-85931941 1.56e-02 2_[+3(1.48e-05)]_10 chr1:68215855-68215875 1.19e-01 20 chr9:881013-881033 4.59e-02 20 chr12:125423230-12542325 4.74e-01 20 chr14:102291368-10229138 3.68e-01 20 chr6:15387485-15387505 8.41e-01 20 chr17:27055360-27055380 9.65e-01 20 chr3:86439045-86439065 5.22e-02 4_[+5(9.56e-05)]_8 chr2:74259537-74259557 2.48e-02 20 chr1:1609644-1609664 3.33e-03 11_[+1(4.54e-05)]_1 chr17:76768002-76768022 2.88e-02 20 chr2:38304174-38304194 2.21e-03 20 chr8:142142068-142142088 3.81e-01 20 chr10:102772779-10277279 8.38e-01 20 chr17:55432909-55432929 6.09e-01 20 chr7:120400304-120400324 2.31e-01 20 chr14:51203831-51203851 9.38e-01 20 chr6:2866740-2866760 3.63e-01 20 chr1:223363879-223363899 8.25e-01 20 chr11:115944822-11594484 3.92e-01 20 chr7:45018820-45018840 3.22e-03 20 chr2:69809553-69809573 3.73e-01 20 chr7:126336934-126336954 7.93e-01 20 chr6:6943314-6943334 2.71e-01 20 chr20:52368065-52368085 2.79e-03 10_[+1(4.54e-05)]_2 chr2:221899074-221899094 4.20e-02 20 chr8:70556446-70556466 3.97e-01 20 chr10:30786776-30786796 3.50e-01 20 chr10:31673485-31673505 4.60e-03 20 chr17:55416126-55416146 4.40e-01 20 chr1:76192666-76192686 7.67e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************