# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ZFP36/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZFP36.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZFP36.fasta (Sat Feb 12 17:37:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.211 C 0.295 G 0.276 T 0.218


MOTIF GAGGAGGY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGGAGGY   RCCTCCTC         51          1   7.6e-016   1.5e-012
#         GAGGAGGT   ACCTCCTC         39          0   3.6e-013   7.3e-010
#         GAGGAGGC   GCCTCCTC         12          1   1.5e-003   3.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.5e-012
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.235294 0.000000 0.764706


MOTIF TCCAGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCAGGAA   TTCCTGGA         31          0   1.7e-010   3.2e-007
#         TCCAGGAA   TTCCTGGA         31          0   1.7e-010   3.2e-007

letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.2e-007
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGGCTTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGCTTC   GAAGCCTT          9          0   1.8e-003   3.3e+000
#         AAGGCTTC   GAAGCCTT          9          0   1.8e-003   3.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.3e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTTCCTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCCTG   CAGGAAGT          5          0   3.1e-002   5.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGAGGTGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGTGG   CCACCTCT          5          0   3.1e-002   5.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.65 seconds