# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_YY1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/YY1.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/YY1.fasta (Sat Feb 12 17:37:42 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.179 C 0.312 G 0.332 T 0.177


MOTIF AAVATGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAVATGGC   GCCATBTT         46          4   3.3e-011   8.3e-008
#         AAGATGGC   GCCATCTT         19          1   1.5e-005   3.7e-002
#         AACATGGC   GCCATGTT         10          0   8.9e-004   2.3e+000
#         AAAATGGC   GCCATTTT         17          3   1.1e-003   2.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 8.3e-008
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.369565 0.217391 0.413043 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCGCCGCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCCGCC   GGCGGCGC         10          0   8.9e-004   2.1e+000
#         GCGCCGCC   GGCGGCGC         10          0   8.9e-004   2.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.1e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGCCGCCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCCGCCA   TGGCGGCC          8          0   3.7e-003   8.6e+000
#         GGCCGCCA   TGGCGGCC          8          0   3.7e-003   8.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.6e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGGCGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGCGGA   TCCGCCAT          5          0   3.1e-002   7.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCGCGGCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCGGCG   CGCCGCGG          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds