# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_CBX5/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/CBX5.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/CBX5.fasta (Sat Feb 12 17:35:36 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:29:50 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.281 C 0.220 G 0.208 T 0.290


MOTIF AGAAGTCW DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAAGTCW   WGACTTCT         20          0   6.4e-007   1.4e-003
#         AGAAGTCT   AGACTTCT         12          0   2.1e-004   4.7e-001
#         AGAAGTCA   TGACTTCT          8          0   3.7e-003   8.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.4e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.400000 0.000000 0.000000 0.600000


MOTIF ACAGCWGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGCWGA   TCWGCTGT         16          0   1.2e-005   2.6e-002
#         ACAGCAGA   TCTGCTGT          8          0   3.7e-003   8.0e+000
#         ACAGCTGA   TCAGCTGT          8          0   3.7e-003   8.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.6e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.500000 0.000000 0.000000 0.500000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGCAGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGCAGAA   TTCTGCAG         16          0   1.2e-005   2.5e-002
#         CTGCAGAA   TTCTGCAG         16          0   1.2e-005   2.5e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.5e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGCAAGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCAAGG   CCTTGCTG          9          0   1.8e-003   3.8e+000
#         CAGCAAGG   CCTTGCTG          9          0   1.8e-003   3.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.8e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGAAGACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAAGACA   TGTCTTCT          6          0   1.5e-002   3.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.68 seconds