# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_RCOR1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/RCOR1.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/RCOR1.fasta (Sat Feb 12 17:37:17 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:50 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.217 C 0.286 G 0.292 T 0.206


MOTIF TCGCGAGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCGCGAGA   TCTCGCGA         10          0   8.9e-004   2.6e+000
#         TCGCGAGA   TCTCGCGA         10          0   8.9e-004   2.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.6e+000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTGCTGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGCTGAA   TTCAGCAC          9          0   1.8e-003   5.1e+000
#         GTGCTGAA   TTCAGCAC          9          0   1.8e-003   5.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.1e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCTGTCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCTGTCC   GGACAGCG          7          0   7.5e-003   2.1e+001
#         CGCTGTCC   GGACAGCG          7          0   7.5e-003   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCGCGAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGCGAG   CTCGCGGG          5          0   3.1e-002   8.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CACTTCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACTTCCC   GGGAAGTG          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds