# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ELK1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ELK1.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ELK1.fasta (Sat Feb 12 17:36:11 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.195 C 0.303 G 0.298 T 0.204


MOTIF CCGGAAGY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGAAGY   RCTTCCGG         41          0   7.6e-014   2.0e-010
#         CCGGAAGT   ACTTCCGG         30          0   3.7e-010   9.7e-007
#         CCGGAAGC   GCTTCCGG         12          0   2.1e-004   5.6e-001

letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 2.0e-010
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.268293 0.000000 0.731707


MOTIF ATATGGTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATGGTC   GACCATAT          7          0   7.5e-003   1.8e+001
#         ATATGGTC   GACCATAT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACTTCCG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACTTCCG   CGGAAGTG          7          0   7.5e-003   1.8e+001
#         CACTTCCG   CGGAAGTG          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATATGGGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATGGGC   GCCCATAT          5          0   3.1e-002   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCCTCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCCTCCC   GGGAGGGG          5          0   3.1e-002   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.2e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds