# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_MAX/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/MAX.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/MAX.fasta (Sat Feb 12 17:36:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.166 C 0.348 G 0.333 T 0.153


MOTIF CACGTGGB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGTGGB   VCCACGTG         34          0   1.7e-011   4.6e-008
#         CACGTGGT   ACCACGTG         14          0   5.1e-005   1.3e-001
#         CACGTGGC   GCCACGTG         12          0   2.1e-004   5.6e-001
#         CACGTGGG   CCCACGTG         11          0   4.4e-004   1.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 4.6e-008
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.352941 0.235294 0.411765


MOTIF TCACGTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCACGTGA   TCACGTGA          6          0   1.5e-002   3.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.7e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACGCGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGCGGC   GCCGCGTG          5          0   3.1e-002   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGCACGTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCACGTG   CACGTGCT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCCTCCCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCTCCCG   CGGGAGGG          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.64 seconds