# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_FOS/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/FOS.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/FOS.fasta (Sat Feb 12 17:36:22 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.199 C 0.300 G 0.309 T 0.192


MOTIF ATTGGCTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGGCTG   CAGCCAAT         10          0   8.9e-004   2.5e+000
#         ATTGGCTG   CAGCCAAT         10          0   8.9e-004   2.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.5e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CATTGGCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATTGGCC   GGCCAATG         10          0   8.9e-004   2.4e+000
#         CATTGGCC   GGCCAATG         10          0   8.9e-004   2.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.4e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCAATCAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATCAG   CTGATTGG          9          0   1.8e-003   4.8e+000
#         CCAATCAG   CTGATTGG          9          0   1.8e-003   4.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.8e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GACCAATC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACCAATC   GATTGGTC          5          0   3.1e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.9e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACCAATAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAATAG   CTATTGGT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.65 seconds