# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_TBX21/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/TBX21.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/TBX21.fasta (Sat Feb 12 17:37:36 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.302 C 0.212 G 0.204 T 0.282


MOTIF GTGTGAAM DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGTGAAM   KTTCACAC         20          1   7.3e-006   1.9e-002
#         GTGTGAAA   TTTCACAC         12          1   1.5e-003   4.0e+000
#         GTGTGAAC   GTTCACAC          8          0   3.7e-003   9.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.9e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.600000 0.400000 0.000000 0.000000


MOTIF AGGTGTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTGTGA   TCACACCT          9          0   1.8e-003   4.6e+000
#         AGGTGTGA   TCACACCT          9          0   1.8e-003   4.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.6e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGTGTTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTGTTA   TAACACCT          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGTGAGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTGAGA   TCTCACCT          5          0   3.1e-002   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACCTCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACCTCCC   GGGAGGTG          5          0   3.1e-002   7.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.4e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds