# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_MLLT1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/MLLT1.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/MLLT1.fasta (Sat Feb 12 17:36:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.240 C 0.259 G 0.259 T 0.242


MOTIF AATCCCAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATCCCAG   CTGGGATT         10          0   8.9e-004   2.2e+000
#         AATCCCAG   CTGGGATT         10          0   8.9e-004   2.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.2e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGGAGAAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAGAAT   ATTCTCCT          8          0   3.7e-003   9.0e+000
#         AGGAGAAT   ATTCTCCT          8          0   3.7e-003   9.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.0e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AGGCTGAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCTGAG   CTCAGCCT          8          0   3.7e-003   9.0e+000
#         AGGCTGAG   CTCAGCCT          8          0   3.7e-003   9.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.0e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCCGAGTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGAGTA   TACTCGGG          8          0   3.7e-003   8.9e+000
#         CCCGAGTA   TACTCGGG          8          0   3.7e-003   8.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.9e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGCCTGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCCTGG   CCAGGCTG          7          0   7.5e-003   1.8e+001
#         CAGCCTGG   CCAGGCTG          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.66 seconds