# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_CEBPB/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/CEBPB.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/CEBPB.fasta (Sat Feb 12 17:35:39 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.275 C 0.236 G 0.226 T 0.262


MOTIF RTTGYGCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTTGYGCA   TGCRCAAY         53          0   5.1e-018   1.3e-014
#         ATTGCGCA   TGCGCAAT         31          0   1.7e-010   4.5e-007
#         GTTGCGCA   TGCGCAAC         21          0   3.1e-007   8.0e-004
#         GTTGTGCA   TGCACAAC          9          0   1.8e-003   4.7e+000
#         ATTGTGCA   TGCACAAT          8          0   3.7e-003   9.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 1.3e-014
0.622642 0.000000 0.377358 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.679245 0.000000 0.320755
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGATGCAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGATGCAA   TTGCATCA         17          2   2.9e-004   6.9e-001
#         TGATGCAA   TTGCATCA         17          2   2.9e-004   6.9e-001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 6.9e-001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTACGCAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTACGCAA   TTGCGTAA          9          0   1.8e-003   4.1e+000
#         TTACGCAA   TTGCGTAA          9          0   1.8e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.1e+000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTGCGAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTGCGAAA   TTTCGCAA          5          0   3.1e-002   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGCAATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCAATA   TATTGCAT          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds