# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_GABPA/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/GABPA.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/GABPA.fasta (Sat Feb 12 17:36:25 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.198 C 0.305 G 0.294 T 0.204


MOTIF CTTCCGGB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCGGB   VCCGGAAG         34          2   3.3e-009   8.6e-006
#         CTTCCGGT   ACCGGAAG         11          0   4.4e-004   1.1e+000
#         CTTCCGGC   GCCGGAAG          9          0   1.8e-003   4.7e+000
#         CTTCCGGG   CCCGGAAG         14          2   1.8e-003   4.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 8.6e-006
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.264706 0.411765 0.323529


MOTIF ACTTCCTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCCTG   CAGGAAGT         12          0   2.1e-004   5.1e-001
#         ACTTCCTG   CAGGAAGT         12          0   2.1e-004   5.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.1e-001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACTTCCGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCCGC   GCGGAAGT          9          0   1.8e-003   4.3e+000
#         ACTTCCGC   GCGGAAGT          9          0   1.8e-003   4.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.3e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGCCGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCCGGAA   TTCCGGCC          6          0   1.5e-002   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.5e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGGCGGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGCGGAA   TTCCGCCC          6          0   1.5e-002   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.4e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.68 seconds