# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_HSF1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/HSF1.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/HSF1.fasta (Sat Feb 12 17:36:32 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:50 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.269 C 0.231 G 0.233 T 0.267


MOTIF BTTCYAGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    BTTCYAGA   TCTRGAAV         56          2   2.3e-016   5.8e-013
#         CTTCTAGA   TCTAGAAG         12          0   2.1e-004   5.3e-001
#         CTTCCAGA   TCTGGAAG         13          1   8.0e-004   2.0e+000
#         GTTCCAGA   TCTGGAAC         10          0   8.9e-004   2.2e+000
#         TTTCTAGA   TCTAGAAA         12          1   1.5e-003   3.8e+000
#         GTTCTAGA   TCTAGAAC          9          0   1.8e-003   4.5e+000
#         TTTCCAGA   TCTGGAAA          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 5.8e-013
0.000000 0.392857 0.267857 0.339286
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.535714 0.000000 0.464286
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAACATTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAACATTC   GAATGTTC         11          1   2.9e-003   6.5e+000
#         GAACATTC   GAATGTTC         11          1   2.9e-003   6.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.5e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TTCCAGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTCCAGAA   TTCTGGAA          8          0   3.7e-003   8.2e+000
#         TTCCAGAA   TTCTGGAA          8          0   3.7e-003   8.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.2e+000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTCGAGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTCGAGAA   TTCTCGAA          5          0   3.1e-002   6.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.7e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACATTCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATTCCA   TGGAATGT          4          0   6.2e-002   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds