# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_RAD21/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/RAD21.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/RAD21.fasta (Sat Feb 12 17:37:14 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.234 C 0.279 G 0.286 T 0.201


MOTIF AGRTGGCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGRTGGCA   TGCCAYCT         27          1   5.4e-008   1.3e-004
#         AGATGGCA   TGCCATCT         13          0   1.0e-004   2.6e-001
#         AGGTGGCA   TGCCACCT         14          1   4.2e-004   1.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.3e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.481481 0.000000 0.518519 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGGGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGGCA   TGCCCTCT         17          2   2.9e-004   6.9e-001
#         AGAGGGCA   TGCCCTCT         17          2   2.9e-004   6.9e-001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 6.9e-001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGATGTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATGTCA   TGACATCT          7          0   7.5e-003   1.7e+001
#         AGATGTCA   TGACATCT          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCACCAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCACCAC   GTGGTGCT          7          0   7.5e-003   1.7e+001
#         AGCACCAC   GTGGTGCT          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCCCTAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCCCTAG   CTAGGGGG          7          0   7.5e-003   1.7e+001
#         CCCCCTAG   CTAGGGGG          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.64 seconds