# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/GM12878/inference_raw/DREME/RankLinear1.0_10_BCL3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/BCL3.fasta
#   positives: 250 from ../result/final_prediction/GM12878/fasta/RankLinear1.0_10/BCL3.fasta (Sat Feb 12 17:35:14 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.233 C 0.265 G 0.267 T 0.235


MOTIF AGGCACAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCACAC   GTGTGCCT          7          0   7.5e-003   1.3e+001
#         AGGCACAC   GTGTGCCT          7          0   7.5e-003   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCACGCAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCACGCAC   GTGCGTGC         16          5   1.2e-002   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.1e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGCTCACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCTCACA   TGTGAGCG          6          0   1.5e-002   2.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTGTGCGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGTGCGA   TCGCACAC          6          0   1.5e-002   2.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.6e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGCACAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGCACAT   ATGTGCGT          5          0   3.1e-002   5.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.54 seconds