# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_MAFK/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/MAFK.fasta # positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/MAFK.fasta (Sat Feb 12 17:36:46 EST 2022) # negatives: 250 from shuffled positives # host: c22n11.farnam.hpc.yale.internal # when: Sat Feb 12 18:29:50 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.306 C 0.207 G 0.200 T 0.287 MOTIF HTGCTGAS DREME-1 # Word RC Word Pos Neg P-value E-value # BEST HTGCTGAS STCAGCAD 119 2 3.5e-041 6.5e-038 # TTGCTGAC GTCAGCAA 37 1 3.6e-011 6.7e-008 # ATGCTGAC GTCAGCAT 28 1 2.6e-008 4.9e-005 # TTGCTGAG CTCAGCAA 20 0 6.4e-007 1.2e-003 # CTGCTGAC GTCAGCAG 17 0 5.8e-006 1.1e-002 # CTGCTGAG CTCAGCAG 13 0 1.0e-004 1.9e-001 # ATGCTGAG CTCAGCAT 12 0 2.1e-004 3.9e-001 letter-probability matrix: alength= 4 w= 8 nsites= 119 E= 6.5e-038 0.310924 0.226891 0.000000 0.462185 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.655462 0.344538 0.000000 MOTIF CTGAVTCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CTGAVTCA TGABTCAG 32 0 8.1e-011 1.1e-007 # CTGACTCA TGAGTCAG 19 0 1.3e-006 1.9e-003 # CTGAGTCA TGACTCAG 13 0 1.0e-004 1.5e-001 # CTGAATCA TGATTCAG 10 0 8.9e-004 1.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.1e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.312500 0.406250 0.281250 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAGTGCTG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAGTGCTG CAGCACTT 11 0 4.4e-004 5.7e-001 # AAGTGCTG CAGCACTT 11 0 4.4e-004 5.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 5.7e-001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GAGTCATC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GAGTCATC GATGACTC 7 0 7.5e-003 9.4e+000 # GAGTCATC GATGACTC 7 0 7.5e-003 9.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.4e+000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACTAAGCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ACTAAGCA TGCTTAGT 5 0 3.1e-002 3.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.8e+001 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: target motif count reached # Running time: 0.62 seconds