# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_ELF1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ELF1.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/ELF1.fasta (Sat Feb 12 17:36:09 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:50 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.165 C 0.336 G 0.327 T 0.171


MOTIF CCGGAAGY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGAAGY   RCTTCCGG         33          2   6.7e-009   1.7e-005
#         CCGGAAGT   ACTTCCGG         15          0   2.5e-005   6.3e-002
#         CCGGAAGC   GCTTCCGG         18          2   1.6e-004   4.0e-001

letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.7e-005
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.545455 0.000000 0.454545


MOTIF CTTCCGCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCGCC   GGCGGAAG          9          0   1.8e-003   4.4e+000
#         CTTCCGCC   GGCGGAAG          9          0   1.8e-003   4.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.4e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTTCCTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCCTG   CAGGAAGT          6          0   1.5e-002   3.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACCCGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCCGGAA   TTCCGGGT          5          0   3.1e-002   7.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCGCTTCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCTTCC   GGAAGCGG          5          0   3.1e-002   7.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds