# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_NBN/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/NBN.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/NBN.fasta (Sat Feb 12 17:36:59 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.207 C 0.282 G 0.300 T 0.211


MOTIF GACGTCAY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACGTCAY   RTGACGTC         22          1   1.8e-006   4.8e-003
#         GACGTCAC   GTGACGTC         20          1   7.3e-006   1.9e-002
#         GACGTCAT   ATGACGTC          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.8e-003
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.727273 0.000000 0.272727


MOTIF AAGAAAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAAAGA   TCTTTCTT          5          0   3.1e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTGTGTGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGTGTGA   TCACACAC          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGCACAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGCACAC   GTGTGCGT          5          1   1.1e-001   2.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCCGCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCCGCCC   GGGCGGGG          5          1   1.1e-001   2.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds