# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ZNF622/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZNF622.fasta
#   positives: 114 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZNF622.fasta (Sat Feb 12 17:37:49 EST 2022)
#   negatives: 114 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.227 C 0.280 G 0.273 T 0.219


MOTIF AGCCAATG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCAATG   CATTGGCT          5          0   3.0e-002   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCCGCCCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGCCCC   GGGGCGGG          4          0   6.1e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 8.2e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGCCTCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCCTCC   GGAGGCGG          4          0   6.1e-002   8.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 8.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CATTGGCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATTGGCC   GGCCAATG          3          0   1.2e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGCCCAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCCCAC   GTGGGCGG          3          0   1.2e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.39 seconds