# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ZNF592/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZNF592.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZNF592.fasta (Sat Feb 12 17:37:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.291 C 0.206 G 0.226 T 0.277


MOTIF AARATGGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AARATGGA   TCCATYTT         44          0   7.1e-015   1.7e-011
#         AAAATGGA   TCCATTTT         22          0   1.5e-007   3.5e-004
#         AAGATGGA   TCCATCTT         22          0   1.5e-007   3.5e-004

letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.7e-011
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.500000 0.000000 0.500000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAACCAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAACCAGA   TCTGGTTC         14          0   5.1e-005   1.1e-001
#         GAACCAGA   TCTGGTTC         14          0   5.1e-005   1.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.1e-001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTCTGACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGACA   TGTCAGAG         10          1   5.4e-003   1.2e+001
#         CTCTGACA   TGTCAGAG         10          1   5.4e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.2e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGAGTCAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAGTCAC   GTGACTCC          7          0   7.5e-003   1.6e+001
#         GGAGTCAC   GTGACTCC          7          0   7.5e-003   1.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.6e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GACCTAAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACCTAAC   GTTAGGTC          6          0   1.5e-002   3.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.2e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.68 seconds