# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ZNF24/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZNF24.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZNF24.fasta (Sat Feb 12 17:37:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.318 C 0.181 G 0.201 T 0.299


MOTIF AYTCATTC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AYTCATTC   GAATGART         68          6   1.2e-016   2.9e-013
#         ATTCATTC   GAATGAAT         56          5   1.5e-013   3.5e-010
#         ACTCATTC   GAATGAGT         17          1   5.6e-005   1.3e-001

letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 2.9e-013
1.000000 0.000000 0.000000 0.000000
0.000000 0.168675 0.000000 0.831325
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATGAATG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATGAATG   CATTCATT         14          3   5.7e-003   1.2e+001
#         AATGAATG   CATTCATT         14          3   5.7e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATTTATTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTATTC   GAATAAAT          5          0   3.1e-002   6.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTCACTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTCACTC   GAGTGAAT         10          4   8.7e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGCAGCT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCAGCT   AGCTGCTT          3          0   1.2e-001   2.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.61 seconds