# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_TCF7/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/TCF7.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/TCF7.fasta (Sat Feb 12 17:37:38 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.294 C 0.210 G 0.207 T 0.289


MOTIF CCACATSA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCACATSA   TSATGTGG         35          0   8.1e-012   2.1e-008
#         CCACATCA   TGATGTGG         28          0   1.7e-009   4.4e-006
#         CCACATGA   TCATGTGG          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.1e-008
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.805556 0.194444 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTTTGATC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTTGATC   GATCAAAG         15          0   2.5e-005   6.0e-002
#         CTTTGATC   GATCAAAG         15          0   2.5e-005   6.0e-002

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 6.0e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACWTCAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACWTCAAA   TTTGAWGT         17          1   5.6e-005   1.3e-001
#         ACTTCAAA   TTTGAAGT         10          1   5.4e-003   1.3e+001
#         ACATCAAA   TTTGATGT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.3e-001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.411765 0.000000 0.000000 0.588235
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGAAAGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGAAAGG   CCTTTCAT          5          0   3.1e-002   7.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCACAACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCACAACA   TGTTGTGG          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.64 seconds