# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_NFATC1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/NFATC1.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/NFATC1.fasta (Sat Feb 12 17:37:00 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.276 C 0.215 G 0.223 T 0.287


MOTIF AATGGAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATGGAAA   TTTCCATT         10          0   8.9e-004   2.2e+000
#         AATGGAAA   TTTCCATT         10          0   8.9e-004   2.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.2e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGCACACA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGCACACA   TGTGTGCA         17          5   7.3e-003   1.8e+001
#         TGCACACA   TGTGTGCA         17          5   7.3e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.8e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGAGTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGAGTCA   TGACTCAT          7          0   7.5e-003   1.8e+001
#         ATGAGTCA   TGACTCAT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTGGAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGGAAA   TTTCCACT          6          0   1.5e-002   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCATGGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCATGGAA   TTCCATGA          6          0   1.5e-002   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.5e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds