# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ZBTB33/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZBTB33.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ZBTB33.fasta (Sat Feb 12 17:37:43 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.202 C 0.300 G 0.303 T 0.195


MOTIF TCRCGAGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCRCGAGA   TCTCGYGA         36          2   8.0e-010   2.1e-006
#         TCGCGAGA   TCTCGCGA         25          2   1.6e-006   4.3e-003
#         TCACGAGA   TCTCGTGA         11          0   4.4e-004   1.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.1e-006
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.305556 0.000000 0.694444 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGATCTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGATCTC   GAGATCTG          7          0   7.5e-003   1.8e+001
#         CAGATCTC   GAGATCTG          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCACTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCACTCA   TGAGTGAG          6          0   1.5e-002   3.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTCGCGAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCGCGAG   CTCGCGAG          5          0   3.1e-002   7.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.3e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCGCGAGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCGAGA   TCTCGCGG          7          1   3.4e-002   8.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.64 seconds