# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_LARP7/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/LARP7.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/LARP7.fasta (Sat Feb 12 17:36:44 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.116 C 0.386 G 0.389 T 0.109


MOTIF GCGGCAGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGGCAGC   GCTGCCGC          9          0   1.8e-003   4.2e+000
#         GCGGCAGC   GCTGCCGC          9          0   1.8e-003   4.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.2e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGCCGCCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCCGCCG   CGGCGGCG          7          0   7.5e-003   1.7e+001
#         CGCCGCCG   CGGCGGCG          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAGCGCGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCGCGG   CCGCGCTG          8          1   1.9e-002   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.2e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCCGGGAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGGGAG   CTCCCGGG          5          0   3.1e-002   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGGCCCCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGCCCCG   CGGGGCCG          5          0   3.1e-002   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.61 seconds