# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ZBTB40/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZBTB40.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZBTB40.fasta (Sat Feb 12 17:37:43 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.292 C 0.192 G 0.209 T 0.306


MOTIF TTTATTGR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTTATTGR   YCAATAAA         45          0   3.2e-015   7.2e-012
#         TTTATTGG   CCAATAAA         31          0   1.7e-010   3.9e-007
#         TTTATTGA   TCAATAAA         14          0   5.1e-005   1.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 7.2e-012
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.311111 0.000000 0.688889 0.000000


MOTIF AATAAAGT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAAAGT   ACTTTATT         36          0   3.7e-012   8.1e-009
#         AATAAAGT   ACTTTATT         36          0   3.7e-012   8.1e-009

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 8.1e-009
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAAACAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAACAG   CTGTTTTT         11          0   4.4e-004   9.2e-001
#         AAAAACAG   CTGTTTTT         11          0   4.4e-004   9.2e-001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 9.2e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GTAAATAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTAAATAA   TTATTTAC          6          0   1.5e-002   3.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.1e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACAGCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACAGCC   GGCTGTGT          5          0   3.1e-002   6.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.65 seconds